Array 1 28528-32647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTN010000032.1 Aphanizomenon flos-aquae FACHB-1265 contig32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================== ================== 28528 37 100.0 37 ..................................... CCTGCTTGGAAAAATAAATTTCCTTTTGATATGATTT 28602 37 100.0 35 ..................................... AAAAAAGGAATTCTCGATAATCAGAAGCTAAAAGC 28674 37 100.0 35 ..................................... ACAATATGGTGGCATGTCTTCCATTTGTTGTGCAG 28746 37 100.0 35 ..................................... TGTCCACAAAACCCCACAAATTCTTCAATCCCAAA 28818 37 100.0 35 ..................................... TACAGCCAAATTATTTGTTAGAACTGCATAATGGA 28890 37 100.0 33 ..................................... TATTAAAGTCAACAGCAGATAACAAAGAAATTT 28960 37 100.0 36 ..................................... GGAGGCTAAGATGCACTGCCAAGCACTAAACAGGAA 29033 37 100.0 33 ..................................... ACTTGATGGACTCTGAGAAATTTAGAATAGGAT 29103 37 100.0 37 ..................................... TAATTAAGGATGCGATCGCCTCTATCCAAGAGGCTTT 29177 37 100.0 36 ..................................... ATTTCTTTAGAATTTATGGTACAGGATTAGCTAATA 29250 37 100.0 35 ..................................... CGAAAAACCAGCTAAGTACAGGGTCAAGCAGGGGA 29322 37 100.0 38 ..................................... AATTGACTGAACTTTGTAGCTTTCTGAATTTTCAGCAG 29397 37 100.0 40 ..................................... GGCCGAAAATTATAGCAGATATTAGAAGAATGAATAAAAA 29474 37 100.0 34 ..................................... GTCCCGTGAGCAATTCCCGCGTCTTTTGAGAGTA 29545 37 100.0 40 ..................................... CAAAGCTTCATTTAAATTCCTTAGGCTTTGCTCACCGCAA 29622 37 100.0 36 ..................................... TTGCTACAGGCTTCCTTATGTTGGGTGTGGTTCTTT 29695 37 100.0 33 ..................................... CTTATTTAAGTAATGAGTATATTGGCCATTTTT 29765 37 100.0 31 ..................................... ACAGGTAAGTCTGCACCACCTTCTGGTGGGA 29833 37 100.0 35 ..................................... GCAATATTATCCAGAGATCCAGCAAGAAATGAAAA 29905 37 100.0 40 ..................................... ATCAAAAATCAAATCCAAGCTTGCTTACGGGCGATTGCAA 29982 37 100.0 31 ..................................... GGCAAACCTAATAATTTATGCGGGTAAAAAC 30050 37 100.0 34 ..................................... ATAGTCCCTATTAGAGAGGATTGGGAGATGTATA 30121 37 100.0 34 ..................................... GGTAGCATAAATTTCTAGACCTCTATAAGAACCA 30192 37 100.0 37 ..................................... AGAGAACAAAACGATATTATGAAAGCAGCGAAGGAAT 30266 37 100.0 36 ..................................... CTACGGTGAATTTTTGGGGTAAAGACAGAGAGATTT 30339 37 100.0 36 ..................................... CGACATATGAAAAGTATTTTACTTTGCATATCTCAA 30412 37 100.0 36 ..................................... TCGAACAAGATAAATATGCTTCTTGGATTTCAAATC 30485 37 100.0 33 ..................................... TTACTTTTTTTTCTAATTCTGCTGCATTCGCCT 30555 37 100.0 38 ..................................... ACAAGAAAATGTAAAGGAGAAAAGCGATTCTGTTGTTG 30630 37 100.0 35 ..................................... TAAACTGCCTGAAAATACTTATCATTTTAGTAGGC 30702 37 100.0 35 ..................................... CTGCTATTTTTGTTGCTTCTAAGGCTGAAGATAAA 30774 37 100.0 35 ..................................... TTACCAGAGATTGGGAAGAAAACTTCTGATTTAAG 30846 37 100.0 35 ..................................... AGTGCGGAGATTAACGCTACCATGACCCGGCTGGG 30918 37 100.0 35 ..................................... GGGATACACCCTTATTAGGAGCGCTTACCACTGGG 30990 37 100.0 34 ..................................... GGCATTTAGACCTGAAGAAATGACAGAAGAACAT 31061 37 100.0 32 ..................................... CAAATCTGAAAATTTTCAGGGGTGAAAAAATA 31130 37 100.0 36 ..................................... TTTTCTCGAAAAGATGGTAAAAGAATGAAAATGGAA 31203 37 100.0 34 ..................................... AAGAGGGTGGCAAGATGGCATGGATACCTGCAAA 31274 37 100.0 34 ..................................... GAATAAAGTTCGAGGGCAAGGTTAGAGCCCAAAG 31345 37 100.0 40 ..................................... GAAAAATGAGATTTACTACTACCAGGTTTACCGTATACTG 31422 37 100.0 37 ..................................... CAATATACCGACAGACTAAATTTTTAGAGAGCCAATC 31496 37 100.0 34 ..................................... GTTAAATACGCGATCGCTAATTATGACTCTGAAA 31567 37 100.0 36 ..................................... AGATTGTGATTGAACAAATTACCGCAGATGTTTCTA 31640 37 100.0 39 ..................................... TTGAATTTCGCTACTGAAGCTATTAACAAACATTTTGGT 31716 37 100.0 37 ..................................... GTAATTATCTTTTTTCTGTTTATATTTTTGTACCATT 31790 37 100.0 36 ..................................... CGGCATCGAAAGCAATATCTTATTTGTGTGGCGCAA 31863 37 100.0 41 ..................................... TTCCGTCACCGTCAAAGTCGCCACCGCAGTCCTGAGAACCA 31941 37 100.0 38 ..................................... TTAATTCTTCTACGCAAGAGCGATCGCGCATTAACCAG 32016 37 100.0 34 ..................................... AATTCAAAGGATGATCTAATTTCTGGCAAAAGGC 32087 37 100.0 35 ..................................... GAAAGATGGACCAGCTTCGCTGCCGGGATCTTTAA 32159 37 100.0 38 ..................................... TTTTTGTTTCTTTTTACCATTTTAAATCTTTTCTTCCG 32234 37 100.0 35 ..................................... TTCTACTAATCCAGAAGAAAATAAAATGTTCCGCG 32306 37 100.0 34 ..................................... AAGTAAATCAAGTTTTTTAAGTTTAGGAGTAATT 32377 37 100.0 31 ..................................... AACTTGTTATGCTAACCGATATGCCACTTTT 32445 37 100.0 33 ..................................... ATAGTTTTTATGATATTATGGAAAAAATCCCAA 32515 37 100.0 59 ..................................... ATTGAGGATTTAAATATTGAGGATTGAAACGAATTACAATAAATCAAATCAAGCAGATT 32611 37 91.9 0 .............A.....A............C.... | ========== ====== ====== ====== ===================================== =========================================================== ================== 57 37 99.9 36 GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Left flank : GTGTGACTGAACGTGATTTAGAATTGTTTTGGGAAGCTTTAATTAAGGCTTGGGAGTTTGACCGCTCTTCTGCACGGGGTTTTATGGCTTGTCGTGGATTATATGTATTTAGTCATGCCAGTAAATATGGTAATGCTCCTGTACATAAGTTGTTTGATAAGCTGCAAATTAAGTCTAATGTTGATGTACCCCGTAGTTTTGCTGATTATCAGGTGGTGCTTGATGATGAATTTAAACTACCTGATGGTGTGATTTTGACAAGGTTGGATTAAAAATGCGCGGATGGTTAGGTGTTAAGTCGGAATGAGTATGATTAAGCTGGAAACTCTTGCAATGTATGGATTTCAGGACATGGGTAATTTAAAATGCCCGCGCACCTTATGCTGTAAGGGTTACAGCGTTTTTTGCTCTTGCTCTTGGGACTGGAATGGGGTATTATCTGAACACCCGCGCAAATCATTCTGGAAATCTCCTATTTCCAAGGGTTTCCCCGGCCCGCT # Right flank : CAAAATCATGTTTTATCTAAATACCCCCGTCCCTGACAATGATCATACCCCACCAACTCGACGGGGAAAGCATAAAATATTCATTGGAATGGCTCCCGGAGTCGGGAAAACATACAGAATGCTAGAAGAAGCACACCAACTTAAACAAGAAGGTATTGATATTGTAATTGGTGTTTTAGAAACCCATGGACGTAAAGGTACGGCCACAAAAGCCATAGGATTAGAGATAATTCCTAAAAAAACCATTGTTCACAAAAATATCAACCTTCAAGAAATGGACACCGAAGGAATTTTAAAACGCTCCCCTCAACTGGTTTTAATTGATGAATTAGCCCATACAAATACCCCCGGTTCACTTAGAGAAAAACGCTATCAAGATGTAGAATTAATTTTAGCAGCCAGTATAGATGTTTACTCTACAGTCAACATTCAACATTTAGAAAGTTTGAACGATTTAGTAGCAGGAATTACAGGTATCGTAGTCCGAGAACGAATTCCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTATTTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 94057-95300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTN010000014.1 Aphanizomenon flos-aquae FACHB-1265 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 94057 36 100.0 38 .................................... CAGCTATCAGCCGCTCGGCTACCTCTCCATTAATCTGA 94131 36 100.0 37 .................................... ATACCTTGCTCAAAGGCACGACCATCAGCATAGTTGT 94204 36 100.0 41 .................................... TTGGTAAGCACTAAATGACATACTCAACGGGTTACGATTAC 94281 36 100.0 41 .................................... TTCCCAATCTATGCCTAATTCCATTAAGCATTTGAATTTAA 94358 36 100.0 40 .................................... GATTTAATACTAGATGAATTAATCAACCAATCAATGATAC 94434 36 100.0 37 .................................... GTTACAGGAAGTAATGGTACTAACTTAGGGGGGTTAG 94507 36 100.0 40 .................................... AAATGGGTTTTGTTGGCGGTAAGGTTTTAGAGCCTAGTTG 94583 36 100.0 42 .................................... CAACAGATAACTATCAGTGCCTCAACAGATAACTTTTATTTT 94661 36 100.0 42 .................................... TTTCGTTGACTTATCGGACAATAATTATCCGTCGCTATAACT 94739 36 100.0 34 .................................... TATACTCCAGGTATTCATGATCTTTAAGCATCCA 94809 36 100.0 40 .................................... TTGAGTGAAAAAAGATGTTAATTTTACCGTTAACTGCTTC 94885 36 100.0 36 .................................... ATAACTAATGTTCTATCAAACGTATATTCAATTAAA 94957 36 100.0 42 .................................... TCTAACAGGAACTAAATCAAGGACGTATTTCCTACCACCCAA 95035 36 100.0 41 .................................... GTATATCCGCCGAAACTATAACGGGGTTAAGTTCTAATACC 95112 36 100.0 46 .................................... GATCTAATGTATTTCATGGTTGTCCTCTAATAGAATAAGTAATTAG 95194 36 100.0 35 .................................... CTAAGAATAGACTGAATATTGTTTTCATGTTTACA 95265 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ============================================== ================== 17 36 99.8 40 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TAAAGAGATTGGTAGGGTTGTAACTTTGGAGGAGGGTTGTTTAATGGGTGGTTTTGGTTCTGCTGTGGCGGAAGCTTTACTTGATGCTGATATTGTTGTACCTGTGAAGCGGATTGGTGTTCCTGATATTTTGGTAGATCATGCTACACCGGATCAATCTTTTGCTGCATTAGGTTTAAGTAGTCCTCAAATTGCCGAAACTGTTTTACAGGCTTTCTTTAGAAAACAGGTTGCTGCTATGGTGTAGTTTTTGTCTGAATGAGGATTTGCAGCGATACAGGATTTAATTATTTTGTATATGTTTGCTGGTCTTGTTTATTTTCCGAAGTTCAGGTAAAATGGCTGTAATATTGATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTGGGAGTTTTTTTCTTGCTGTCGGTTGGTGGTTTTACTACTTTTTTCCTGACCCTCGGAAACTGTCTCTGGACACCTTGCTGGGTAAGGGTTTAAAATTGAGGG # Right flank : CAAAAGCACAGATAGTATATTTCCCTGGTCTAATCAAGTACATACCAACTTGTTTCCTGTTCCCTAAAACTAAAAAACCTTATACCTCAAGAACATGAACCAAAAAACCCTTAAAAATCAACAAACCCACAATACCTAGCCACCAAACCAGCTAAAACTTGCAAATCTATCGGTTTAGAAATATACTCATTAACACCAGCAGCCAAACAAATTTCTCGATCTTCCTTCATCGCCCTTGCAGTTTGAGCAATAATCCCTATATGCTGATATTTAGGGTTTTCTCGTAATTGCTGCACCAAAATTAAACCATTAATATCAGGTAAACTCACATCCATTAAAATCACTCTTGGTTCTATTTCCCGCAGACTATTCCACATTTCCACCCCATTTTTTACCCAAATTACCTGATACCCCAATCTTCTTAAATAAATCCCCATTAATTCCCCATTTGCTAAGTCATCTTCCACTAGTAAAACTACTGGTGATAAAGTCATATTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1685-8005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTN010000008.1 Aphanizomenon flos-aquae FACHB-1265 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1685 37 94.6 41 ...................................TG TGGCTATTTGTGGGGTGAAAAACCCAATATTTCTGCACTAA 1763 37 94.6 37 ...................................TG TTCCTTATGCCTTCTGATTTTTCTTAACTAATGAAGA 1837 37 94.6 34 ...................................TA AAAATTCTCCGGATCTAGGTTCTCCAGATTCATA 1908 37 94.6 35 ...................................TT GGGATAACAGGCGCGGGTTATGCACCAGCCTGGGA 1980 37 94.6 39 ...................................TT TGATGTGATGTATTCCACCCCGCGGCATACATATCAAGA 2056 37 100.0 36 ..................................... TTCTGATACTTGCGGATTTGGTGAGGCGATCGCAAA 2129 37 100.0 38 ..................................... ATTAAACAAATAAAGTAAATCTAGATTAGATTTCAAGA 2204 37 100.0 36 ..................................... CCCTGAGTCGTAACCAGCGCCGAATTGGTTCGCCAA 2277 37 100.0 43 ..................................... TACTTTTACATTTCTATATTCGACTACGGTGTTGACGGTGGTA 2357 37 100.0 40 ..................................... AGCCATTTGTTGTTCTTCTATGGCATGAAGTTGATCAAGA 2434 37 100.0 40 ..................................... GGGTATGGCGGTGAACGATGCCAGGGAGAGCGATCGCACA 2511 37 100.0 35 ..................................... ATTCATGCTTATCAATCAGTGGGTAAAGTCGTAGA 2583 37 100.0 35 ..................................... AAAATGGGCGAAACTCGAGTGATAGGGGAAATGGA 2655 37 100.0 40 ..................................... CAATTAGGGTGGATCTTTTTTACCCAGTCCAAGGCGTTAA 2732 37 100.0 33 ..................................... CCTATCAATGAAATAATCGTCAATGCAGTCTTA 2802 37 100.0 37 ..................................... ATCCCCAGTCGGAAAAGCAAATTCTTTCCCACTGATA 2876 37 100.0 43 ..................................... TTCAATCAAGATGACCTAGAAAGTCCGCGGACTGAAAGGGGAA 2956 37 100.0 36 ..................................... AAAAAATCTCTCCTACCAGAGCCGCGATGACAGGTA 3029 37 100.0 40 ..................................... AACCCGCTTAATGGGCTGGTATGTGCAGATAAGATATATA 3106 37 100.0 35 ..................................... CTCCGAAGGATGGGTAACTTCTGCTACGCAAAGCA 3178 37 100.0 35 ..................................... CAAAAATATCTCGATCAACATGATCTTTTAATTCA 3250 37 100.0 38 ..................................... TTATGCTTCTGAATCTGAGGTCGCTCCTGACATAGAAA 3325 37 100.0 35 ..................................... GGCAAATTTAGTGCTGACAATTTCCAAGTGATCTA 3397 37 100.0 37 ..................................... CAGCATTGCCGATGCTAAATTCGTTTGGTTTAACGGA 3471 37 100.0 44 ..................................... CAATTATTTCGCCATCCTGAATCTTGATGTAATCACGGCGCAAA 3552 37 100.0 36 ..................................... TTCCCCATTTTACTCAAGAGAGATAGAGCATTTATA 3625 37 100.0 36 ..................................... TTCGGGTCTGTCCCCTACCATCAAAACTTCCTCTAA 3698 37 100.0 33 ..................................... GAATCAATGAAAATGGATATCAATGGACTAGAA 3768 37 100.0 37 ..................................... TTCTTCTTTGATGTGATTGAGTCAGGGGGTAAACTCA 3842 37 100.0 35 ..................................... AAATAAATAATTTCATCACCAACTAAGGCACAATA 3914 37 100.0 37 ..................................... TCCTTCGCAATCCCTACCTCTAGCAGTACAACACTAA 3988 37 100.0 37 ..................................... TGATAATTAATGATTCATCACACTGAAATCTTAAAGA 4062 37 100.0 36 ..................................... ATGATATAAATGTGAGGCAAGGGAGGAAAGCCCAAA 4135 37 100.0 43 ..................................... GAGTTGGGAGAAGGAACTAAAACCTCAGCGAGAGTAGTAGGAA 4215 37 100.0 36 ..................................... ATAGAGAGCTCTTGACTCTGGAGAGCCAAAGAACGA 4288 37 100.0 36 ..................................... AATGGTGAGTTCTGGACTGGTAAAAATTGGGGGAAA 4361 37 100.0 37 ..................................... GAAAATTGACGTAAAACTGGAGAGTAAAAGTAAAAAA 4435 37 100.0 38 ..................................... AGTAAACGGTTTTAAGTGGCTGCAACTAGACCGCGCAA 4510 37 100.0 38 ..................................... AAAAAGTAAAAAGTAAGTAAGGAAAGGCAAGGAAGATA 4585 37 100.0 39 ..................................... AGTGCTAAGGGGAAGGCTTTAAATTCCCAACTTTCCTCA 4661 37 100.0 36 ..................................... TAAAAGCTTTTGGCAAGAGAGGTTAAGAGCTTACGA 4734 37 100.0 35 ..................................... TAGCCGGGAGTTATAGAGGGATGGAAATTTACGCA 4806 37 100.0 36 ..................................... TACTAGACTATAAATATAGGGTAAAGCAAAGGAAAA 4879 37 100.0 36 ..................................... AGACGCTTTTTCCAGAACTTCTAATCGTGTTGTAAA 4952 37 100.0 38 ..................................... TTCTCAAGATTGTATCTTGTCGCGCTTGATATATTTAA 5027 37 100.0 41 ..................................... TTCAGTATTTCTGTTTCGATGTGGGCTAATTCCTTCTCAGA 5105 37 100.0 38 ..................................... GAATACTTCAATATCCCCTAACTCAGTTTCTATTGTTA 5180 37 100.0 35 ..................................... ACTGCCAAGGAACTTTTAATTAAAAAATTAGAAGA 5252 37 100.0 37 ..................................... ACTAAACTCATTATCGTATTGTGGAAAGCCTAAACTA 5326 37 100.0 36 ..................................... AAATGGGAATTAACTAAATCCAAAAAAATAGAAAGA 5399 37 100.0 37 ..................................... CCCTTGAAATAACCCAAAGCCTTAAATAACTTTTCTA 5473 37 100.0 40 ..................................... CCAAGAGCCGCCCCAGCAACACATTCCAGTAAAATCTCAA 5550 37 100.0 34 ..................................... AAGAATAAAGTGTCCTTATATTTTTACAAAAAAA 5621 37 100.0 34 ..................................... TACAATCTATTAATGATTTAAAATCCAATTTAGT 5692 37 100.0 39 ..................................... CAGGTATTGTAGAATCTATGCAAGCAGCTAAATGATTGA 5768 37 100.0 38 ..................................... TTTGTGGCTGCCAAGGCCGAAGAAAAAGACGGTGATAA 5843 37 100.0 36 ..................................... AGAGATAGTAGCCCGTAATTCATTGACGGGACAATT 5916 37 100.0 37 ..................................... AAAGAGATTGTTACTGATGTTCCCTCACCATCATAAG 5990 37 100.0 35 ..................................... TATGCCAACATATTCTGATATTTTCGATAACAACA 6062 37 100.0 38 ..................................... ATAGATAAAATTCTGTTAGTTGAGGAATAAGATGCAGA 6137 37 100.0 36 ..................................... TTCACATGGCAGAAGTTCCCGATCTAACAAAAGCCG 6210 37 100.0 37 ..................................... CAGTATTTTTTATAGACCCCAAGGATGATCCCAAAGA 6284 37 100.0 41 ..................................... ACTTCCCTGACATCTACATTTACACTTTAACAAGTTCACAG 6362 37 100.0 35 ..................................... CAATCAGCAAGCTCAAACTGATCTAAAACTAAAAA 6434 37 100.0 33 ..................................... TATTTAGTTGCCCAAGAAGTTTCAATAGCGGGG 6504 37 100.0 33 ..................................... TAATAATTTGTGAGGTAATCCCCACAAGATTTC 6574 37 100.0 38 ..................................... TTAGAAAATTACGACAATAACCCAGACTTACTGGAGAA 6649 37 100.0 33 ..................................... CCTGCTTTACCTCTAATTTTTCTAACTGCGCTT 6719 37 100.0 35 ..................................... TAAAATCCTTAAACTTAAGTTGCGATCGCAAGATA 6791 37 100.0 38 ..................................... TTAATTACTTAAAGTAGCTTAAAAACCTTTCAACACTT 6866 37 100.0 36 ..................................... ATCGGGAAAGCTTACCGACTCAAACCCCATATTAAA 6939 37 100.0 35 ..................................... GTACAAGTCCCGTTACCATTAGGCTTATCATAATT 7011 37 100.0 40 ..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAAA 7088 37 100.0 34 ..................................... ACTCCTGTCCAGCAGCAGAGTTTTTTCAGCTCTG 7159 37 100.0 34 ..................................... ACTATTAAGTTAGTCAGCAAAAATGACAAGTTTA 7230 37 100.0 39 ..................................... TGAATATCAACAGTATTAAAGATGCGATCGCTCCAAATA 7306 37 97.3 37 ........................A............ TAGCCTGAATCACTTTAAATACCTGTTGAATAAAGTC 7380 37 100.0 40 ..................................... CGTGGATATGGTGATTTGAGAAAAGTTGCCACTTGGAAAA 7457 37 100.0 37 ..................................... TACCTATTGGAGATTGTAGAAATTTTTGGGAGTGGGT 7531 37 100.0 36 ..................................... AATTTGATTACGTTTTAGCACGTTGTAAATATTTGC 7604 37 100.0 41 ..................................... TCACAAAAAGTATTCTGAACATCCGCCACAAATAAAGGCAC 7682 37 100.0 37 ..................................... GAAGCGGCTATGAATTTGTTAATGGGTGAAGGTTATG 7756 37 100.0 34 ..................................... AATTCAGTAATTCATCAAGATTTTTACTCATGTT 7827 37 100.0 34 ..................................... AGCGCAAATAATCTGACCTGACAACGGATAACTT 7898 37 100.0 34 ..................................... ATTTTTATGAAACTACACCTGGCCACCAAAATGA 7969 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 86 37 99.7 37 ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTGTTTCTTACGATATTTCTGAGGACAAACGCCGGACGAAAATCCATAGTATTCTCAAGTCCTATGGTCAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAACTAAGATCGCGTCTTAATAAGCTGATTAAACCGGAAACTGACAGTGTTCGCTTTTATTTCCTTTGTGCTTGCTGTTTTGGTAAGATAGAAAGGGTCGGCGGTGAACAACCCCGTGATCAGACGATTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAATATCTAGGTCTGGAAAAAATGTCTGAAATCATCTCTGTACAAGACTTTGAGCAATTTATGGCGGTTCACCCACCCGCGCCCTTTGCCCAGTATGGGTTTCACGGATTTTACCCCTTGACACTTTTTCGGAAATGGTTTATTATGAGTTCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCGAGTCCCCGCCA # Right flank : CAAAATTAATTTTTACCCAGATAGATTAAACCCTGTGCTATTAAGTCTCCTAAATTAGTTAGCTTTTATTGTAGTTTTAGTTGCTATATATGTCGCTAAATCTGCTCAAAAATCTGAATCGCAAAAATAATTGCCTAATTGCCAAATCCAGATGAAATATTAATAAATTGCCAAGAACCTTATGTAGTCTTAAAATTCCTTTAGGGACAGAAAAGAAGTCTTGGGAGATTTTACCTTTTATTACTTATCTTCCTGCATACTCCTGACAATTTTTGTGACCATTTTTCTAGGAATAAACCGCACACATTTTGACATAATCTTATTCATAAACCCAGGAATAACAATTATTTTTCCCTGAATTAGGGCATTATAACCAATTTGGGCAACAGTTTCGGCATCCATCATATTTTTACCTTTCAGCATTTTAGAATCAGCCATTCCTGTTCTTTCATGAAATGCTGATGCTGTAGAACCTGGACAAAGAACTGTGACGGTGACAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //