Array 1 219935-221427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTQ010000002.1 Salmonella enterica strain S25 NODE_2_length_399252_cov_114.212631, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219935 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 219996 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 220057 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 220118 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 220179 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 220240 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 220301 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 220362 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 220423 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 220484 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 220545 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 220606 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 220667 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 220728 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 220789 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 220850 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 220912 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 220973 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 221034 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 221095 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221156 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221217 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221278 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221339 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221400 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237559-239462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTQ010000002.1 Salmonella enterica strain S25 NODE_2_length_399252_cov_114.212631, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 237559 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 237620 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 237681 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 237742 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 237803 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 237864 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 237925 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 237987 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 238048 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 238109 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 238170 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 238231 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 238292 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238353 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 238414 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238475 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 238536 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 238597 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 238658 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 238719 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 238781 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 238884 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 238945 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 239006 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 239067 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 239128 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 239189 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 239250 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 239311 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 239372 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 239433 29 96.6 0 A............................ | A [239459] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //