Array 1 47040-44972 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFDH01000023.1 Acinetobacter baumannii strain TG28339 Acinetobacter-spp-TG28339_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 47039 29 96.6 31 ............................T TATGATGCTGTAGCTTCTCAACTTATCAGTG 46979 29 100.0 31 ............................. ACCCTCGCCCGCAACAGTAGTTGCATTAGCT 46919 29 100.0 31 ............................. ACTACAACTCCTCCTGCAGATACGCCACCTT 46859 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 46799 29 96.6 31 ............................T TACTAATCCACATTCTTCAGATACATATCTT 46739 29 96.6 31 ............................T CTATAAGTCATGAAATCAATTTCATGGCTTT 46679 29 100.0 31 ............................. AACTGCTTTTTTTGGGCTTCCTTCATACATG 46619 29 96.6 31 ............................T TGTATTTATACGGTTAATAAATCAGTACAAT 46559 29 100.0 31 ............................. TCTTAAGTTCGAATAAACGTACAAATGGGAT 46499 29 100.0 31 ............................. TAACGAGAAGCGTTGCGTAGACTTACAACTC 46439 29 100.0 31 ............................. AGAGCAACTAATTCCCCGGCTGTTACTGGTA 46379 29 100.0 31 ............................. TAAGAAGTGTGCTCATCAATCTGTGCTGAAG 46319 29 100.0 30 ............................. AAAAAGGCAGCAATTAAGCTGCCAAATCAG 46260 29 100.0 31 ............................. TATGATGAAGACTGAAAACGAGAAGGTTCGC 46200 29 100.0 31 ............................. AGATCTGACCAGCTAAAACATTCTGGTTATC 46140 29 96.6 31 ............................C GAGGATGATGTTGATTATGTCATTAAGAAGT 46080 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 46020 29 96.6 31 ............................T TGAATGTCATTATCTTCAGTCGCAATGACAT 45960 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 45900 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 45840 29 86.2 31 ...AC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 45780 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 45720 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 45660 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 45600 29 82.8 30 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTT 45541 29 82.8 31 CG..G........C..............T TTATAACCACCAGTTAAAGTATTGACTAAAA C [45536] 45480 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 45420 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 45360 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 45300 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 45240 29 82.8 31 ....A......TGC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 45180 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 45120 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 45060 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 45001 29 82.8 0 .G..G...................AT..T | C [44996] ========== ====== ====== ====== ============================= =============================== ================== 35 29 93.2 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACAT # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [46-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52130-53538 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFDH01000023.1 Acinetobacter baumannii strain TG28339 Acinetobacter-spp-TG28339_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52130 28 100.0 32 ............................ TAATGAGCATGGCCTAGATTTGAGAGATGGTA 52190 28 100.0 32 ............................ TAAAAACCTGTTCAGCTACTACAAGTCTGCTA 52250 28 100.0 32 ............................ ATGTATTTCAACATCTTCAACAGAAAGCTGAA 52310 28 100.0 32 ............................ GTGTACCCTGTTGTGAGAACGCATAATATTTA 52370 28 100.0 32 ............................ TGATCAAATCGTGGGGCTGTCCAGTACTGCTT 52430 28 100.0 32 ............................ TTAGTCATATTATAAGTAACTGTAGAATTATT 52490 28 100.0 32 ............................ TGGCTGACCTGTAATGAGTTTAATTGGCATTA 52550 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 52610 28 100.0 32 ............................ ACGCTTAAAAAAGCGTTCCCCAAAGCCAGTGG 52670 28 100.0 33 ............................ CTATGGGGGAGAAAATTATATTAGCTAAAATAT 52731 28 100.0 32 ............................ TAAACAAAACAAAGTAACGGCTGTAGGTTTTG 52791 28 100.0 32 ............................ AGATCGCAAACGCTGTTAAAGCCGGGGTTTTT 52851 28 100.0 32 ............................ AAAAGTGACCTCAAACGACCGAACCATATGAA 52911 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 52971 28 100.0 32 ............................ TTGTTTGTAGTGTAACGGTTAGCTTATATGGT 53031 28 100.0 32 ............................ AGTATCTATATATCCTGATTTACCAAGTATAT 53091 28 100.0 32 ............................ GCAGCCGCATAGCCCGCTTGCAGTTGGTTTAA 53151 28 96.4 32 ............C............... TATATGGCCTATGGAACTATCCATAGGCCTTT 53211 28 100.0 32 ............................ AGCCTAATTGCGCACGTCCTTGTTCAACAAGT 53271 28 100.0 32 ............................ TTGAATTGGCTAAACCTGCATTGATTGCATGT 53331 28 100.0 32 ............................ AAATTGGGTACACCAATCATCTGGCAGGAAAG 53391 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 53451 28 92.9 33 ............CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 53512 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //