Array 1 29343-24906 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWF01000059.1 Emticicia agri strain 17J42-9 scf7180000000846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 29342 37 100.0 36 ..................................... AAAAGAATGGCACATCTTATTACTTCCGTAAACAAT 29269 37 100.0 41 ..................................... TCTAGGAATCGCCCAGTTTTTGACATTCACTTACTTTAATC 29191 37 100.0 36 ..................................... TGGTTCATTTGCTAATATAGCAGGTAAAGCTGAAGT 29118 37 100.0 33 ..................................... AATATGACCGCCTCCTTACGGATAGGATTACCT 29048 37 100.0 36 ..................................... TTAATTACACCTGCACAATTAGCTCCATTTATGAAG 28975 37 100.0 34 ..................................... GGAATAATTTAAGATATGACTCAGTATCAGGAGA 28904 37 100.0 35 ..................................... TATGACAGTAGTTTAAAATTCCTTAACTTCTTTAT 28832 37 100.0 34 ..................................... CGATGGAAAGAATCTTATTCCTTTGGTTGAAATT 28761 37 100.0 36 ..................................... TGAGATGGTTAAGAAAGCCTCCCCTGAAGATGTAGA 28688 37 100.0 34 ..................................... AAAAACCCGTACGTTGACTTTACAACTGCAAGCT 28617 37 100.0 34 ..................................... TCACAAGAAACCTCTTAAATACAATAATATGAAT 28546 37 100.0 35 ..................................... TAGCTAAATGCGAAACTCCGGAATTGGAACTTTTT 28474 37 100.0 35 ..................................... GTACCCATGGTTTAACGGAATCATGCGTACAAGTC 28402 37 100.0 35 ..................................... ACTGTAGATGAAGATGATTTTCACCACATTAAAGT 28330 37 100.0 34 ..................................... GTGGTTAGGGTTTTCCATGACTCTTGAGAAATTA 28259 37 100.0 32 ..................................... TGAAGTCAGAAATGACAAAAATGGCAAAAAGT 28190 37 100.0 34 ..................................... TTCAACGTGCGCAAATTGCGGCAACAAAAGAAAA 28119 37 100.0 36 ..................................... GTTCTAATCCTGATATTAGCAAGGATAAAAACGAAT 28046 37 100.0 36 ..................................... ATTTATTGTTAACTCTGTCGGTATTAATCATTACGT 27973 37 100.0 34 ..................................... AAATTATTGACGCCCTGGATTCAACTCCGTATGT 27902 37 100.0 35 ..................................... GCGATGACGAATGCCTTGGCAAAAGTGTTAAAGAC 27830 37 100.0 43 ..................................... ACTCTGATAAGCCTGATTGTGTGAGTGTGCAGCAAAAGCATCT 27750 37 100.0 33 ..................................... TTCGGATGTGTGTACTTTGTGTACACGCAAAAT 27680 37 100.0 35 ..................................... GGACTGAATTAGAGGACGCAGTTCATAAGACAATA 27608 37 100.0 35 ..................................... GTATACGAGTCACTTAAGAAGAAGGCGGAAAAAAT 27536 37 100.0 31 ..................................... AGACACAAAACTCTTTGAGTCTTTGCCAGAA 27468 37 100.0 34 ..................................... AATATAATCAAATGACAGCAATCACAACGCCTGT 27397 37 100.0 36 ..................................... AATCTATCAGGTTACAGGTAAAACATTAAAGTATAA 27324 37 97.3 35 ....T................................ TGGGTACAAAAAGGAAGCGAACGGTGGGGTGGAAA 27252 37 97.3 35 T.................................... TCAGTACAAGCTGCATTCCTATTTGGGTTGCAACC 27180 37 100.0 35 ..................................... ATAGTAGCTTGCTCGTATGTGATGAACGGTAAAAA 27108 37 100.0 33 ..................................... AATATGACCTGCCTTTCGGCAGCTTAATAGCTT 27038 37 97.3 36 ....T................................ CCAGGGTAGAATTTGGGTATCTTGATAAGGCTCAGA 26965 37 100.0 36 ..................................... AAAAGTTGTTCGTTCAATTGTTCAAAATGTCTGCAT 26892 37 100.0 34 ..................................... AAATATGAATCGCAATACACTCAAAATGCTATGT 26821 37 97.3 32 ..A.................................. ACTGAGTTGGTGTATCCAATAAAGTCTATCAA 26752 37 100.0 35 ..................................... TGAATATCTTGGGGAGGAAGATTTTGAAACCCTCT 26680 37 100.0 35 ..................................... GGTTAAGCCTAATGTGATGACAATTAAGCCTCAAT 26608 37 100.0 36 ..................................... TTTTTCACATCATGAAAAATTTCAGCAAAATTTCAA 26535 37 100.0 43 ..................................... ATTTATACCGCAAGCGGTGACCACATCGGCGGCCACAAAGTAT 26455 37 100.0 35 ..................................... GCAGTATGATACTTTTATAGAAGCAGCTCAGAATG 26383 37 100.0 35 ..................................... TTTGTTGCTAAATTAATAAAATGAATAAAAAACTA 26311 37 100.0 34 ..................................... TTTAACATCCGCAGCATTAGGCCTTGCCTGTGCA 26240 37 100.0 36 ..................................... GCACGCAATCCACTCGCCGGAGTGAAATGTTTCAGT 26167 37 100.0 36 ..................................... GAGGAGTGCTATGTTCCAAAGCACATTAAGATTTGT 26094 37 100.0 37 ..................................... ATTCCGGAAAAGCACCTTTGGAGTATCATTAAAGTTT 26020 37 100.0 35 ..................................... GGAGAGTTTTAAAGGGGAAAGAATCGGAGATGTAA 25948 37 97.3 31 ......................C.............. AATGTATTGTTATCATCGGATTACCAGTTTT 25880 37 97.3 36 ...........................A......... CAGTTGAGACAGCAGACCAAGGAACCAAAACATTTA 25807 37 100.0 35 ..................................... AACATGGCTCACTTACCATCTCTTCTTTTAATGTT 25735 37 100.0 37 ..................................... TATCATGTTCTGAAAGTACATCAAATGTATGCATAGT 25661 37 97.3 34 ...........................A......... AAAAATATGGGCAGCCTGCACTTTCGTCTGTATT 25590 37 100.0 34 ..................................... TAATTTTTGGAGCCCTTCTTGGCTTCATTTTAAC 25519 37 100.0 35 ..................................... CTATGTACCTACAAGTGATCGCTTTAATCGCCATT 25447 37 100.0 35 ..................................... TGCCAGCCCGGGCCAGCGACAAGCAGACATACTGT 25375 37 100.0 35 ..................................... AAAAAACTGTTTTTTGTAATGTTTTTTGTTTCTTT 25303 37 100.0 37 ..................................... TTCAAAGTAGATGAAAATTCGGTGTGGACTATAGTTA 25229 37 100.0 34 ..................................... AAAGTATGACCTTTAAGATTGACAATGCTAATGT 25158 37 100.0 36 ..................................... CGTATAAAGCAAAGGGGGATTGGCGCGAGGATGACA 25085 37 100.0 36 ..................................... AATACCCAAAAAACCAAAAGAAGGAGCCGAACTGAG 25012 37 100.0 33 ..................................... AGTGTTTGCTGTAATAATATTATTACACGGAAT 24942 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 62 37 99.7 35 GTCTCAATTCTATCTACTCTGAATGATGTATTTCTAC # Left flank : AAGGATAATTCCTTCCTGATTAACCTTCGCTTCCAATGCTTTTAAACGTTTCTTAAAGGTAGCTAAATCATGTCTTAACCAGATTGAACGTACTCCACCAGGAGAGACAACTATACCTTGTTTCTTTAGCTCATTTGATACTCTTAGCTGTCCATAAGCTGGTAAGTCCAATGCCATCTTGACAACGGCTTCTTCTACTAACGTATCTACCCGATTTTTCTCTATGGGTTTTCTGCGACTAATTTCTTGAAGTGCTAATTCACCACCTTGTTCATAGAGTTCCTTGAAGCGATAGAAACTATCTCGACTATAACCCATTACCTTGCAAGCCTTTGAGACATTGCCTAAAACATTGGCAAGTTCTAATACTCCTAACTTGTTCTTGATGATTTTTGCCTGTGTTGTCATTTGATTTAATCTTTAATTTTAAGTTACTAAATAAATCGTAACTGTCAGATTAAATCATGACTATTTCACATTAGGGCATTTCTGGGTTCCCT # Right flank : AGAAATCAAGAAAATCAGCATTGAGCATCCAGGGTCTATTCAGGTGGCATTGCGCATTTGTCAGGATATTGCGGATTTCTGTTTCGTCATCACCCTCGTCAGCTAACTGAAAAGCATAAGCAGCCGAGGTTCTTCGGAGGTAATAGCAACATTGGAGGTAATAATTCAGCTCTCGTTGTATGGCTTTCAGGTTTTCTTCGGGGTCTTCCAATAGCCTGAATCCTCCTTTCTTTTTTGGAATTTTAAATTCATGGTAGGAAGGGTTACTTGCAAAAAACTCAAGGGCAAAGACCTGTGTTTTTAGTAGATAAGCCAAATCATCAACTGTTCTTACCTGACAAAAGATATTCTGAGCCGTTTGCTGATAGGAATATTGAGCCATTGTCTGAAATTTTTAAAAATCCGATACGTCAAAGAACTCAATTGTGAGAATTTAAGGTCTTTGTCAGTTTTTATGAACCGCTGACACGGGTTTTACTCTTGTATCCTTGATAGGGGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATTCTATCTACTCTGAATGATGTATTTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 604-851 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWF01000078.1 Emticicia agri strain 17J42-9 scf7180000000865, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================= ================== 604 34 100.0 41 .................................. GACATTCCTACGAAAAGGAACTCTTTAGCGAATTCTTTAAT 679 34 100.0 36 .................................. GACAGTATAATGAACACCAGCACCAGCTCCCACACT 749 34 100.0 35 .................................. GACTACTTCCCAAACCTTGCCATTCTTATGAAGAT 818 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================= ================== 4 34 100.0 38 GTAGAAATACATCATTCAGAGTAGATAGAATTGA # Left flank : TGTGGTAATAGGGAGCAACACGAATATCAATTATATTTGGCTATAGAAGATATTGACCATACTAAAACTAAGGCCAAAAGTCCTCAAACTAATGGTATATGCGAGCGTTTCCATCGTACTATTCAGGATGAATTTTATGCGGTTGCCTTTCGTAAAAAACTGTATCATTCTTTATCAGAACTACAAAAAGACTTAGATTCGTGGCTGAATCATTATAATACTCAGAGAACTCATACTGGTAAATATTGCTATGGTAAAACACCAATGCAAACTTTTATGGATAGTTTACAGTTAGCTAAAGACAAGCTCTTGGAAGAGGTCTTTAAAATAAACATCTTAGAAGACAATAAAAAAATGACTGAAGTGCCAGTTCAGTCATCTAATCCAGAGTTTAACTGGAATGCTATTAATATGCTATCTGACAGTTAATTTTAGCACCCTTCTGTCAGATTAAGTCTTGTCTATTACACCTAATGCTATGACTATCGTAATGGTCTGAA # Right flank : AAGTAACAATTATTTGCTTAACAAAGAAAGTGCCTCGGTTAACATATATTATGAAAAACAAGACTAAGGTTTAAAAGAAGAGAATAGTTTTTTGTGGCAAGCCTTCACCAGCAAAGCATCATAAAGGGCATTATGCTTGCTAAGAGGGAAATTAATACTCGAAGTAGAAAAATCACTCACAAACGCCTCACGACTAATATCAGGCTTAACACCTCTTATCTTAAATGCTGTCGACAAATCAAATGGAATAAAAAAAATATTGCCGGGTATGCCAAAAGCATCACCAAAAAGATTACAAAACAAAACCCAGTCATAGGCCAACACATCAGCCCATATTTCGGTATCCTCAAATCTGGCTAACCATGTGGTTAAAGCAGTTCTTACTTTAGAGCTATCTCCTTTTATAAATGTTCGGTTGTCTTCATAAATATCTGCCACCAAAAACAAATGCCTCATTACATTTGCCTCTATCCAGTCATTAAGCTGAGTAGTAGCATAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATACATCATTCAGAGTAGATAGAATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1044-15466 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWF01000024.1 Emticicia agri strain 17J42-9 scf7180000000811, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1044 29 100.0 36 ............................. TTAATGAAGTAGCACTTTCATTCAATAAGAATAAAC 1109 29 100.0 36 ............................. AACTCATAATGAATCAGAAAGGGAGGCTCCGGTATT 1174 29 100.0 37 ............................. ATACTGAATATTTGCCAATTTCGTTTACTGTTCCTTC 1240 29 100.0 36 ............................. ATGATTTTTCTTTGGGTTTTGTTGCTGGTTTCACCT 1305 29 100.0 36 ............................. ACGAATAATTTTTACAGTTTAGATGCAGCACCAAAA 1370 29 100.0 37 ............................. TGAGTTCGAATCACGCACAACAAACCATTAAATTTTT 1436 29 100.0 36 ............................. TTTTCTGGTGTTTCTTCGCTTTCCTCTGTATCCGTG 1501 29 100.0 36 ............................. TTTGGACATCTTTTGTCCAAGTTTTATAGGTGAAAA 1566 29 100.0 36 ............................. GTACCTTTTACAGGTACATAACCTGTTGAGCCTGCA 1631 29 100.0 36 ............................. TGTCGGCTGAATCTCTCGAATTGCTCTAAGCATTTC 1696 29 100.0 36 ............................. TTTTGCATTGTTGTTTTTAGCATAGAACATTTCACA 1761 29 100.0 36 ............................. AAAAGAGCCGTGATAAGATAGATGGCGTAAGTGCAT 1826 29 100.0 36 ............................. TATAATATCTTCTAAGTTCTTTTCTAAGAATATCAT 1891 29 100.0 36 ............................. TTTTATTGTCTATTCTTATCGGACACCAGTCGGGGA 1956 29 100.0 36 ............................. AGTCTTGAATATAGTTTAGTGCAAGATGTGCCGGAA 2021 29 100.0 37 ............................. AATTTAGGCGTAATTATTTTGTAAAAAAGTGAAAATA 2087 29 100.0 37 ............................. CTACACAACACTATGAGAACAAAGATAAAGGCAGAGT 2153 29 100.0 36 ............................. AGAATGGCGAAACAGTAGGCAATATTAGATTCGTTG 2218 29 100.0 36 ............................. ATTTTTTGTGTAGTAATCATTGCTTTTTGATAGTAA 2283 29 100.0 36 ............................. AAAGTAGTCATTATGAAGTTATGGTAAAAATTAAAC 2348 29 100.0 36 ............................. TAAAGTGGTTATTTGTTGTAAAGAATCAGAATTATC 2413 29 100.0 37 ............................. CACTCACGAAGAATTAATTCACTTAGCGCAATTCGGT 2479 29 100.0 35 ............................. AGTAATCAATATGATGCAATTCTGTCATTTTTTTC 2543 29 100.0 36 ............................. AAACCAGAAGCACGATTGAAATCACTGACCATAATG 2608 29 100.0 36 ............................. CTGTATCCGTGTATGTGTGTATTTCGCCTACTTTAT 2673 29 100.0 36 ............................. CAGGGTATTTATAATGTCCTGGATGGTAAGACAAAG 2738 29 100.0 36 ............................. CTAAAGCCGCAAGACTTGTATTGGTCAATAGCTTAT 2803 29 100.0 36 ............................. TAAAATGGGTAGTATCAAAGCTCCCGATTTCGACAA 2868 29 100.0 37 ............................. TGAGGAACGCTTGCAAAAGTATGTAATTGAAAGGGCA 2934 29 100.0 36 ............................. TTGATTGCGCCTTTTTCAATTGCTAAGGCCGTACCA 2999 29 100.0 36 ............................. TTAATCATTTTTGCCTTTTCCCTGGAAACTTCTTCC 3064 29 100.0 36 ............................. AAATATCCAGCATCCTGAAAGCGATAAGTTTCCGTT 3129 29 100.0 36 ............................. GTCTGAAATTCTGGCGTGATTTGTGCCAATCTTGTC 3194 29 100.0 35 ............................. TTGGCACATAAGACTTTTGAGCATTGGCTTCTTCC 3258 29 100.0 36 ............................. TATCCAGCAGGTGGATTGCTTTCGGCATCTTCCCGA 3323 29 100.0 37 ............................. ATTCTGGACTAATTGTTGTTGCTTTGCAGAAACTATC 3389 29 100.0 36 ............................. TGAGGTATTCTACAGATGTCTATTCATGTACAGCCG 3454 29 100.0 37 ............................. ATGCTCAATTGGTTCTTTTTCAATAAAGTTGATTATT 3520 29 100.0 36 ............................. TAAACTGATTACGCAAAAAGTTGAACTTGCAGCTCT 3585 29 100.0 36 ............................. ACAATTTCTTCTTCTCTTCTAAAATAGCTATTGCCC 3650 29 100.0 36 ............................. TTCAAGGCTTTGGCGATGGTTGTCAATTGGCCATAG 3715 29 100.0 36 ............................. AGTTTCTGGCAAATCAACTTATCCTTATAGGAGTTA 3780 29 100.0 36 ............................. TTGTTAGTTAGAAATTAGGCAATTCGTTTAATCTCA 3845 29 100.0 37 ............................. TGAATAACGGGGTGAAAGCCTATACTTCTGCATTAGG 3911 29 100.0 34 ............................. TGAAATTCCTATTCAGTTTTCGGGCAACCAAGGC 3974 29 100.0 36 ............................. ATTGCGGTAGCGGTTTGTATCAACAAAAATTTGCGA 4039 29 100.0 36 ............................. TCGAACAATACTTTTACATATTCGCTTGAATGTTTC 4104 29 100.0 36 ............................. ATCTTTCTGTACTAATTCAATAAGGCTCAGATACAC 4169 29 100.0 36 ............................. TCGAAATATAGGGCGTGGTAGTGAAGGTACTATTGA 4234 29 100.0 36 ............................. GCGCATTCTTTTGCTTATCAATAGCATCACGCTCAT 4299 29 100.0 36 ............................. CGAATGGCACAGGTTGGGTTGGTGATATTCCGGGAG 4364 29 100.0 36 ............................. TAATCTTCTAAAATCTCACGTGCGCAATTGATAGTT 4429 29 100.0 37 ............................. TAGATAATAGGCTCAAAGAAATTGCCTTCAGCAGTGG 4495 29 100.0 36 ............................. CTCTTAATATGTACAGGTGGGGCAGTCAGTTCATTT 4560 29 100.0 37 ............................. GGCTTTTCTTTGTCTTGGAAATTCTCTAATTCGTAAA 4626 29 100.0 38 ............................. TGGGAATATCACCCAAATCACCGCCTTGGTTTCTGGTT 4693 29 100.0 36 ............................. TCATAAACTTAATCATGCTCCGCTGAAGCATAAACT 4758 29 100.0 34 ............................. CTATAACGGGAAGTTGATTGACCACAGGTTTTAA 4821 29 100.0 36 ............................. GTTGGAGAAATATCAGAGGGAGTTGGTTCTGGCGTT 4886 29 100.0 37 ............................. TCAAACTTTTTGGTCGGGAAAATGTGAGTGCCGGATT 4952 29 100.0 36 ............................. TAACTAATGTTTAAATAAAATATTTTTACTATTAAT 5017 29 100.0 37 ............................. TGAACGAAGAAAACGACTTCAAACATAGACCCTGGCA 5083 29 100.0 36 ............................. GTTGTCGGGACGAATCCCTTCAACTTGACAGTATTT 5148 29 100.0 36 ............................. TAAAAAGCCGGAATCGATAAAGCGGTTTGTGGGGTT 5213 29 100.0 35 ............................. ATGGTTGGTTTCTACGTCAGGATATTATCTGGCAT 5277 29 100.0 36 ............................. ATCCTGGGCAATAAGCAACCCTCATACTCTTCATCG 5342 29 100.0 37 ............................. GTCGAACACTCTTTTTGCCAGTTTTCATCAAAAGGCT 5408 29 100.0 36 ............................. AAGAAAGTTCAATTTGTGGTCATTTTCATCATACAA 5473 29 100.0 37 ............................. AAGAAGGGAATTGGATGCCTGTAAATGCCATTATGAA 5539 29 100.0 36 ............................. GTTCGGTTTTGTTGATGGCAAGTTTCTTTATGAATC 5604 29 100.0 36 ............................. CCTCCTTTTTAATTTCTCTGCACAACAAACAAGCTT 5669 29 100.0 36 ............................. GTTTATCCTCTCAACTTCGCAGCTTCGCACTCAAAC 5734 29 100.0 36 ............................. CTCGTTGTAGTTCTCCGAATCTGAGGTAAGTTCATT 5799 29 100.0 35 ............................. TACCTACCCTTTTGCCGTCCTGATTCCTTGTCAAG 5863 29 100.0 35 ............................. CGCAGGTCAAGATAACCGCCTACAGACAAGCCCTC 5927 29 100.0 34 ............................. TTTCGTGGGGTTGGTAATAGTTGAACTAACCTGG 5990 29 100.0 37 ............................. TTAAAGATAATGAATTAACAAAACAGCAACTTATTTT 6056 29 100.0 36 ............................. ATAAAGGAGATGTAGTTTTTACTCCGTTTATGGGTA 6121 29 100.0 36 ............................. CACCAGTCGAAGCGATGCGGGTTGTCAATCAAGTTT 6186 29 100.0 36 ............................. TTTCAGCTAAAGTAGCTCTTAAATTTCTAAGATAAA 6251 29 100.0 37 ............................. ATGGATTTCATGGCAAGATTTAAGAATTGAAAACGAA 6317 29 100.0 36 ............................. TTACCGAAATCAAGAAGGTTTCGAAACCTCACGATA 6382 29 100.0 35 ............................. ACGTGCTTTGGCAGATTCTTTTGCCTTCTCAGATT 6446 29 100.0 36 ............................. AGATTTAAAATTTTCTAATTTTTGCATTTCCTCTTG 6511 29 100.0 37 ............................. TGAATGAGTTAGAAGTAGAAGGGCTGTAAGGTGCACC 6577 29 100.0 36 ............................. GTAACGGAAACAGACAGGTAACAGGTAGCAGTATTA 6642 29 100.0 37 ............................. ATTTGGTGTGTATCTGATTCGTCGTAAAAAAACGACC 6708 29 100.0 37 ............................. TTTGGGTATTTCTTCATCCTCTGTTGAAACTTCTCTA 6774 29 100.0 37 ............................. ATAATTTCTCTTATTTTATTCTTTTGAATTTCAGGCA 6840 29 100.0 35 ............................. TAAAAATCACAGAAAGCCTTCATACGCTTCGCAAA 6904 29 100.0 36 ............................. CTTATTACCATAGCCCTAAGGATACACTTAAAAAAG 6969 29 100.0 36 ............................. TCCTGTAGATTATCGAAAGTTATATCAGCAGCCTTT 7034 29 100.0 36 ............................. AAAGCAGAACCAAGTTTGTTTACTTGGACGAACAAA 7099 29 100.0 37 ............................. TTTATCCTTGATTCGTGTCATTTTTGCCGAGGGCGTT 7165 29 100.0 37 ............................. ACCGTACAGAATCATTGCCATAGAACATCAAACTGGC 7231 29 100.0 35 ............................. ACAATGAAAGTGGTGATACTTCTTTTGTTGCCTTG 7295 29 100.0 36 ............................. TTCGCACCACGCCACCGTTTTCCAACCTACTTGTCT 7360 29 100.0 35 ............................. TTTGATGAGGCAAGTTGCAGGAGTTCTTTGCATAA 7424 29 100.0 36 ............................. TTTTGAGATTAGTGCACGTTCGTAGGTTGCATAGCG 7489 29 100.0 36 ............................. TTTTGTTATGTTATTTTTAAGTTGAACTATCTAATC 7554 29 100.0 36 ............................. ACCCCACGAAACGGAATAACTGGCGGAATTTCAGAG 7619 29 100.0 36 ............................. TAGCCTTGACAAGTCTCCATGCCTGACGAACGGCCT 7684 29 100.0 36 ............................. AAACAATTCCCTATAAGAATGATGCTACGCATGGCA 7749 29 100.0 37 ............................. ATCCCCATCAACGAAGAATGGCTTTTGAAGTTTGGGT 7815 29 100.0 36 ............................. ACAGCCACCACCATAGGACCGACAGCGGCAGTAATA 7880 29 100.0 36 ............................. TTGAAAAACCTAAAGTGGTGCCACCTGCTCCACAAA 7945 29 100.0 36 ............................. TTGAATCTCATTAAAGAGTCCGTAAGTGTAGAATTT 8010 29 100.0 36 ............................. TTATTAGGAAGGAAAGAGAAATTCTTCGACACCATA 8075 29 100.0 36 ............................. TCGGGATTTTTCAGAACAGGAGACTGAAATCCTGAA 8140 29 100.0 36 ............................. TTGGCGTATTCGTTTTCAAAATGCTGATCGTTTTTC 8205 29 100.0 36 ............................. TATTTTTGGACTTTTGGAGATATGTTCTGAGGTTTG 8270 29 100.0 37 ............................. ATTCCACTTTGATAGGCAATCCGCATTACTTCAGGTG 8336 29 100.0 36 ............................. TTTGTGAAATACTTAATCAATAAATTCGTTGATAAA 8401 29 100.0 38 ............................. ACAGCAGCCAATGCAGGTGAGTATTATTGTAAAGCAAC 8468 29 100.0 37 ............................. CTCCCTTGCGCCTGAGCGTCATTTTGTTTGCTATAAA 8534 29 100.0 37 ............................. CTCCTACATTAATCAACCCTTATTTTATTCTTAGTGT 8600 29 100.0 36 ............................. AAGGGGGCTTATAGTAGGTAATTTGGTGCAATATTC 8665 29 100.0 37 ............................. TCTGTTCTTGTGTTACCTCTTCTGCCTGCACTTCAAT 8731 29 100.0 37 ............................. TATTTATTTTCAATATAACGTTTTACTTCATCACGTC 8797 29 100.0 36 ............................. GATATTGATAGCTAATAGGTGAAGGATTTCCTACGT 8862 29 100.0 37 ............................. CAAAGAAGGCTATTTTAGAAGCAATAAAGAAATAAAA 8928 29 100.0 36 ............................. TTTTCTTAATATCGTCCATTGCCTTGGTAGCCTTTT 8993 29 100.0 36 ............................. TTGTTTTTCTTTGTTCGTTCGAGCTTATAAGGCATT 9058 29 100.0 36 ............................. ATTCAATTCATGGTTGAAGTGAAAGCCAAAATACCA 9123 29 100.0 36 ............................. TTTGAAAAATAATTTAAGGTTTTAACACAACGTTAT 9188 29 100.0 36 ............................. GACCATAGGGTAATTAAGATTAACAACAATAGATTA 9253 29 100.0 37 ............................. TGAGCATTTAGTGCAGGCATACACGCTTCACGAATAG 9319 29 100.0 36 ............................. CGCAGGTCAAGATAACCGCCTACAGACAAGCCCTCT 9384 29 100.0 36 ............................. ATGAGTCTACTGAAACTAATCAAGTCCTTACTTACA 9449 29 100.0 36 ............................. TTCTTCTTGCGTTTTCTTCTATTGCACGGCTTACCT 9514 29 100.0 36 ............................. TATCAAGGTATACGGTAACTACACTACATGAGTTTA 9579 29 100.0 37 ............................. AATACACCACTAAAGGGAACGGAGTTGAAGAAGATGG 9645 29 100.0 36 ............................. CTCAATTCCTAAAACCTCTGCTACTTGTTTAGCAGT 9710 29 100.0 35 ............................. TTATCAGGCTTTCATCGGTATTTAAATCTGTTAGT 9774 29 100.0 35 ............................. TTCATAGGCAGCGGTCGGAATCTCAGCCTCAAACA 9838 29 100.0 36 ............................. GTTTTGAGGATATTTCTTGCAGTCAATTGGCATATT 9903 29 100.0 36 ............................. AAGATGTTTACGGGTTTTTAGCTGACTGCGTAGAGG 9968 29 100.0 36 ............................. GTTTTTCAATCCGGGTATGTTCACCCAAAACAGGCT 10033 29 100.0 36 ............................. TGATATTATCTACCTGCCTGCCTGTGGGTGCTGTCA 10098 29 100.0 37 ............................. GTTCGGTATAGTCGTTTTTCGGCTTGATTCTGACAGT 10164 29 100.0 37 ............................. TTTTGACTACCGTAATTTACTTTTTGTAGTAAACGTT 10230 29 100.0 36 ............................. ATTTAAAGAAACAGGTTGTATGTAAGCTCTAAAATA 10295 29 100.0 36 ............................. TTATCGTCAAAAGAAGTTAAAATATCAGAATTAATT 10360 29 100.0 37 ............................. TAGATTTAAAATTAGGAAGTTCTCTAAATATCACATC 10426 29 100.0 35 ............................. GAACTTACTATTTGCCGTAACAGAAGTGTTTAGTA 10490 29 100.0 36 ............................. CGCTTTGGCATTTAATTATTTGCTGCTTAATTTCTT 10555 29 100.0 36 ............................. ATGGTCATAATTAGCCGATTGAGAGAGTCAATTTTT 10620 29 100.0 34 ............................. CACCGGCGGTTTTTATGTTAGGGTTAATCCCTGA 10683 29 100.0 36 ............................. TTCCCTGTAGAAATGGAAGCGACACCTGTAAGTGCA 10748 29 100.0 36 ............................. ATCGACAGCACAAAAGCGTTTTAATGCTTTAGAAGA 10813 29 100.0 37 ............................. TATATTGTGATAATATCTCTTTGTCTACAAGACCTAA 10879 29 100.0 36 ............................. TATCATAAAGATATTGAGAGTTTGTAACAGGGTAAT 10944 29 100.0 37 ............................. ATATTTAGCCCTATAAATGCTCTTTACGTCATTAATA 11010 29 100.0 37 ............................. GAAGTAAAAAATCCCACAAATAATTTCTTCTTACAGT 11076 29 100.0 36 ............................. AGCATATACTCACACCACAATCTTTGAATAAATACA 11141 29 100.0 36 ............................. GGTTAAAAAGTGAAGAAAATGGCAAGTATAAAAAGT 11206 29 100.0 37 ............................. AAAAAGGCGTTGACAGCTCCATCGAAAAAGCCTTCGG 11272 29 100.0 36 ............................. GTAGTCGAAGTGATTTTTTTTTCTTCCTCCTGCGCT 11337 29 100.0 37 ............................. TTCATATAGCCCCACTCACGCACACCAACCACCGCCT 11403 29 100.0 36 ............................. TGTCACAATTAATAGGACAAAAATATAGACTTGAAG 11468 29 100.0 36 ............................. CTCTTTAAATCCTTTCGGAACATCGGAAACCTGATT 11533 29 100.0 37 ............................. ATTCTTACTTGCTCATTGGCTTTCAGGTCAATTAGGG 11599 29 100.0 35 ............................. AAACGTTAAATCACATATAGAAATTGAGAATGAGA 11663 29 100.0 37 ............................. TTTTCAATAACCAAACTCGCAGAATCCAGGTTATGCG 11729 29 100.0 36 ............................. ACTGTACCACCATCAAAGCTGACACTACTAAAATTA 11794 29 100.0 35 ............................. AAGCGCACAAAGTGATAAGCCCCCCGAATCTCTGC 11858 29 100.0 36 ............................. TGTGGCTCAATGGTATTAATAATCCGGAATACTTCA 11923 29 100.0 36 ............................. AGAGTTTGAAATAATACTTAACGACTTCGCCGATTG 11988 29 100.0 37 ............................. TTTTCAAAACGTTCGTCTTGCACAAAAATAAACTCAG 12054 29 100.0 37 ............................. TGAATAACCGGCTATAAAAAAACGGCGCCTATTCACA 12120 29 100.0 35 ............................. TTTAAACTCGCTCGCGCTCGAACAGGAAATGGTCG 12184 29 100.0 36 ............................. CCCGTCAAACAAGCAGCAACTACAGGCACAGTTATA 12249 29 100.0 36 ............................. TTTGGAGAGGGGGATTAGAATTTAATGTTCAACTTA 12314 29 100.0 36 ............................. AAAAGGACGGCACACGTAATATCATGATTCGTATTA 12379 29 100.0 35 ............................. ACTGCTCTACCCCGCCATGTTGTTTACTCTTAAAT 12443 29 100.0 36 ............................. ATTTTTTTTGCAAAATCTGCTTGGGTCATTTTGAGT 12508 29 100.0 36 ............................. CAAATTGAAGCTATTCTTGAAAAACAGTTGTACAGG 12573 29 100.0 36 ............................. TTAGGTAGTGAAGTACAGGCAATTATCAAGCCCTTG 12638 29 100.0 37 ............................. AAAAAACACAAGAATATGCACCCGAATATCTATGATA 12704 29 100.0 36 ............................. AATTTTGAAAATGGCTCTACAATTATTGTGCTGCGA 12769 29 100.0 36 ............................. ATTCCAATTGCTCAACCGTTTGGGCATTATTAATGA 12834 29 100.0 36 ............................. TTGGTAGCGAAAAGAACCATTCGTTTCTCGTAAAAC 12899 29 100.0 36 ............................. GTCTTGGGAAAATTGTTGATTCGTTGCATGGCTATA 12964 29 100.0 36 ............................. TACCGGTATAGATTTGCTTGAAGCTCATGCAGGTGA 13029 29 100.0 35 ............................. AAGAGCGTGACGAGTGGAAAGCCAAAGCTGAGGGT 13093 29 100.0 36 ............................. TCAACGATGAGCTGAAGCGCAAGGCTCCGAACGCTA 13158 29 100.0 35 ............................. CTCACCCGGCGGAACCAGCGATGGCAACTACATTG 13222 29 100.0 35 ............................. GTTGCTGAAGCCTTCTCCATCATTTTCGATGTCGT 13286 29 100.0 37 ............................. TTTTGATTTCTAACTCAGCTTTGGCTTTGGCCGCTTC 13352 29 100.0 37 ............................. GATATTGTCATCAATTTAATTTCCATATTTTTCAAAA 13418 29 100.0 36 ............................. AAAAACTTATCTTACGGTTTCACCTGCCGCCGGAAG 13483 29 100.0 35 ............................. ATAAATATTGTCAGCACTATCAGAGAAGTGGGGAG 13547 29 100.0 36 ............................. CTTTCTTTCGCCATCTACATCAATCACATAGGCATT 13612 29 100.0 36 ............................. TCTTCCCGGCTATCTACGATTTTCTGAATAAATACG 13677 29 100.0 36 ............................. CTTATCTCTAATTTTTCAGTCAGAGTAGTTACACCT 13742 29 100.0 35 ............................. TTTGCTTGCATCAACAGGTTTTTTGTTCCCGTCTA 13806 29 100.0 37 ............................. TCACCGAAGAATGGCTTTTGAATATGGGTTTTACTTA 13872 29 100.0 37 ............................. TAGGTTGCCAAACTGTCCACAGCACCAAGGCTGTTCA 13938 29 100.0 36 ............................. TTTGCCTTTGTTGCATCGTCTAAAAGCTGTGATTCG 14003 29 100.0 36 ............................. CAAGTGGCGCACTAAGCACTTATATAGGAGTTTGGG 14068 29 100.0 37 ............................. TGCTCAAACACCTACGAAACAAAGAACGTTTCTCGTT 14134 29 100.0 37 ............................. TACAGTGCCGTTGAAATAGCAAATTACATGGAGTGTA 14200 29 100.0 36 ............................. TGCCATCCAGAAAATTAGTTGCTTTATAGGCCATCG 14265 29 100.0 36 ............................. ATATCAGGAAACAGAAAAATCTGCTACGCCAGTTCA 14330 29 100.0 36 ............................. AAGGTCTTGCCTTTTCTGCGGCTTGCCCTTCTGTTT 14395 29 100.0 36 ............................. TTTCAGATTGGCTCCACTGTTGGCCTGGCTCACAGT 14460 29 100.0 36 ............................. TTAGGTTATATTAAAAGTTATGAATTTATTCATATA 14525 29 100.0 36 ............................. CTATTATTTGTTCTTCTATCAGGTATATTCAAGTCA 14590 29 100.0 37 ............................. TCGTCCCTGAAATCCGCTTTACTTCAGTATTTTGAAA 14656 29 100.0 37 ............................. ACCATTACCCGATGGTAGTGGTGAAATCTTCGTAAAG 14722 29 100.0 36 ............................. TTGCCGCCAATATTGCAAGAGACGGAGTATTGCGGA 14787 29 100.0 36 ............................. ATTCAATCCTGTGTTCGGCAAGATGAAAAATGCTTT 14852 29 100.0 36 ............................. GTTGCCCTGATAGTTTATTGGTGTTGTGGTAGCTCA 14917 29 100.0 35 ............................. TTGTCATTGAAAATGGCGAAACAGTTTCAACCTGG 14981 29 100.0 36 ............................. ATGAACTCCAGACGTTTACCTCAATATCTTGATCCG 15046 29 100.0 37 ............................. CATTTAGGAGAGGGTATAGAGAAGCAGGAAGAACAAA 15112 29 100.0 36 ............................. TTCTCGGCAATACTAAACCGCCTGTTGTGCTACTTA 15177 29 100.0 36 ............................. AGGCTTGCGTTTGGCGGAAACCCTGTAACGGTGAAC 15242 29 100.0 36 ............................. CCTAATATCCGAAATCAGGCTTTCTGAAAATTGTTG 15307 29 100.0 36 ............................. TTAAACAAAGTTCCTTGAGTGCCGGAGTAAAGTGTA 15372 29 100.0 36 ............................. TTGGAAACCTAACGGAAACCACAGGAAACCTAAAAA 15437 29 100.0 0 ............................. | C [15442] ========== ====== ====== ====== ============================= ====================================== ================== 222 29 100.0 36 CCTCTAATCGCACCTTATGGAATTGAAAC # Left flank : CACCAGGAGAGACAACTATACCTTGTTTCTTTAGCTCATTTGATACTCTTAGCTGTCCATAAGCTGGTAAGTCCAATGCCATCTTGACAACGGCTTCTTCTACTAACGTATCTACCCGATTTTTCTCTATGGGTTTTCTGCGACTAATTTCTTGAAGTGCTAATTCACCACCTTGTTCATAGAGTTCCTTGAAGCGATAGAAACTATCTCGACTATAACCCATTACCTTGCAAGCCTTTGAGACATTGCCTAAAACATTGGCAAGTTCTAATACTCCTAACTTGTTCTTGATGATTTTTGCCTGTGTTGTCATTTGATTTAATCTTTAATTTTAAGTTACTAAATAAATCGTAACTGTCAGATTAAATCATGACTATTTCAGATAATCAATAGTCGTCGGACTCCCGGTAAAAACCTATTACTGGAGTTCGACGATTTTTTTATTTGATTTCACATAAAAAATCGCTTAATTTACGCAAAAAAGGCCATTTTTTGGACGG # Right flank : CTTTTGACAATCTTTTACTTTCAGCAATATCGCTGCGCCTCTCAGTCCAAATGACTTTATTTCAATCCGTAGCCGGGTCTTAATTAGCTATTCTTATATAGTTTTCTGAGTACATACAGATTAATAATTCATAAAGCAGCATAGAATAAAAGTGTTTTTTTGCATTAAATTATTGTATTATTCCTTAACTTTCGCACCAATAAGTTCATCATCAACAGACATTGCTTACGCTCATAAAGGAAATCGTGTGTAAATCACAACTGGCACGATTTAAATTAAAGTATCATGCAGAAAGATACTCTTTTATTCCTCTTCTGGTAAGTAACCTGCTTCTTAATGGAGACAGAAGCATATCTATCAGAAATTATAGAGAAACATACAATAGAAAATCATAATCGCAATACAATGAGTAACAACAAAAGCTTAGAATCTCCCGGTTTACGATTTCGGGAAGCGATGAAAAAAGAAAATCCACTGCAAATTGTAGGAGCAATCAACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCTAATCGCACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //