Array 1 134195-139377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGM010000006.1 Clostridium tepidum strain BSD2780120874b_170522_A10 NODE_6_length_236590_cov_71.6098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================== ================== 134195 29 100.0 36 ............................. ACATAATAGGTAAAACAAGAATTGAAGCAGTACAAC 134260 29 100.0 37 ............................. AAATATTTATCTCTTGCTCCATGAAGTCCACCCCATC 134326 29 100.0 37 ............................. AGTCTTTGCATATCCATTACTAGCACACCAGTATACA 134392 29 100.0 36 ............................. GCTAATGTAATACTTTTATCAGGTACGCCATGTGGC 134457 29 100.0 37 ............................. CGAGAAGGATATGCTGCTATAGATGATTTCGGTAACA 134523 29 100.0 36 ............................. TATGAAGTCCAAAACCTGTTGTAAGCACTTGATTAT 134588 29 100.0 38 ............................. TAGTACTAAAATTAATTTCTCTTTTAGTAACTGGTTGC 134655 29 100.0 36 ............................. TGCAATCTATGTGGAATATGCGTAAATGGTTTCAAA 134720 29 100.0 38 ............................. GTACATCTTCCAATTCTAAAAGTTCAAATTCATCTATA 134787 29 100.0 38 ............................. AATACATTCTCTTTTTTCTCTAGTTGTAGAAATCTATC 134854 29 100.0 37 ............................. TAGTAAAGGAAATGGCTATTAAATATAAAGTTGCATA 134920 29 100.0 35 ............................. ATTCATGTGCACATGTTGATTTTTTATCATAGTAA 134984 29 100.0 37 ............................. GTTAACTTATAAATTTGGTGTGACCATTCTAGTTGCA 135050 29 100.0 38 ............................. GCAAATGAAAAAGTGCAAGAGTTTGTTGAAGATATCAA 135117 29 100.0 37 ............................. GATGGTACTGTAGATGTATTTGACTTTAAATACTCAA 135183 29 100.0 36 ............................. TATTTTTGTGATGCTTCTGATAAGTCCAGTACATCT 135248 29 100.0 36 ............................. TTATTAGGTATTAAATTTATAGTATCAGCTAACATA 135313 29 100.0 37 ............................. GTGGTGGAGGAAAGAAAAATGATTATAGTGCTTTCTT 135379 29 100.0 37 ............................. ATGAAACGGATAATATAAAAAGATCTATGCAGAAAGA 135445 29 100.0 37 ............................. ACATAATAGGTAAAACAAGAATTGAAGCAGTACAACA 135511 29 100.0 36 ............................. TTGGAGTGAGGGTCATGATTCAAATTTAGCTAAAAA 135576 29 100.0 38 ............................. ATACATAGCCTCATTGTCTTCTACAGGTTCAAGTTCTC 135643 29 100.0 36 ............................. TAAGAATCGTATTTCGTGCAAGTGCAGATGTAGAGA 135708 29 100.0 36 ............................. ATTTGCTAAGGTAGCTGGAATGAGTTCTAGCGAATT 135773 29 100.0 35 ............................. ACCACCTACAAATAATAATAATAGTGGGTGGATTA 135837 29 100.0 37 ............................. GAATTTATCTTATCATAAGGTCCGATAAACTCTTTGT 135903 29 100.0 38 ............................. ACTATTGTATTATGACTTTAATTGAATTGGAGGAGGAA 135970 29 100.0 36 ............................. AAAAGGCACACAAACACGTGTTATAAATAATATTTT 136035 29 100.0 36 ............................. TTTAGTAAGACAACTAGACACAGAATGTGCTAGACA 136100 29 100.0 36 ............................. CTTAAATGTGTATATGTACTATAGAGCACCTATTAA 136165 29 100.0 38 ............................. TCAATAATGGAAGCTGAAAGACAAACTGGAATATGTAG 136232 29 100.0 36 ............................. GAAATGGAAGCTAAGAAATTAGCAGTTATAATCCCA 136297 29 100.0 37 ............................. ATGATATATTTTCCTCTCCTAGTAATTCATTAAGTAC 136363 29 100.0 38 ............................. TTTGCAAAATCTATATATGGAGTAGCTGATGGTGCTGG 136430 29 100.0 38 ............................. ATAAAAGATAATGCATTTGCTTTATTAACACCGAAAAC 136497 29 100.0 36 ............................. TATATTCTATTGAGTAGATACTGGTTAGCTGCTAGG 136562 29 100.0 37 ............................. AACAATAAAATAGCTGAAAAATTAGACTTAGCGGAAC 136628 29 100.0 37 ............................. AAGAACAGTTATAAAAGGTGTCAATTGGCAAGGGAAA 136694 29 100.0 35 ............................. TTGGAGTGAGGGTCATGATTCAAATTTAGCTAAAA 136758 29 100.0 37 ............................. CTATTAGCAGTCTTAACTGCTTATCATTGCAACATAT 136824 29 100.0 36 ............................. AGAGTAGAAGTTATTTTGGAGGAAGCGTAATGGAGC 136889 29 100.0 36 ............................. ATGCTAACACTCCCCTTTACAGTTTACGTAAATAAA 136954 29 100.0 36 ............................. TAAATTCTGTTGAGTAAATATTGGTTGGCTGCTAGG 137019 29 100.0 39 ............................. GATAATAAACCATTCGTTAATCACATTGATGGAAATAAA 137087 29 100.0 37 ............................. ATGATGGTGGTAATAAAATAGCACTAGAAACTAATGG 137153 29 100.0 37 ............................. CAAGATGACCTTATGACAGCACAAGTGATAAGTCAAT 137219 29 100.0 35 ............................. GTGACAGAGTGTTTGAATTATATAAAACGAAACAG 137283 29 100.0 37 ............................. TTCGTTAACGCAATGTATTTTGGATTAGCTAATTTAT 137349 29 100.0 38 ............................. ATTATAAATGGTCTGCCTTGTTACATTTAACTTCTTAG 137416 29 100.0 37 ............................. TGCATATATCGTATTCCTTGTTACATTTAACTTCTTA 137482 29 100.0 35 ............................. TCTTTACCTTTTTCAGCTATACAAATCCAATGCTC 137546 29 100.0 38 ............................. AGCTTTGTAAGACAGATAACTGAAATGGATATAGACAA 137613 29 100.0 36 ............................. CTAATGTATCACAATGAAGGTCTAATAGTTGCGACA 137678 29 100.0 35 ............................. GTAATTACTCTATTTCCATACGTTGCTTCTACTAA 137742 29 100.0 35 ............................. GAGGATGAAAAGCAATTTTTAATACACACTTCTAA 137806 29 100.0 36 ............................. ATAAGACTAAAACAGCAGATAAGTGGGGTGTTTCTG 137871 29 100.0 38 ............................. GAGATGGTTTGCCTAGAAACATTTAAAAACTTTCCAAG 137938 29 100.0 39 ............................. ATTTGTAGATTTAAAGAAATTATCTAAACAAGAGATAGC 138006 29 100.0 35 ............................. TTGGTTCTGGAATAACTTCTTGGAAAATTTCTTCA 138070 29 100.0 37 ............................. CCTAAAATTTAAAATCAGTGTGGCTTTTAAGGTAGCC 138136 29 100.0 36 ............................. TTAGTCTTGCATAGAATATAATGGGAAGAAGTATGA 138201 29 100.0 36 ............................. GGTGATAGGGTGTTTAACACTATGGCTTACACATTA 138266 29 100.0 38 ............................. TTGTACTTGGGGGTGTGATATGGATATTTATATATTTA 138333 29 100.0 36 ............................. ACAAAAGATTGCTTTCAAATAATTACGAATGAAAAA 138398 29 100.0 37 ............................. TCCATTACTAAAGTAGCTAAAGTAGTTGGAGATTTAG 138464 29 100.0 38 ............................. CATAATTCTTTATTTAATCTTGTATCTGTTATGCTACT 138531 29 100.0 40 ............................. TTCTGAAACAGTTTCAGGTTCACTTTTTTTAATTCTACGT 138600 29 100.0 38 ............................. CACTGATTTGGCAAATATAAAATTATTAAACTAGCAGA 138667 29 100.0 36 ............................. ATCATCAGTATCTCTATATACTCTAACAGTTTTACC 138732 29 100.0 36 ............................. TGAATACATATTCCTTTATTATTTAAGTATCTAAAC 138797 29 100.0 36 ............................. ACGCTATAGAGTTAGCTATATTATATCAATATGCTT 138862 29 100.0 36 ............................. ATTCAACACTATGATGTTAATGATAAAGAAAAATAA 138927 29 100.0 36 ............................. AAAATTTACAAGAGGTGAATTGAATGAGTTTATATA 138992 29 100.0 36 ............................. ATTTTTATACCTTATTTTAGAGCAATGGATAATTAC 139057 29 100.0 36 ............................. GCGACATTTATTGTAGATGAAATGGGTGCTTTTAAT 139122 29 100.0 37 ............................. ATTGTGAAACTGTAGAATCCTTAAAGCTATTAAACTC 139188 29 100.0 130 ............................. TTTTAAAAAATTTTTAAGTTGTTGGGGAGTTAAATATAGAATTTCTTTACTAGATTTAATTTTTATTAAATCTAGTTTGAGATTATCAGAAAGAATTTATATTATAATTAATAAAGGTAGAAAAAAATTT 139347 29 75.9 0 G......T...TT.....A..T.A..... | G,G [139351,139367] ========== ====== ====== ====== ============================= ================================================================================================================================== ================== 78 29 99.7 38 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : TGAATTACGTTTAAATAGATTGGGATAAAATAGGTGGCGATGATTTATGTTTGTTATATTGACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAGTTACTTAAGAAATATTTAGTTTGGACTCAAAATTCTGTATTTGAAGGAGAAATAACAGAAGGAAAGCTACATAAATGTCTTTCTGATGTTAATAAATTAATTGAGAAGAAGTTTGATTCAGTATATGTTTATAGAGTAAAAAACTCTAAAAATATAAAAAAAGATGTAGTTGGAATAGAAAAAAGTTTTGATGAACTATTTTTATAAGTAATTTTGCATTAAACCTAAATTTAAATTAATTAGGCTTAAACCATTGAAATTACTAGGTTTCTTCACAATAAAAAGTGAATATTAAAAACGCTAATGAAGGTTTACTGCAAAATGTAGAAAATATGATAAACTCATCATTGATGTAAATCCAGTAATATCAGTGCTTACAGACTTTTAATATTTTGGG # Right flank : TTTATTATATGAAGGATTTTTAAATTTATTATAGAATACTTAGTGTAGTCAATTAATAAAATATTATATTTTATTTGATTAATTTCTTAATAGGGGATAAAGTATAGAGTTTTTAAATTCAAGGGGAACTTTTACTTTTAATAAAACTTATAAAAAAGTTATATACCAGCAACTGATTCTTATTTTATTGTTACTTTTCTCTTAAAAAAACTTATAAAATAGTTATCTAAAGATATAAGAGTAATTTTTATTTAGCTGATGGAGCAATTTACATAATTTATAATAGTGAAATTGCACCAAAATTATTAAGTTATCTAAAGGTATAAGAGTATTTTTTATTCTTTGATAATGGGGGATGGTAAGATATTTTATTTTTGTAGAAAGGTACAAGCTGGCTTATAGCGATTTATATGGACAAGAGTATGGTAAGTTCTTTTATTTTTGTAGAATTAAAATTAAATTAGAGTTTTAAGATAATATTTTTAAAAATATTTAGGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //