Array 1 44856-45675 **** Predicted by CRISPRDetect 2.4 *** >NZ_AROQ01000036.1 Salmonella enterica subsp. enterica serovar Newport str. SHSN007 contig2_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44856 29 100.0 32 ............................. CCATGATCCTGCTTATCGATAACTATGATTCC 44917 29 100.0 32 ............................. GCTCGCGCGCAGTACGAACAGGCGCACCGGGA 44978 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 45039 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 45100 29 100.0 32 ............................. GATCGCTCATGATTGATCGAGCTGGTGGCCAC 45161 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGGCAG 45222 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 45283 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 45344 29 100.0 32 ............................. TCGATATAGCAACTTTTTTAACTATTGCGTGG 45405 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 45466 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 45527 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 45588 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 45648 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62222-63532 **** Predicted by CRISPRDetect 2.4 *** >NZ_AROQ01000036.1 Salmonella enterica subsp. enterica serovar Newport str. SHSN007 contig2_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62222 29 100.0 32 ............................. CGTCTGCGCGTAACGCTGCGCGGCGTGGATCG 62283 29 100.0 32 ............................. TGCTCACTAACGAGCGCCAGCAGGTGACGCTC 62344 29 100.0 32 ............................. AATTCTGACTGTGATGATGCCGGAACGCTGAT 62405 29 100.0 32 ............................. GGTCGTCGAAACCACTTGTTATGACCGGCATT 62466 29 100.0 32 ............................. GGAGTGTTTCAGCGCCGATGCAACGAAAAGTC 62527 29 100.0 32 ............................. TGCTCCAGTGGGCTGCTAAGGGGCTTGGGGGG 62588 29 100.0 32 ............................. CCGATTTTCAAGATGCGCGTAACGGTCATTAT 62649 29 100.0 32 ............................. CTGCCGCTTCTTTTCTCTATACAGATCTTAAA 62710 29 100.0 32 ............................. TTAACTCCACCGTATCGCCAACCAGTAATTCT 62771 29 100.0 32 ............................. ACCAAAATCCTGATCCCACGTTACGGCCCACA 62832 29 100.0 32 ............................. ATTTAAATGACGTGCAGGAATACTGGATTCAC 62893 29 100.0 32 ............................. AAACGCTCCCTCACCGAGCAGCGGCAAACATA 62954 29 96.6 32 .............T............... AGTTCAACCGATTTTTTACACGGCGTTCGCAC 63015 29 96.6 32 .............T............... ACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAA 63076 29 96.6 32 .............T............... CGTTGGATGACCTGCTCCTGGATACGTGGCAA 63137 29 93.1 32 .............T...........T... GCAAAACCACGTGGCCGCGACGGGGTAAATAA 63198 29 96.6 32 .............T............... CCGACATCAACAGCATGGCCTACGTGTGTAAC 63259 29 96.6 32 .............T............... GCGCGGGAACGTGGGATGATGCCAGGACCATC 63320 29 96.6 32 .............T............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 63381 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 63442 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63503 29 93.1 0 A...........T................ | A [63529] ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGAGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //