Array 1 58-429 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZPK01000234.1 Methanosarcina sp. A14 contig_350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================== ================== 58 37 100.0 34 ..................................... TTCTCGTCAAGAAAGAACTCCCATGACTTGAGGG 129 37 100.0 36 ..................................... GGAACTATATGGACTACATTGTCACCGTCTAGATAT 202 37 100.0 38 ..................................... ACAGGGCGTCCTCTTGGAAAGCTCATGATAGGTCACGT 277 37 97.3 75 ..................T.................. ATACAGCTTTTGGGCATACATTCTCAGAAAACTCGATTCGTGAGCAATGCTTTTTAAGTAAGTTGTGTATATACT 389 37 91.9 0 .....C............A.....A............ | G,AAA [415,418] ========== ====== ====== ====== ===================================== =========================================================================== ================== 5 37 97.8 46 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CTCTAAAACAAGTATTGAAACACAGATATCATTTTACGTGTGGAGACTTTCAAAATTA # Right flank : CTTTTATATTTTTGCGAAGTATATCAGGCGATGAAAATGCTAGATTTCCTTAAAAATTTATTTGGTAGTAAAAATAATAATAAAACCCAAATAAGTAAGCCAAAATATGTTAAGGCGTTTGGAGATAGAGTTATACACTGTAACATGGCTCGCATATTTACCGGAAAAGTAACAAGTGTAGGTAACTGGGGTAATGATTACGAGAGAAATTATAGGTATAATGTAATATCGGGTAAAGTTAAAATTAGAAAGTTAAAAGCTATAACATTACATAGGAGCTGGGGTGGCACAATTAAGTTTTTTATGTTTTATCCTGTTACTGGATATGCAGAAATAGAAGCCAACGGTACAAGAATTATGTTACACAAATATAATGGATACGGAAAAAAGATGATTTATAAGCAGAAATTAAGATTATGATTTTTACTTTTACTAAGTAAGACACTTTTATAGTAATAGTTATCAGTTTGTGAATATATCTATTTTCAATATAAAATTCG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 3472-4381 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZPK01000234.1 Methanosarcina sp. A14 contig_350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3472 37 91.9 36 .............AG....C................. CAGATTTAGCAACGACCATATTTTGTTCTCAATCGC 3545 37 91.9 36 .............AG....C................. GCCAGATTCTTGTAAGCATCTGAAAGATTATTAAAA 3618 37 100.0 36 ..................................... TTTGAGGAGATATATCTACCAGAGCCCATGTCTCTG 3691 37 94.6 36 ...........A........T................ ACTTATTTCTTTTCCTTTTCCGTCATATATTTTTAT 3764 37 97.3 38 ...........A......................... ATTAGAGTTGCCTCCTTCAATCTTTGGTCAGATTTAGG 3839 37 100.0 36 ..................................... TATTCTTTGCTTTCTTGAACCGAAGACTGTATTCCA 3912 37 97.3 35 ...........A......................... AATTTCAGACTTTGTCGGTTGGTTTTCGAGTTTCT 3984 37 97.3 35 ...........A......................... CTTTTCTCTTCCCAAACTTGTCTGCTATTTTTTAG 4056 37 100.0 36 ..................................... TAGTTTTCATCAAATTTCTCCTCTTTATTTCTAAGC 4129 37 100.0 36 ..................................... TATTATATCTCTAATACAATCATTCATATTTTCTAT 4202 37 94.6 36 A.................T.................. CCGTACTCTGATACCATATTAAGTCATCCCTGAAAT 4275 37 100.0 35 ..................................... TCTTTTCCAAAGAAAAGATCATTTACCCGTCTAGT 4347 35 86.5 0 ...A.T.............-....-..........C. | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 96.3 36 GTCGAGAAGTAGACTCCACGAAAACAAGGATTGAAAC # Left flank : TAAAAACCGAATTCTGGAAATTGTACTTCCGTTTTCCTGAAGAATCACGCTTTTACTCAATTTGAGTTTTTAGTTTTCAAAAAAGCAATATCAATAAGTAACATTTAAAATAACTAGCTTGAAGTATTTTAAAAGAACACCTTCTTTTTTCTTTTGACCAAAGATATGAAATTCACAATTGTGTGAGACTGTCATCATTTAACTAAAAGTTAAAATGTATCTTTCATATTCAACTTCGTAAATTATTTTTTAAAAGTGATTACATATGTACATTATCAAATAAATAATTTTGATATCCTATAAGCGAAAATGCAAAAATTTAAATGGTACCCGTCCTTATATACCCTTTAGCTATTTGTCGACGACCAAATTTAGTTAACCAAAACAAAAACAAGTATATTTCAAATATTAGACAGTTCAAACAAAAAAGAAGTTTCTTGATGTTTGTTTTTAGGTTCTAAATTTCCAGAGAATTTGTTGAAAATCAGGAAAACGGTCCT # Right flank : CTTTCTCTATGGATATCTGTCTCTGTTTTTATTGAAAAACAGTTCCAAGAAAACACGTATCAAGACCTCTAATTCGGAAAAAAGCCGAATTCTTCGCAGCTAAATATATCAAGCTCCGTAGATGATTGAAAATTAAGAATCATTTACGGAGGTATCTGAGATTCAGAAGCAAAAACTGGCCGAAATTCAATTAAAACTGTATAATAAAGCGAAAAGGAATCCTGAAAAGCGGTTTAAAAAACTTAAAAAGCTAATTTTGAAAGACGAAGTTCTTTACACCGCTTGGAAGAATTTGAACAGAAATACAAAAGGAACTGGTTTTGATTCTCTGACTATCCAGCAGGTAGAGGCTTCAGGGGTTGAAAACTTCATCCGCTCGATAAAGAAAGAACTTAAAAGTGAAAAGTACGCTGCTGGCGAAGTGAAAAGAGTCGAAATTCCAAAAAAGAACGGTGAGACAAGGCAGCTTGGAATTCTTACCTTAAAAGACCGGCTTGTCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAAGTAGACTCCACGAAAACAAGGATTGAAAC # Alternate repeat : GTCGAGAAGTAAACTCCACGAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 9141-10634 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZPK01000033.1 Methanosarcina sp. A14 contig_131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9141 29 100.0 32 ............................. GTTCAAGGGACCTTCTGGACATGTCTAGAATT 9202 29 100.0 32 ............................. GTCCCTAACAACGGCCTCACTAGTGTACATAA 9263 29 100.0 32 ............................. ATGCCTCTTGTGTATATTCCCTGATTGATGTT 9324 29 100.0 32 ............................. TAATAATAGAGTGCAAACTATTTAAAGATGTC 9385 29 100.0 32 ............................. GTTCTATCAGACAAAGACAATAAAGAACTTGG 9446 29 100.0 32 ............................. TTCATAACAATCTCCGTTTTTTATCACTAGGT 9507 29 100.0 32 ............................. GCGGCAAACGAAGGGTCATGGCAGGCATCCGC 9568 29 100.0 32 ............................. TTTTACAGTCAGTTGGTGCGGTTAATTCATAT 9629 29 100.0 32 ............................. CTGACGGGAGTGTAGGTGAAGAAACTGCTCTG 9690 29 100.0 32 ............................. AGATTGAACAGGATGGAAAATGTTATTGTGAG 9751 29 100.0 32 ............................. TTCCCCATCTCCTCTGCACTGGCATGCCGCTG 9812 29 100.0 32 ............................. TTGTACCGCAATATCATAACGGGAACTAGAAA 9873 29 100.0 32 ............................. AGTCACGGACAAATTACGTGATTGGTCTTGAT 9934 29 100.0 32 ............................. TTGCATTAGAAGTAATCAAAATCTGTAATGAC 9995 29 100.0 32 ............................. CCACAATGAAAATGTCATTATGCACCCTCCTC 10056 29 100.0 32 ............................. CATCGTTTTACCAGTACCAAACGTGCCATAGA 10117 29 100.0 32 ............................. CCCCGCTTGTCAACCCGTCGACATATGCATAA 10178 29 100.0 33 ............................. TTGGGAAGGAGAATCCACAAAGAACACTGAAAC 10240 29 100.0 32 ............................. AGATATGGAGAAGTAGTGTTTGAGACTAGGAT 10301 29 100.0 32 ............................. CTTAACGTCTCTATGAATCCTAGTCTCAAACA 10362 29 100.0 32 ............................. GATTCTGTGATTATTCGTATTATCCGCGATAC 10423 29 100.0 32 ............................. TTTTCCCTCTGGCATTTGATTTCCTATAGCTG 10484 29 100.0 32 ............................. GAATTTTGTGGGAAATGGAAAGGATATGAGAA 10545 29 100.0 32 ............................. GATGCATACCTATCGAAATGAGAACCGATTCT 10606 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GAGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : TGCAGGTGCTCTTCCTATTCCTGAAAAGCCTCCGGAATCCATTCCTCCTGCAATTCCAAATGAAAGGGGACTTAATGATGTTGGTCATCGTCCTTGAAAAGACAACGCCTCGGCTAAGAGGAAGACTGACGCTCTGGCTTCTGGAAATTAGGGCTGGAGTATATGTAGGAGAGTATTCGGTCAAGGTAAGGGACATGATATGGAAGAATGTAGAAACCGAATTCAATGATGGAAATATTGAAGGAAGCGCCATTATGATCTGGTCCGCAAGAAATGAAATAGGATTCGATTTCAAAGTTCTCGGCGAAAACCGCAGAATTCCAAGAGAAATGGATGGAATAAAGTTAATATCCTTCATGCCCGAAACTAAAGTAGAAGAGTAAATTAACCGGAGATATTATGTTTTTGAAATATTTTATTTTTTATATAAAATACATTATAAAAAACGTTGTATATAGTAGCGGAAAAGTTTTTCCGACAAATAGTATAAAAGACAAACA # Right flank : GTTAATGTAAGATGAGTCGCGCGGATTAAGGGAGAGTTCCCCACACATTTACTGTGATCTCACTTTAATAGGTGTTAGTACTATTGGTTTTCCTCTCAATGTCTTAACATAATATTAATAATTAAATGCAGTAGTTATTATCAAAATACTGTATTTTTCATATTATCTCAAGGGACATTCACCAATACAAATTTTAGTCAAACAATAATAAAGTATTTTTATGAAAAACAACTGTATAATAATAAATGAAAGAAAAGTATCCGGTTTCAGGATTTACAAGGGACAAAGAAGCCATTTATGTAAATGGAATCCGTATCTTTGTTCCTGTAGAATATGATAAGTTTAAGGCAGGAATTCCAAAAAAGAGACATAAAACTCTTTTTGAGCTATCAACAATCACTGGCATGAGGTATGCTGAAATTCAAAGGCTATACGATCATCCTGAATGGTACTCTGAGAGCAGGAACCAAATTCGTCTTAATGAAGATGCACAGAAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACAAGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-314 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZPK01000283.1 Methanosarcina sp. A14 contig_421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 51 37 100.0 36 ..................................... CCTGAAGGAGTCAAACCGAAAGCTGTACCCTCTGAG 124 37 100.0 37 ..................................... AAAATTAGAGGAGTCTGTTTTATAATGAATATCAGAT 198 37 100.0 43 ..................................... ACCAAAATTACCAAATAACACAAAAAAGTAATCGGGCGACAAA 278 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 4 37 100.0 39 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ACAAGGATTGAAACAATACTAATTTTTTCTGTCCGTTTGAGGCAGATACTA # Right flank : CTAAAAGAACCAAGGTGCTTCTCACTAAAGTCTCGAACTCGGTATTAATTCCCGGACACTAAAGTGTATATCATTTCTCTAGCCGCTAGCCGTTTGGCCCTCTGCTTTTTTCCTGCCTGTCCGGTGCTGGTTGAGGAGCCAAAGGTGCAGGTACAGGTGAAAATAGGTTTGCAGGTAGGCCCTTCCGCCTTAAACGAATAAGCCGGTAAGGGAAGTTTCTTTGCCTGACAATATTCCTGCAAGGCAAAAATAGGGTCTTTTGACATGTTAATCGTCACTTCTTCATTACTGGCCGGCAAATCTATTATCTTGGTCTTCAAGTCTGGAACTGGTAAGCCCAGGACAGCAGCTAGCAGGTCTACGGATGCCCGCTGAGTCGCTCCTTTCTTTGTCAAGTCCTCGTATACGGCAGACCGGTACTCTATATTATTTACTCTGATAGCGCTCTGGGCAGCGAATACCGGTAAGTTACCACGAATCGTGTTGGTCACTTTGTATAC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 3441-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZPK01000349.1 Methanosarcina sp. A14 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3440 37 100.0 35 ..................................... CAAATTTCCCACTTGAAATCGCTCTACTAAATGAG 3368 37 100.0 36 ..................................... ATAAAGGCTCTTATAGACTCTGGTAAAGACCACTTA 3295 37 100.0 36 ..................................... CCTGATTCGTAGGCATTACTGCCTGTATGATTTATT 3222 37 100.0 37 ..................................... AAATCTATTGGAGGCATATTAAGCCTCCGTTCCTGCT 3148 37 100.0 38 ..................................... TGGTTTTACATAGGTTTTCTTGGAATGTCATTTACTGT 3073 37 100.0 36 ..................................... CCGACATCGGCCATAGATACGCCTAACTGTTCCGCG 3000 37 97.3 33 ...............................A..... ATATTGTCGTTTTTAAGTCCGCATGGCGTATAA 2930 37 100.0 36 ..................................... TTATAAAGGGGTCTCTAACTCCGGAGTATGTGTTAC 2857 37 100.0 33 ..................................... ATATTGAAGCTTAGAACGGGTAGAATAAAAAGA 2787 37 100.0 36 ..................................... AAAATGTTCCACCCATCATCAATACTTTGCCACCAG 2714 37 100.0 35 ..................................... TTGTATGACTGGTGAGATGAGCAGAAAGAGTTATT 2642 37 100.0 36 ..................................... TAATTCAGGTCGATTTTCCAGCTAGGGTTGACGCTT 2569 37 100.0 36 ..................................... TTTCTCCGTCGTCTTCGGATGATATTGTATATGATA 2496 37 100.0 35 ..................................... TTTATTTCCCAGAGTGAACCGCCTTTAGGGTCTGC 2424 37 100.0 34 ..................................... ATCTAGTCATGGACCCAAAAAAAAGAGGGTTAGA 2353 37 100.0 34 ..................................... TTCTATCGACATTTAAGCGACCAATACCTTTTTT 2282 37 100.0 35 ..................................... AACTTTACAATATTCGTCAATCTTGTTTGTACAAG 2210 37 100.0 36 ..................................... TACCACTTGTTAAACCCCACACAACTACTCTAGGAT 2137 37 100.0 33 ..................................... ATTTCACCAGGATAATCCTGTCCTGCTATATAT 2067 37 100.0 32 ..................................... TATTCTTCTTCATTAAGTCCTAAACTTTTCAT 1998 37 100.0 36 ..................................... TCAATATCTGTACATGCATATTCAACTCCGTGTACA 1925 37 100.0 37 ..................................... ATATGTTCAATCCACTCAGCATAACGATCTAAAAAAT 1851 37 100.0 35 ..................................... TGATAATTCAACTGAAATTGTTCCAGCAGAGTCTG 1779 37 100.0 43 ..................................... TAGATGGATCTGCAATCCATGATTCGGTATAACCTAATACAAA 1699 37 100.0 34 ..................................... AGGATTGATATCTTAGAAGATAGATGCATTATTT 1628 37 100.0 36 ..................................... ATGAGTTTTTCTTCATTCAAAGCTTTGTTGTCGACC 1555 37 97.3 38 ...........................T......... ATCAAGCATATCCACCACTGAAAGGATTTAAAGTAACA 1480 37 100.0 37 ..................................... ATCATTATCTTCGTTTTTTGATTTTAATAAAAATCCA 1406 37 100.0 35 ..................................... TCTGTTAAAGATGTTCTTGATTTAGCAGTTGGTAG 1334 37 100.0 35 ..................................... ATAACTAATAATGAATTTCCTGGTATAATCCAAAC 1262 37 100.0 32 ..................................... CCATCACGTATACTCCATTGATTATTCCAGGT 1193 37 100.0 33 ..................................... ACAATAAATGGATTGACTAATATAAGTGATTAT 1123 37 100.0 36 ..................................... AATCACCTACTCGATACAATAATATTGTATTTTCGG 1050 37 100.0 35 ..................................... ACGGTTTGTTGTAACAAACTGATCATTAGATCAAA 978 37 100.0 35 ..................................... TGGACCATCGTATTCGAGAGATATCCAGCATATTT 906 37 100.0 36 ..................................... ATATCTCTGATTGATGAAATGCGTTCTGAATTGAAA 833 37 100.0 36 ..................................... TTTCTCCACAAAAATATTAAAGTAAAATATACAACA 760 37 100.0 36 ..................................... TTCTGATTACGTATCATAGTCTGAAGATTCGCTACA 687 37 100.0 35 ..................................... TTCAATTAAAAATATAGTTGGTGGTGTAATTGATT 615 37 100.0 36 ..................................... CTCTATGGGCGGCCTGTGCTGTGGACCCTGACTTTT 542 37 100.0 34 ..................................... GTGTTGTATTCTGCATTCATCGTTTTTGTGATGG 471 37 100.0 37 ..................................... AGCTGAAATTCGACAAAGAAACCCCACACATTGGCTC 397 37 100.0 37 ..................................... TGCACACCTCTTGTTAATTTCTGCAATAATTTTATCA 323 37 100.0 35 ..................................... TTATCATCATGATTTATCAATCATCAAACCAAGTT 251 37 100.0 34 ..................................... ATTCTCAGCCTAAACACTGTTTCCAGTTGGCCTG 180 37 100.0 36 ..................................... TTAGAAGTTGATGTGTCTGCCTCTATACTTGATAAT 107 37 100.0 35 ..................................... TATGAATTTATCCACGTTACACATACGATGTCTCT 35 35 94.6 0 ...................................-- | ========== ====== ====== ====== ===================================== =========================================== ================== 48 37 99.8 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GAGAGAGACGTATTCATTGCTTCAAAACAGCATCATATAAAGGGAATAGTAGATGAAGTACTTTTTCTTGAAGACGGGACTGCTGCTCCTCTTGAATATAAATTTGCTGAGTATAAAGACAAGATTTTTAAAACCTATAAGTTTCAGCTGGTTTTGCAGGCTCTTTTGATCCGGGAAAACTATAATATTGAAGTAAACCGTGCTTATATCTGTTTCACCAGAAGCAACAGTCTGGTTAAAGAAATGAAAATTACTACTTCTGATTTCAAAAAAGCTGAGAAAATTATTGGGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAAACTACCAAATCATCTAGAAAATGCGTAGATTGCTGTTACAGGAATATCTGCGTATGAAGAGATTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGGCTTTTCTAGCCAAATAACGGAAAATTTTGCCCT # Right flank : A # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //