Array 1 284485-285716 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJR01000002.1 Moraxella catarrhalis strain 5267783B NODE_2_length_347096_cov_52.724670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284485 28 100.0 32 ............................ GTTAACGCTCGGTTTGTCGTTGTTAAGCTTTG 284545 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 284606 28 100.0 32 ............................ AAAGCCATCTTGACCAATCACTGCGTACGCCC 284666 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 284727 28 100.0 32 ............................ TGTGGGCGATTATTAGCAAAAATTGGAAACTT 284787 28 100.0 32 ............................ AAAGCCTATAAGCCCAACGCCACCGTCATTTA 284847 28 100.0 32 ............................ TTTTGCCTGATGCGTGTTTTTTGCAATAAGCC 284907 28 100.0 33 ............................ GCGGTCGTGAAGGCCTGGACAGACTGGGTATCT 284968 28 96.4 32 ...............A............ TGCCACTGTGTACACAGCGTGGCAAGGGTATC 285028 28 100.0 32 ............................ ACCCCAAAATACATCTACACCGATGATAACAA 285088 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 285148 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 285208 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 285268 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 285328 28 100.0 33 ............................ AACATTCCATTCAAATTCAGCAGTGTAGACATT 285389 28 100.0 32 ............................ ACAGGCACTATGGGATTGACATTTGGTTTATT 285449 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 285509 28 100.0 32 ............................ TAAGAAAAAGCCCCTGTGTCAAACAGGGGTTT 285569 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 285629 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 285689 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAATATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //