Array 1 13227-11243 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRC01000019.1 Salmonella enterica subsp. enterica serovar Poona strain BCW_3986 NODE_19_length_74573_cov_2.6833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13226 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 13165 29 96.6 32 ................T............ GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 13104 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 13043 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 12982 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 12921 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 12860 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 12799 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 12738 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 12677 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 12616 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 12555 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 12494 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 12433 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 12371 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 12310 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 12249 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 12188 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 12127 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 12066 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 12005 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 11944 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 11883 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 11822 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 11761 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 11700 29 96.6 32 ..........................A.. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 11639 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 11578 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 11516 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 11455 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 11394 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 11333 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 11272 29 96.6 0 ............T................ | A [11245] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29704-29371 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRC01000019.1 Salmonella enterica subsp. enterica serovar Poona strain BCW_3986 NODE_19_length_74573_cov_2.6833, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29703 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 29642 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 29581 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 29520 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 29459 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 29398 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //