Array 1 20716-20223 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTQU01000039.1 Bacillus cereus strain AFS025120 AFS025120_109_B6_Contig39_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 20715 32 100.0 33 ................................ AAAGTTGTTGTATTGATCGTGAAAATATTTACA 20650 32 100.0 34 ................................ TAAAACAAATACACTATGGAAGAATCATGGTTAT 20584 32 100.0 35 ................................ TATTAGAAAACACGGAGCATACATGACACCGAACA 20517 32 100.0 34 ................................ TAAAAGTTATGAAAATCAACAAAAGAATTTAGAG 20451 32 100.0 33 ................................ GCCCGACTCACGAGGGGAACATCTGCCATAAGT 20386 32 100.0 34 ................................ ATTAATAAACTTTCCAAATCTCCAAATCTTTTTA 20320 32 100.0 33 ................................ CCGTTAACGAAAATATAAAAAGCATACGTGCCG 20255 32 75.0 0 ....T.T..C.......A.....AG...G.C. | A [20228] ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGTACAGCTAACAGTATTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGCCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCAGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTGAATTTTAAAATTTTTCATACAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : GGTAAGATGCTTGATAGTAATTTAGTGTCTCTGCTGGAATAAGAGGACCTGTTTCAATTCATACGGCAACAAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAATTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAATACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAAATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCATGACCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGAC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 29502-29074 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTQU01000039.1 Bacillus cereus strain AFS025120 AFS025120_109_B6_Contig39_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 29501 32 100.0 33 ................................ CTTAGAACCTATAAAAGAACAACCTTCTACCAA 29436 32 93.8 34 .........C...A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 29370 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 29302 32 96.9 34 .........C...................... CCCTGCTGATGCAACATCGCTACCTGCATTTTGT 29236 32 93.8 34 .........C..........A........... GAAAAAACGCTTGATGACTTAATGCGAGATGAAG 29170 32 93.8 33 ...........A...................C CATTGGTTTATCAGGAGTCATTGGCTTGTCATG 29105 32 96.9 0 ...........A.................... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TTGTAAAAGGAACTGTTAGCCATCAAGATGGAAGAAAAGCCAATAAATATACTAAATCAAGATATCCTTAATAATATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTAATAGGTAGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGGTATTATGAAGCTATACATTTTTGTTAATTAGTTAGTTAATAACTATGAAAATAAGGTCGAATATATTGATATAAAAGAATGAGTTGATTTAGAAAACCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAATACATTCGCACCTAGAATTCTCATGCTTTATGATGGGAATTTATGATTTCTTATACAAATCGGT # Right flank : TAGTAATGCTCTGGCTTTAAATCGCTCTGCAGATGTAGATACTCAACTGGAAGTATCTATATCTGTAGTATCTAACACACATGTTATAAACATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAATGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCTGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCTTA # Questionable array : NO Score: 8.38 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //