Array 1 187-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWV01000060.1 Yersinia kristensenii strain SCPM-O-B-3969 NODE_61_length_224_cov_12.0309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 186 28 100.0 32 ............................ CTGACGAGTACAAGCCTACAGTGCGTGCTGGA 126 28 100.0 32 ............................ ATACAGTTGAAACGGGTTCATTCAACTACAGT 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGAAAATACAGTTGAAACGGGTTCATTCAACTACAG # Right flank : ACTGACGAGTACAAGCCTACAGTGCGTGCTGGAGTTCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14008-12959 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWV01000020.1 Yersinia kristensenii strain SCPM-O-B-3969 NODE_20_length_98615_cov_8.82587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14007 28 100.0 32 ............................ GTGATGGTTATGAGCATGGCGAATGCAGCAAG 13947 28 100.0 32 ............................ AATTGGGAACGGGTAAGTACGGATAATATCTT 13887 28 100.0 32 ............................ TTTTTGGCGGCTGATTAAAACCATCGTCACAC 13827 28 100.0 32 ............................ GGTATCACCACCCCGGCAGAAACATGGCAAAT 13767 28 100.0 32 ............................ ACTTATCATAAAGAAGATATCAACACCCAGTC 13707 28 100.0 33 ............................ GATGCCAACTTGCTCAACAGTAAAGACATTACC 13646 28 100.0 32 ............................ ACTACACCTTCTGCCGCACCAGCACCACGATT 13586 28 100.0 32 ............................ TCACGTGAGTAATCTTCTTTGTGATGCTTAAT 13526 28 100.0 32 ............................ AAATGGATGCATCGGTATCAATTGAGACTCAG 13466 28 100.0 32 ............................ CTATTGAGCGCAAAGCATCTTCGGCGCTCATG 13406 28 100.0 32 ............................ ATAACAACTACTACCGGCCAATGCCATAGATA 13346 28 100.0 32 ............................ CACCACGGACTCACAGAAACGGATTTCACTAA 13286 28 100.0 32 ............................ GAGGGCGTGATTCGTTTTACTAAAGAAACTGC 13226 28 100.0 32 ............................ GTTCAACTGATGGGCATCTTAAGCGCAAGTCT 13166 28 100.0 32 ............................ GCTGCCCGGCTTGATAAACAACAATCGCCCGG 13106 28 100.0 32 ............................ ATTACTAGCAGCGCTGACTTTATTCAACTGCT 13046 28 100.0 32 ............................ CTGCGCCTTTATCTCGTTAAGCGCCTGAGTGG 12986 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATAATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : TCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATGTTTGATTTTATGTAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 24093-22505 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWV01000020.1 Yersinia kristensenii strain SCPM-O-B-3969 NODE_20_length_98615_cov_8.82587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24092 28 100.0 32 ............................ TCTGCCCCCGGCAAAGATGGGTCAAAGCCACT 24032 28 100.0 32 ............................ ATAATGTCATGACAGTGTTGGGGAGTGAGCCG 23972 28 100.0 32 ............................ AACTGATTAAGCGGCCAACTCAGCCAGCCATG 23912 28 100.0 32 ............................ ATTGCTCCGGGACAAGGGTCGCATTCTATGAA 23852 28 100.0 32 ............................ ACCTCCGAAGCTGTTAAGGCTTTATGCGTAGT 23792 28 100.0 32 ............................ TGCGTGGTGTGGCCGTAAATTCGCGATACATC 23732 28 100.0 32 ............................ ATTCAGTAGCCCACTCACCACAAATAGTATCG 23672 28 100.0 32 ............................ ACGGGCCACTGTCACGCAGTCATTCAGCGTCC 23612 28 100.0 32 ............................ TGATTGCTCACACACAGCATAAACAGAACTCG 23552 28 100.0 32 ............................ GAGGCGATTCAGGAAGCCCTCGGCCCCCGGAC 23492 28 100.0 32 ............................ TTGCCGGTGTGGCTGAACAAAGGCGAGCCAGT 23432 28 100.0 32 ............................ AATTAGCGCCGGACTTGGTTCAGCGGCTGTGG 23372 28 100.0 32 ............................ ATGATAATGACGGTTTAAATATAAAAACATGG 23312 28 100.0 32 ............................ ACTTTGGTGGCAGTGCGCCACGTAATCACCAC 23252 28 100.0 32 ............................ AGGAACCCGCCGAAGTCTAAAACCGCGGATTT 23192 28 100.0 32 ............................ TAGCCGAAGCCGGTTACATCAAGGTTGGCGAG 23132 28 100.0 32 ............................ ATTTGAAAAGGCCATTCCACGTACCCGAGTAT 23072 28 100.0 32 ............................ TCCTGAAGTTTTTTAAACTCACGAAATTTCGC 23012 28 100.0 32 ............................ GCGCAAGTTGACCCAGTTCAGGCGCTGGCAAA 22952 28 100.0 32 ............................ CAAGATGGAGGTGGTGGTATCACGCAATAGCT 22892 28 100.0 32 ............................ AAGAAATCCCCGGATGAATTCAACAACCTGTA 22832 28 100.0 32 ............................ CCAAAGATTAACTACATCCACAATGTATAAAT 22772 28 100.0 32 ............................ TCAAACAGTTCAATGGAGCGCGGCATCCATAA 22712 28 100.0 32 ............................ ATACAGTTGAAACGGGTTCATTCAACTACAGT 22652 28 100.0 32 ............................ CTGACGAGTACAAGCCTACAGTGCGTGCTGGA 22592 28 100.0 32 ............................ ACCAATGCGGGCAAGTTATTCGGCGAGGGGCT 22532 28 78.6 0 .....................AGCATC. | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATTCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATTATCCTCAGCAGAAAAGGCTTCATGACATTTTGCCTTAATCTCAACTTGAACCCTTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTTTTAAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTGGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 25621-25473 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWV01000020.1 Yersinia kristensenii strain SCPM-O-B-3969 NODE_20_length_98615_cov_8.82587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25620 28 100.0 32 ............................ ACGCTCCACCGGGTAAGGCTGTGAATTATGGT 25560 28 100.0 32 ............................ CCAAAATGATTCCCACCGGCCGTGACAGTCTG 25500 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCAGAGAAGATCCATGGATGGCGACGGAGCAAGGATTTTTCACGTCCTTTAGCAAGAAATAGGCGCATTGTAAGAGTCTTATTAAATCAAATAGTTGAAATTGATAAGTCATTATCAATCAAAATAAGGTGCTAATGATATAGCAATATCATGTCACTCACTACCACAGCGGCCTTGATATCTGGTGGCAATATCGCGTTGAACAGCGCGACTAAAAACTTTTTCACTACTATATTCATAGAGCTATAATAACTTTCTTTCTTCAAAGTAGGGACCGCATCATGACGAATAAGCAAACTGACTTAGCACTCACAGAAAAACAAAAAGAAGAAATTGACGAAATTGCGCTACAACGCGTTCAGGCAATGAACAGCGATGAGTTTCTGTGTAATAGCATTGACCAAAAAATTCACTCGATGGAAGAACAAGTTAAGTCCTATTTCCAATCGCGTTTTTCGTTCCACTTGAACCAAAAAAACCGCGATCAATAAAGGCTCTTT # Right flank : ACATTTCACGATTATTGGTGAAAACGGGACAATTCGATTGGAAATATGAGGTTAATGAGGGGGAGGGTATGGCAAAAATATGCACCGCTGCGTATGTCTATGGTGTAGTTCAAGGTGTAGGGTTTCGCTATAGCACGCAACGGCAAGCACTGGCGTTGGGGGTGACCGGTTATGCCCGCAATTGTGACGACGGCAGTGTAGAAGTGGTGGCTTATGGTGAACAACAGGCGGTCGAGCAACTGATGGAGTGGATCAAACAGGGCGGGCCACGGGGCGCACGAGTTGATCGCCTGCTGACAGAACCTCATCCCGCCACACCATTTGAGACATTTAACATTCGTTATTAGCCGACTCACCCAGAATGTGGCCGTTGGTTAAATACATTTCACCGGTTTTGGCAGCCCGGCAATTTTTGTCGCTTGCTTTGCAGGCCCCTTGGGGAATAAACGATAGAGATAGCGGCTATTACCTTTTTCTTCACCGTATTTCTGCGCCATGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //