Array 1 1-210 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXS01000207.1 Rhodanobacter sp. 115 contig207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 1 27 96.4 32 -........................... ATGGGGTAGGCCTGCACCTTCGGGGTGACCAC 60 28 100.0 31 ............................ ATGCCTGCACGGTCGCCAATGGCATCTCGTC 119 28 100.0 36 ............................ AAGTTCCTCACCCAGGCGCACCACGCGGGCGGTGAG 183 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 4 28 99.1 33 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : | # Right flank : | # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 331-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXS01000272.1 Rhodanobacter sp. 115 contig272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 330 28 100.0 33 ............................ GTGCTTGAGCCGGAGCTGTTCGAACAGACCTAG 269 28 100.0 34 ............................ TCCGACGATGAAGGCGATACGCCGGCAAAGCTTC 207 28 100.0 32 ............................ TGTCCCGAACGTCACCGCGACAATCGGCTTCC 147 28 100.0 32 ............................ TATCGCTACTACAGCGCCGGGCATCACCACAT 87 28 100.0 32 ............................ ACGGCCGGCGCCGCGCAGCTGGTCTACAAGGC 27 27 96.4 0 ...........................- | ========== ====== ====== ====== ============================ ================================== ================== 6 28 99.4 33 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18948-21618 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXS01000386.1 Rhodanobacter sp. 115 contig386, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18948 28 100.0 32 ............................ GCACGGCTCGATCTGATTGACCTGCCCGACAT 19008 28 100.0 32 ............................ GTACACTTCACGCGTGCTTAGCCTGCCGTACA 19068 28 100.0 32 ............................ GGCAAGACGACGACAAAATATCAACGCTCCAC 19128 28 100.0 32 ............................ GCCGCCACCGCCAGCGCCACGGATCGTCATTG 19188 28 100.0 32 ............................ ATGACTCACCGCAAACTGAAACCGTGGGAAGT 19248 28 100.0 32 ............................ ATTCCGATACCCGCGACGATCAAGCCTTCACC 19308 28 100.0 32 ............................ TCTCCGATATGCCCGGTAGATGGATCAAGCAG 19368 28 100.0 32 ............................ CTGTTAGGTGGACCGATCATACATCCATCATG 19428 28 100.0 32 ............................ TGCGACAGTTGCGGAAAGCCCACGGTGACGCG 19488 28 100.0 32 ............................ AGGTAGGCAGCCGTGCGCATATGTATGGCGGC 19548 28 100.0 32 ............................ TCGAAGTCGCGATAGACCTGGTCGCCGACCCT 19608 28 100.0 32 ............................ TGCAACGACTCTTCCGGCCTACATCTTCAATC 19668 28 100.0 32 ............................ TCATGCCCGCCACCCGCTAAGAACTCCAACGC 19728 28 100.0 32 ............................ CGAGAGAGAACGGTTCGGCTCGGCGAAGCTCA 19788 28 100.0 32 ............................ AGTGGGCATGTCGGCTCCTTAAAGTACGTCTG 19848 28 100.0 32 ............................ GCCCGGTAACGTAGCATCACCGAACTGGTATT 19908 28 100.0 32 ............................ ATCACGAACTTGGCGTTAGTTCGCACCAGGTC 19968 28 100.0 33 ............................ TCGCGCAACTCGTCGAGGTTTGGGACGCAATGT 20029 28 100.0 32 ............................ ACAAACCCGAAGTAAACCGTCAAAGGCGAAGA 20089 28 100.0 32 ............................ CTGAGTCGGGTCAGCCCCCGGCTCGCCGTCAA 20149 28 100.0 32 ............................ GACAAGATCCTGATAATTCAGGCATAGCGACG 20209 28 100.0 32 ............................ GCGATCCAGACCGAGCAAACAGCGCGCGTTGC 20269 28 100.0 32 ............................ GTAACGACGAAGGCCGGCATCATGCTGCGTAT 20329 28 100.0 32 ............................ ATTACGCAAGAAATCACCGACCGAACGAATGC 20389 28 100.0 32 ............................ CATGGCAGACGGCGCCTCGGTGGGCGCGGTGG 20449 28 100.0 32 ............................ CTGCCGCTTGCCGGCGCGCGCTACGTCCTGCA 20509 28 100.0 32 ............................ ACCACCGCTGCCGTCACCGTCACCGACTACAC 20569 28 100.0 32 ............................ TTGTCCGTGGATACGACCGTTTGCGATGCACC 20629 28 100.0 32 ............................ TGTGGCCGCTGCGTTGGCCGTGGCCTGCACGA 20689 28 100.0 32 ............................ TACGGCATGCCCCGCCGGAACAAGTCCATGGC 20749 28 100.0 32 ............................ TCTTGCGTGATCGCATCGGCATTTGCCGTGTC 20809 28 100.0 32 ............................ TATACCTATTCGGCATCTCCGGGGCCGTATGC 20869 28 96.4 33 .....................A...... TTGGAGATCAATCAGATGTTGAGTGGCTTCTAC G,TG [20875,20892] 20933 28 100.0 32 ............................ ACAAACCCGAAGTAAACCGTCAAAGGCGAAGA 20993 28 100.0 32 ............................ ACCACCGCTGCCGTCACCGTCACCGACTACAC 21053 28 100.0 32 ............................ AGTACCCGGAGGCGTCACTGAACCCCAACCCA 21113 28 100.0 32 ............................ ATTCCCCCCAGCCGTGATTTTCGCAGCAGCGA 21173 28 100.0 32 ............................ AAGCCCGCTATCTACTGCATCGCGGTGGCTGA 21233 28 100.0 32 ............................ AAGTGAACATGCAAATCAACCAACCGCCGGAT 21293 28 100.0 32 ............................ ATCCCTCACTGTCGGTGTCGAAGTACCAAATG 21353 28 100.0 32 ............................ TGTCCCGAACGTCACCGCGACAATCGGCTTCC 21413 28 100.0 32 ............................ CGTCGAACAATCGCTATTTTGAGCGAGGTTCG 21473 28 100.0 32 ............................ ATATCGCGATCGCGTAGCTCCATGCCGCGCGC 21533 28 100.0 32 ............................ TCCGCGCCGTCATGGGTGCCGTGACTGAAGCC 21593 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.8 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : CCTCGCTACGGCAGCTGTTTGCCGCCGACTGGCTCAAAGGCATGCGCGATCACGTGCGCATGACCGACATCGCACCAGCACCAGCGGACGCCCCGCATCGAACCGTGCAACGCAAACAGTTCAAGACCAACGTCGAACGGCTGCGACGCCGACGCATGAAGCGCAAGGGTGAAACGGTGGAACAGGCCCAGGAAGCCATTCCCTACAGCGTCGAACGCACTCCGAGCCTGCCCTACCTGCACATTCGAAGCCGTAGCACGGCACAGCCGTTCTGCCTGTTCATCGCAGTTGGCGCGCTCGGTCCAAGTGCGGTGCCAGGTAACTTCAACAGCTACGGACTGGGCGGTCCCGCGACGATCCCCTGGTTCTGACCCTTTTTCCGAGTCGCCAAGCCGCTCTTTGAAAATCAACACCTTGCGCTTGTCCCGTTAAAAAGGGGCAAGCGCTTCTTTTTGTGCCTTGAGCCATAATCCTCAATGACTTGAAGCCAGAAGCGTCTT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17176-14500 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXS01000137.1 Rhodanobacter sp. 115 contig137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 17175 27 96.4 32 -........................... TCCGCGCCGTCATGGGTGCCGTGACTGAAGCC 17116 28 100.0 32 ............................ TCCGACGATGAAGGCGATACGCCGGCAAAGCT 17056 28 100.0 33 ............................ GTGCTTGAGCCGGAGCTGTTCGAACAGACCTAC 16995 28 100.0 32 ............................ TATCGCTACTACAGCGCCGGGCATCACCACAT 16935 28 100.0 32 ............................ ACGGCCGGCGCCGCGCAGCTGGTCTACAAGGC 16875 28 100.0 32 ............................ ACTCCGCCACGCTGGCGAAGATCCATGAGCAT 16815 28 100.0 32 ............................ TCGCCGATGGCGAAGAAACGGTCAGCTACTTT 16755 28 100.0 32 ............................ TCGTCGTTGAACACGGCCTCGATCGTGCACAG 16695 28 100.0 32 ............................ GCCCCGGCCGGAGCGGTGACCATCGGCTACAG 16635 28 100.0 32 ............................ CTGTCAAGCGGTGCGCGAAAAGCCAGCACCAC 16575 28 100.0 32 ............................ ATGCTCATCAAGCATCTCGATCGACGTGTAGC 16515 28 100.0 32 ............................ TCATGGATGCGTTCATGCATCCGCGGTCTCAT 16455 28 100.0 32 ............................ TTCGCGCGCAGATCGTGGAAGGTGAAGCGTTG 16395 28 100.0 32 ............................ AGGTAGCCCACCGCATCCTCGCTGGCTTCCTT 16335 28 100.0 32 ............................ GCGTCGACGTGGGTCGCATCGAAGCCCTCACT 16275 28 100.0 32 ............................ ACCGGCTATGCCGGCATCGGCGTGTATCTGGA 16215 28 100.0 32 ............................ GACGTAAAGCGTAGGAAAGTTCATGGCGACCT 16155 28 100.0 32 ............................ GAGCCGTGCGCGCGATTCCGCCTTGGCCTTCG 16095 28 100.0 32 ............................ ACAAGGAAGAGGACTGGTTCGCTGCGGACCTG 16035 28 100.0 32 ............................ TGGCGGTGAACAAGGACACCGACGCCCTGCAC 15975 28 100.0 32 ............................ CTTCCGAAAACCATCACGAGCCCGACGGTCGC 15915 28 100.0 34 ............................ ATCACGGCAATGGGGCTCTCGGCCTGCCATGGCG 15853 28 96.4 32 A........................... GCGTACTCGCCTGTCGTGAGGTAGGCCATCAC C,G [15838,15850] 15791 28 100.0 32 ............................ GAACCGGCGCGGCTTCCTCGAGCGCGTAGCCT 15731 28 100.0 32 ............................ AGCGTGCCATCGGTGGAGTGCGCATCGAACAC 15671 28 100.0 32 ............................ ACGACGCCAGCACGCTGTCGATGGTCTTGCCG 15611 28 100.0 33 ............................ GACTTGCGTGTAGACGGTGCCGTGCACCTCAAT 15550 28 100.0 32 ............................ TTTTCGCGCATAGCCGCAGACGCGGCAAGCAC 15490 28 100.0 33 ............................ ATCACGAACACCGATGGCCGTGGATCCCCCGCT 15429 28 96.4 32 .....................C...... ACCGGACTTCACGCTATCCGGCAGCAAGCTCA GTA [15405] 15366 28 100.0 32 ............................ ACGCTGAAGGTCGGCAAGTCGTCTCGCGTGGA 15306 28 100.0 32 ............................ AGGTTATCCAGCCGTGGCAGTTCGGCCACGGT 15246 28 100.0 32 ............................ GCCCGCGCGTCTACGGTCATCGTTCGCGATGC 15186 28 100.0 32 ............................ ATCGTCGGCGCCTACGAGGCCGCCGCCAAAAA 15126 28 100.0 32 ............................ AATGCCTGCACGGTCGCCAATGGCATCTCGTC 15066 28 100.0 32 ............................ ATGGGGTAGGCCTGCACCTTCGGGGTGACCAC 15006 28 100.0 32 ............................ TTCTCACCCAGGCGCACCACGCGGGCGGTGAG 14946 28 100.0 32 ............................ GTGGGCAGCACGTGGTACTGGCCGCCGGCGAT 14886 28 100.0 31 ............................ CGGTACCCATCGCGCCGCCCAGGATCGGCCC 14827 28 100.0 32 ............................ ATATGGCGGATGTCGATGATCACCTCGCGCAG 14767 28 100.0 32 ............................ GCGAAGAACCTCGGCGAAGACGACAAGGCGCA 14707 28 100.0 32 ............................ TGTGCAGTACGCGATCGAGCGTCTTGCTGCAT 14647 28 100.0 32 ............................ AAGCGAGAAGCGGCACGAGGACAAGCATCACC 14587 28 100.0 32 ............................ ATCTTCAAGGCCGCTTAAATGAACGACAAACA 14527 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 45 28 99.8 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : | # Right flank : CTGGTGCTGATCGCCATCGCGCTGATGTTTGGGTTCGCCGTAAGCAGCACGTCGCCGAAGGATGGCAAGCTGAAGAGGCAGCCATGGCCGCACCCCTGTCGGCTGGAAAAGCGCCCTCGGCGGCACGCCGAACAAGAGGGTTGGCGGTGCCACGCATAGTCGATACTCTCAGCTCTTTCCGCACACCGAACTGATCGGCCTTGTCTGCCATGAACGCAATCATTCCGTCGTCGAACGGCGCCATACCGAATTTCGCAACGCTCGATCCCGCGCAACTGCTGGATCGACTGGCCACCGAGGAGGATCGCGCGCCACTCGACCTGATCGATGCCTGCGTGGCCCATGGCGAAGCGATGGTGGAAACCTTGCGCCCTGTTCTGGACGACGAACGCACATGGCGTGGCGCAGCGCCGGGCGTGTGGTGGCTTCCACTGCATGCGGCCTTCATTCTCGGCCGCATTCCGACTGAGTCGGCCGGCTTGCTGCTGGTGCATTTGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 274-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXS01000460.1 Rhodanobacter sp. 115 contig460, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 273 28 100.0 35 ............................ TACGGCATGCCCCGCCGGAACAAGTCCATGGCGTG 210 28 100.0 33 ............................ TTGTCCGTGGATACGACCGTTTGCGATGCACTC 149 28 100.0 33 ............................ TGTCCCGAACGTCACCGCGACAATCGGCTTCTC 88 28 100.0 32 ............................ TGTGGCCGCTGCGTTGGCCGTGGCCTGCACGA 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 5 28 100.0 34 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //