Array 1 27833-28134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPI010000016.1 Ruminococcus sp. MSJ-25 M-25_ctg0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27833 36 100.0 29 .................................... CCCTGTATGTAACTCGAATCATTCTTTAC 27898 36 97.2 30 ..........G......................... TCATCATGCCTTTTTTGAATCTTGTCCATT 27964 36 94.4 31 ..........G....A.................... ACACCCATGACAACTATTTCGGCTAGCTTGT 28031 36 100.0 30 .................................... TGCCCTCGACCGACACGGGACGTGCGTTCG 28097 35 86.1 0 ..........G....A............G.-....T | ACT [28124] ========== ====== ====== ====== ==================================== =============================== ================== 5 36 95.5 30 CTACTACACTAGTGCGAATTTGCACTAGTCTAAAAC # Left flank : CAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGTGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGAGAAAAAAGATACTTACAACTATCCTTTTATCGGCACTTAACTGTGCGATAGCAGTTGTTAAGGAAATTGAGAGCTGTGACGAGATCACAATAGACTAGGGGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGTGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGCTTTATGTAAAACAGCCACTTTCTATTGACATTTGTGTCTGGAAATGGTATAATATACACATTAAAGCAAAGCGTCGATAAAATAAGTTTGGTGTTTTATTACAGAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : TTTAACATCAAAACCAACAAATAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTAATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGTAGAGGTCATTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTCAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAAGATGGATAATAATAACTACAACAAAACTCAGCTTTCCTCTGAGAGCAGCAGCAATATCAAGCTTTGTGGTGTAACCAAAGTAAACATCACTTTTTCAAGCAAGCATGGCTTTGAGAGCGGAGTGGAGATAAATACTTCAAACCCTACTCACAGAA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTAGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 86857-83129 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPI010000006.1 Ruminococcus sp. MSJ-25 M-25_ctg0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 86856 32 100.0 33 ................................ GACCTGTTCGTAGCCGTATGATACCTTTGTTTC 86791 32 100.0 34 ................................ TTCTGTTGCTATTGTAGTTATATCATCTGCATAT 86725 32 100.0 33 ................................ TGCGACCTTAGCAGCATTATCTGCCACTGTAGC 86660 32 100.0 33 ................................ TCTGAGCCTCATACATTCTGTGCTGACACGTCC 86595 32 100.0 33 ................................ TATCACGGCGCTGACCTTAACAGGTTTGAAGAT 86530 32 100.0 35 ................................ TTTTTTTGATTTTAAAATGGCGGTAAATCTTCGTC 86463 32 100.0 32 ................................ TTATTTTCAAATTCCGCATAAGGTCTGATGAA 86399 32 100.0 36 ................................ GTAGCCTGCGTTCTGGGCGTCCTGCTGGGTCATCGG 86331 32 100.0 35 ................................ GCCGTCACGTTTTGCATTGTCGCCGTCAAGTTTGA 86264 32 100.0 34 ................................ GGCGTTCTGAGACCGAAAAATCAGAACGCTATCA 86198 32 100.0 36 ................................ GCCTATCGTGTTCGGTGCAAGGGGTGGCGTGCCAAG 86130 32 100.0 35 ................................ CGTCAAAGTCTATGACGTTGCTTTCAGCTTCTGCC 86063 32 100.0 35 ................................ CCTGCGGAACATCGAGGTTGAAGCAGGCGGTAGCG 85996 32 100.0 33 ................................ ACATCTTTTATCGAAACTGTCCGAAACGCATTT 85931 32 100.0 34 ................................ GACAAGTTTTGCCACTGAAAGCGTCGCAAGACCA 85865 32 100.0 36 ................................ TTCAATTTGCAGACGTTTGTCAATCAATATCAGCGC 85797 32 100.0 34 ................................ TTTATGTACTGTCCGAAAAATCGGACTGAAATAA 85731 32 100.0 35 ................................ AATAGCATTTGTCAAGCGATTTGTTGAAAAAATTC 85664 32 100.0 34 ................................ GAAGTGTTCTGACAGCATGAACGAACAAGGTCTG 85598 32 100.0 35 ................................ TGCGGTTTCAGCACGTTCAGCCGCCTGTTCTGCGG 85531 32 100.0 34 ................................ GACGATATGGTCGTCATGGCATTAACGGAACTTA 85465 32 100.0 34 ................................ TAGCGGTATATGGACTATATCGAAATGTTAAAGA 85399 32 100.0 34 ................................ AGAGACGAAATGGAAGAGCTTGTTGGCGAAGCAA 85333 32 100.0 33 ................................ CAAAGATTTGCGAGAGTGCAATCAACGTATCGT 85268 32 100.0 34 ................................ GACAATCCTGAACAATCGGAGTTGACATTTGGTG 85202 32 100.0 34 ................................ CGTCCTGACATTTTATCAGCCATTCCGCCGCCGC 85136 32 100.0 34 ................................ TTCCCAAAATAATCGGTGCTATCATAGACGGCTT 85070 32 100.0 34 ................................ TTCGTATATCGGCATACACGCCGCCGATAGTTCG 85004 32 100.0 34 ................................ CCACGTCCAGCAGAATCAGCAACAGTGGGAAAAT 84938 32 100.0 35 ................................ CGTGAGAAAGGGATTGAACCTGTTAAGAAGATGGA 84871 32 100.0 36 ................................ TTCATGCATATACTCTTCAAAAATTTCATCCGTGAA 84803 32 100.0 34 ................................ GAAAGACCAAAATACCTCATATTTGCAGATCATA 84737 32 100.0 35 ................................ CAAGTGTGCAGATACCGTTGAATTTGGATTTTGTG 84670 32 100.0 33 ................................ TGCAAAGATTTCTTCGGGGTTCGCCCCGATTAT 84605 32 100.0 33 ................................ TCACAGTCGATATGTAGATTGGCATTTGAATTT 84540 32 100.0 34 ................................ AATTAAAAAAAGGGGGCAAATTTATGGCAAACAT 84474 32 100.0 35 ................................ GTTACCCAGGTAACAAAGAAACCATGCAGTCAATA 84407 32 100.0 34 ................................ TGCTGAGGTCAACGTCCAAGGCCGTCATGAGGTT 84341 32 100.0 32 ................................ ATCAATCGGAATATCTTTCAACCTGTCAACAT 84277 32 100.0 35 ................................ GTTTCTTCGGTGACTTCGTGTCCTTTGTGAATCTC 84210 32 100.0 33 ................................ AATTAGATGTTTTATTGCTGTCCTTACGCTTTT 84145 32 100.0 33 ................................ TTTCTGCTCGTCGTCAAATTCCAGTGGATAGTT 84080 32 100.0 35 ................................ ACAGTAGTCTTTGCCCTCATAGCAGAAAACATTTT 84013 32 100.0 33 ................................ TATACCCTAAAACGCTAAAATATGCGTAAAAAT 83948 32 100.0 34 ................................ CGCAAAGATTTCTTCGGGGTTCGCCCCGATTATC 83882 32 100.0 35 ................................ TGCAGACGTGACCGCCACATATGACGGTGTGACAT 83815 32 100.0 34 ................................ CGCCTGTGGCAATCGCAACGTGACCGATGCCACC 83749 32 100.0 33 ................................ CCTTGTCCTCCTCGATTAGCGTGTCGGTCATTA 83684 32 100.0 34 ................................ TCGTCTCCAGTGTGGGTGGATTGATAACGGACTG 83618 32 100.0 34 ................................ TGGCGTGTCCCTCGATTATCTTTGCGGAAACGAG 83552 32 100.0 35 ................................ CAAATTCTTCCACGCTCGCAGGCTCGTTGCCCGAA 83485 32 100.0 33 ................................ GATGTTGCAAAGAGCAGCGATTACAGCAACCTT 83420 32 100.0 34 ................................ TGATTTTGTGCAAGTATACAAAAGTACGTCATTG 83354 32 100.0 33 ................................ CTTTTGACGGCACTGGTATGCGATAACTGTCGC 83289 32 100.0 33 ................................ ATCGACCTTACAGACTGGTTTTCACGCAAGTGG 83224 32 100.0 33 ................................ TTCAAAAATGGCAGGCGAAAGGACGTACAAACA 83159 31 90.6 0 ..........................C-..T. | ========== ====== ====== ====== ================================ ==================================== ================== 57 32 99.8 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : TGTCTTGTAACCTCCAAAGCCTTGCAGTAAAAACTGATCCTTCCTGTGATCCTACCGTCATCAGTCTTTTTGGAAATGAACTTTAACCGTTCTTCTTTCCTGACTTCCGACGGTTCGCGGCGAAAAAAGCAGATGCTTCCTCCAGAAATTCATTAAGCTCTTCAAGCTCTCGGTTTTTCTTTTCAAGTTCTTTTATCCGTTTGTTCGCTGCCTGGAGCTGCTGTGCGATAGTAAGTGACTCTCCCGGTGTACGTGAGCCTGCACCTGTGTCTATTTCTCCGATCCGTGCCTTTTGCACCCACGTCCCAAGCGTCCCTTTGGGGATGCACAGTTCATCTGCTGCTGCCTTGGTGCCAACCTCCTTTGCGAGCTTTATTGCCTGCTTTTTAAACTCTTCATCATATTGTTTTCCTGTTCCCATTGATGACACACTCCTTTGTTTTTATTATACTTTGATTGTTTTGTATGTGTCAAGTTTTATTATACAGGATTATATCAGC # Right flank : TTCGTTTCAACGCAGGACTTAGGGTGTACGTTATCCGCTCAGACCACAGCAAGTGCTGTGCGTGGTGTTCAAAGCTTGCAGGAAAGTACGTTTATCCCGATGTTCCCAAGTGCATTTTCTTCTGAAGAGGAATTAGTAAAAACCATATTGCATGAAAAGTGCCACGTTTTACAGCTAAAGAAACATGGCAAAGCATATGCTCAGCAAAACTTAGATTTAATGGAAAAACAAGCTTATAGGTTTGAACGATTATTTTATAGCTTGGTTACAAAGAGGTGATAGTATGAAATGGCTTGACAATCTAGCGAGTATAAAGCAGCTCCATAAGGCAGGCAAATGCCCATATTGCGGACAAGAAAATACAGATTACAGATTGCTTGAAATAAGCAGTGGTAAAGGATATGGAGATGTTTGGTGCAATGACTGTAAAAAAGCTTTTCATATTTCTCGTATAGAAGTATCAGAGACAGACATTCGAGAAAAGCAGTTACCTCCTGAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 123898-129661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPI010000012.1 Ruminococcus sp. MSJ-25 M-25_ctg0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 123898 32 100.0 36 ................................ AACGCTGAAATGTACACCTTTAATCAGCTTGCAACT 123966 32 100.0 33 ................................ TTGGCTATTTGTGGCAGGAAGAGTTGTTTTCAC 124031 32 100.0 34 ................................ TTCCATGTGTATATAGGTATTTTCCGCCACTTCG 124097 32 100.0 34 ................................ AAACTGATAGCGTGTTTACTTTGTGCATTTATCG 124163 32 100.0 35 ................................ GACGTTCGGATTGATGTAGGTGTTGTGCCAAAATA 124230 32 100.0 33 ................................ TCGGATATTTTGCCATTAAATACCACGCCTAAT 124295 32 100.0 34 ................................ TCAACGTCCGCTGAAATTATATGATAATATCTAT 124361 32 100.0 36 ................................ TTGACAATGAAGTTATTGAAAACGGCAATATCACAC 124429 32 100.0 34 ................................ CGTCGGTTGCAACGTGGCAACCGCAACGTTGTTA 124495 32 100.0 34 ................................ ACATTGTCAAATGATATGCTTAAAACACGAACTG 124561 32 100.0 33 ................................ GATATACTCTTTGATTTTGCCGATTGCATATCT 124626 32 100.0 35 ................................ CTTTCATCGTCAGCTATGTGGCACTTGGCACTCGG 124693 32 100.0 35 ................................ TTTGTGCGAAGCAAAGTGATGTCGCAAAGATCAAA 124760 32 100.0 34 ................................ CGTCCTGACATTTTATCAGCCATTCCGCCGCCGC 124826 32 100.0 33 ................................ GTTTGAGCCGTTTGACATTGGCAACAGCCAGCT 124891 32 100.0 32 ................................ TTTCTGCATGGCATAAAAATAGTGCCACACAA 124955 32 100.0 33 ................................ TGCAAGTCTTAAAGATTTGTCAATATGGGTGAA 125020 32 100.0 34 ................................ TAAAGATTTTGAAGAATTTTATTCTTATGAGCAT 125086 32 100.0 33 ................................ TTTTTCATTGCCACGTTCTACCGATTTTACTAA 125151 32 100.0 33 ................................ AAACTGATAGCGTGTTTACTTTGTGCATTTATC 125216 32 100.0 34 ................................ GCGGAAAGAACAGGTGTTAGCAAATCCGCCTTGT 125282 32 100.0 34 ................................ TGATAATCGGCGAAGGTTGGGTAATGGCTGAAAG 125348 32 100.0 34 ................................ CTCGGTGTTGAGATACCACAAGCAAAAGAAATCT 125414 32 100.0 34 ................................ AGTTATACGATATCAGCTCCGTTTGCGAGGAATA 125480 32 100.0 33 ................................ GTTTTTCCAGCTGTTGCACCCTGTATTCCGTCA 125545 32 100.0 34 ................................ GCAGATTTGGTTGTAATTCACAAATAAATTCCTG 125611 32 100.0 34 ................................ GTTAACATATCTGCAATGCAAGCTGAGGTCAAGA 125677 32 100.0 34 ................................ GCATATATTAGACGATATGATGAGGAAATTATGC 125743 32 100.0 35 ................................ GCATATATTAGACGATATGATGAGGAAATTATGCC 125810 32 100.0 33 ................................ TGGATGCAAAGGACGAAGAGGAAGAGGAAAAGG 125875 32 100.0 35 ................................ AAACTGATAGCGTGTTTACTTTGTGCATTTATCCA 125942 32 100.0 33 ................................ GCAGGAAATAATCGGCGAAAGTGCTGTAACAAC 126007 32 100.0 34 ................................ GCTATCTTCAATTATTCGTGATAGGGATGACACT 126073 32 100.0 33 ................................ TTTAGGAGGGATAAAAGTGACAAAAGCTGAAAA 126138 32 100.0 34 ................................ TTGTGCAAGCTTGAACATATCTTCTTTGCTTAAC 126204 32 100.0 33 ................................ GTCAACTTCGGTGAGGAAACCAACACGGACGTG 126269 32 100.0 33 ................................ GATAAGGCGGACGATTTCCACGTCCAATTCTTC 126334 32 100.0 35 ................................ GATTCTCGCACAAAACTCGTTGAGAAGTGGCACTC 126401 32 100.0 34 ................................ TGTTCCCTGGCATCGTCGTCAAAATACATAATGA 126467 32 100.0 33 ................................ TGATAGTGATATTATTGCGTGCAATATTGTACA 126532 32 100.0 34 ................................ AAAGAGGACGATTACAAGGGATTTATCGACAGCA 126598 32 100.0 33 ................................ TGAGGAAATAACATCTCAGTTATACGATATCAG 126663 32 100.0 33 ................................ TGCGACTGTGGTAATTGCTCTCAAACAGCTGTT 126728 32 100.0 33 ................................ TACAGCCTTGTTGTTTGCATCTACCTCAACGAC 126793 32 100.0 33 ................................ CCCAATATGCGCCGCACGCAGAGCCGAAGATGG 126858 32 100.0 34 ................................ GCAACGGGTGAGAAAAGAAACTGCCCGCCTGATA 126924 32 100.0 33 ................................ ATCCGCCGTGTACATATCTTAGCAACGCAGGGG 126989 32 100.0 33 ................................ GCCTATAGGCGTGTTTTCTATCAGACCCATATT 127054 32 100.0 35 ................................ GACAAAAGCCGTTGAGCAAATGAAAGCATATAAAG 127121 32 100.0 33 ................................ AGCAAACAACAAGTCATCGTTCGTTGTCTACGA 127186 32 100.0 34 ................................ GCGTTTATAGTCATTACTGTAGATAACAAACGTG 127252 32 100.0 33 ................................ TGTTTGTGCAAATGTGTGCAATATCTTTTGATT 127317 32 100.0 34 ................................ ATATGGCCTTGAACGCCGTATGCTGTTCGTTAAA 127383 32 100.0 34 ................................ TCGCTTAATCCGACACGTTATCCGTCACGACCCG 127449 32 100.0 34 ................................ CAAAAGTTCAGGATTGTCATAAACGTTGCCGACG 127515 32 100.0 35 ................................ GCAGATAACGAGAGGGAGGTTGCTTGACGTGCGAT 127582 32 100.0 35 ................................ TTTTGTACAGACGTGCTGCCCCTGCGTTGCTAAGA 127649 32 100.0 35 ................................ GCAGGTAACAGTTTTGCAAATCAGACCTTGTTCGT 127716 32 100.0 34 ................................ TTGATAGCCTGAAAAGGTCAGCCCAGGGCGTGTT 127782 32 100.0 33 ................................ TGGCACAAAATCCAAATTCAACGGTATCTGCAC 127847 32 100.0 35 ................................ ATTTTTACGCCTGAGTGGCTAGCCCTCAGGCAATG 127914 32 100.0 35 ................................ TGTACTTGCCGCCGTCCGTTAGTTCAACGTGGTGC 127981 32 100.0 34 ................................ TTGGGAATACATGCGAAAAATCAGTGAGAAAAAC 128047 32 100.0 33 ................................ AACTCCTATGACTGCAATTAAAATGGGTCGATA 128112 32 100.0 33 ................................ GTCAAGCGTTGACAACATCTCTGACAAAATGAA 128177 32 100.0 35 ................................ GCGAATGAAAATGTTTTCTGCTATGAGGGCAAAGA 128244 32 100.0 33 ................................ ACGGACAAGAAACGCAAGGTGTTATGCGTACTG 128309 32 100.0 34 ................................ GAGCCTGTGAAGAAGATGGACTATGACGGCAAGC 128375 32 100.0 35 ................................ TGGCCGCCTGGCACAGACACCGCATTATCTATCCG 128442 32 100.0 34 ................................ TGCTGACAGGGGCAAGATAACCCCTGAGCAGTAT 128508 32 100.0 34 ................................ CTGCCGTTCCTATGCACTGTGCACACTCTTCGGC 128574 32 100.0 33 ................................ TTCCGCCGACACTCATGCCGACGGATTTTTTAC 128639 32 100.0 33 ................................ TGATTTTGTGCAAGTATACAAAAGTACGTCATT 128704 32 100.0 34 ................................ ATTTCGCCTGGCTTGAAATTTTTGAGGGAACGGC 128770 32 100.0 35 ................................ GACTTCTTTGAGACAACATTTGCTAATCAGGTAGC 128837 32 100.0 34 ................................ CGAGAAGAAAAGCACATGACTGCAAGGAACAGTC 128903 32 100.0 34 ................................ AAAGCACTGAAAGCGTACCAAGACGAGGTGATTA 128969 32 100.0 34 ................................ AAACTTGGCAAGCAACTATTCTCACACCGCATAC 129035 32 100.0 36 ................................ GGTTTTCATGTATTCGAGAATATGATTCATGAAATC 129103 32 100.0 33 ................................ TTCTCGCTGGCTTAACGCTGACTGCGTAATACC 129168 32 100.0 33 ................................ CACACGCCCCTATGGGTGTGCTAAAAGTCTATT 129233 32 100.0 33 ................................ CTTTTTTTTCTGCCTAGTATACGTGACTGGCGT 129298 32 100.0 34 ................................ CCTGCTTGTCGGTCATCCCGTAGTAATTCTTTGC 129364 32 100.0 33 ................................ GTCACAAAGACAAATATTAAGGGTGGCGTGACA 129429 32 100.0 37 ................................ CGGTCTGCTAAATGACGAAAGTGCTTTGGCGTGGTGA 129498 32 100.0 34 ................................ CGGTCTGCTGTGCCGACGCTGACGCCTGGGCTGC 129564 32 100.0 34 ................................ GACAAGGCGCTGAAAGAAACGAACAAGAAAAGCC 129630 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 88 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTTAGAAAAGTAGCCAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGAAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGTGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTGTGAATGCACAGTGAACAAAATCAAATCGATACCCATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGG # Right flank : TTATTCTTACGAAGGTCACGTTTATAAACATATTGGTTTTGTCAATATCACTTGACACATTTTATTCGAACAAGAATTATGCAGCGAGAAAGATATGATCATAGTAGAGCTTTCTTCGAACTGCCGGAGGCAGCCCACCGTTGGCGGTGCAGATTCTTCTGTTAGCCCAGTAACTCATATAATATCTCCAGATCATAGTCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //