Array 1 1736073-1739511 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024565.1 Microcystis aeruginosa strain NIES-88 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1736073 37 83.8 35 .AAG.......G.....G..T................ GAGACGCGCATAGCCGATCGCATTAATCGAGCGTT 1736145 37 83.8 36 .AAG.......G.....G..T................ TTCGGCATAACTTTAAGCAAAAGCTACTATAGTAGC 1736218 37 83.8 34 .AAG.......G.....G..T................ GGAAAAGTCTAAGTCCAGTGACAAGGTTGAGGCG 1736289 37 83.8 34 .AAG.......G.....G..T................ AATTACACCCGAGTTAACAACGGGCGATCAAATC 1736360 37 91.9 34 .AAG................................. TTTAAATATTTCTGAAGGTGAAAGATTTTTTAAT 1736431 37 97.3 35 .......................C............. CCCTTACCTCACCGGGGATCGTGTCGGTATCACGT 1736503 37 97.3 35 .......................C............. AGCATCAGGAGGGCTATTAAATACTATTCTATCAG 1736575 37 97.3 37 .......................C............. TCTTTAATCATTTTCTGCAATTCATCCAGTTTTGAGT 1736649 37 97.3 35 .......................C............. ATGGTTGACGCTCTTGACGGGGTAAAATCTGACAG 1736721 37 97.3 36 .......................C............. TTTTGACAATGACATCTTACCTGCCCCAGAGCTTGA 1736794 37 97.3 37 .......................C............. AAAACTACAGGCCAAATTAAACCCCGGGAGGTTGCCC 1736868 37 97.3 37 .......................C............. CTCTACCACCCCATCTACCCAATAAAAAACCCGCTTG 1736942 37 97.3 34 .......................C............. ATCTACAGGATATAAGTACCTAATGATCGGTCAA 1737013 37 97.3 36 .......................C............. GGGGAAAGGTGATCAGTGAGGCTGTGGCACAGCGCG 1737086 37 100.0 38 ..................................... TTGGTACGGTGACGACGGGGACTGCTGCCGCTACAATT 1737161 37 100.0 36 ..................................... GCCACCCCATTAATCGTAATGGTGATTAGAATCATC 1737234 37 100.0 35 ..................................... ACCGTTGCAACCCGCTCTAGGACTGGGTTCCAGAC 1737306 37 100.0 35 ..................................... ATGTGGGAGAAATTAAATCACTTGGTGGCGAAAGC 1737378 37 100.0 36 ..................................... GAAATTTTGTATTTATGGGTTTCGATGGAGACTACA 1737451 37 100.0 35 ..................................... TTATCTAATTACCCGCAAAAAATAGAACCGCAATC 1737523 37 100.0 34 ..................................... AAAAGGGGGAACTAAAGAGTTATCCCGTTCGCCT 1737594 37 100.0 35 ..................................... CATCGCAATAATTCTTTCAGCGGGCAAATTCGATA 1737666 37 100.0 36 ..................................... AAAATCATTATTTATAATTCTTTTATTTTTAATTTT 1737739 37 100.0 35 ..................................... TAAAAGATTTGACATTATCACAGTACAAAGAGTCC 1737811 37 100.0 36 ..................................... TTAATACCTTCTCGTAATCGAGACGTTAATCCTGAT 1737884 37 100.0 35 ..................................... TAGCGGCATCGGTGGAAGGGGCGGTGATGTTGTAT 1737956 37 100.0 33 ..................................... TTCTGGAATACTTCGCTAGGGTTGCCCTACGAT 1738026 37 100.0 38 ..................................... GGACCACCGGTATCAAAAGCGAGGCGAGGGGAATAAAG 1738101 37 100.0 40 ..................................... CCAACCTACTCACAGCCACCTCAGTCCACGGGCGACCCAA 1738178 37 100.0 34 ..................................... TCCAAATTTTTCAGGCGAGAACCCGCCTCCCAAG 1738249 37 100.0 35 ..................................... TTTAAATCACCGGCAAAATTTTGCCAGACTTTCTC 1738321 37 100.0 35 ..................................... GTGGTATTCTTTGGTGAGGGGGATTCCTTCAAATT 1738393 37 100.0 36 ..................................... GCTAAACTGCCCAATTCGACACATTTGATGGCTATT 1738466 37 100.0 36 ..................................... CCGATCGCTTTTAAGAATTCCCCCAAAGCTTCCGGG 1738539 37 100.0 34 ..................................... ACCTCATCATCATTAAAATTGATCACCTTTTCGC 1738610 37 100.0 35 ..................................... TTCCCGGGGGGACATCTCACTTTGTCGGGTGCTAA 1738682 37 100.0 35 ..................................... AACAGAAATATTGCTGATTTCGCCGCTATGCCACG 1738754 37 100.0 37 ..................................... AAGTTTTTTCAGATTGCGCTTTCTTCCCCCCATAGGG 1738828 37 100.0 36 ..................................... ATAAGCCTTGCTCCTATTGATTTTCACTCTTTTATT 1738901 37 100.0 36 ..................................... CTTAATGATGAAGCTCACCACGCTTACCGGATAGCT 1738974 37 100.0 35 ..................................... TTCATTATCGTCTGCAAAAACACGAAAATTGCCAA 1739046 37 100.0 35 ..................................... AAAGTCTCGCGCTCGTACAATTCCCTAGCGCGGGA 1739118 37 100.0 33 ..................................... AATTTATCTTGATTTCCGAGTGTGAACTTGATG 1739188 37 100.0 33 ..................................... AGTGCTGAGATTGAGCAAAATATTCTTAAACTG 1739258 37 100.0 35 ..................................... TCAGGGTTTTTCACTAACATGATACTAACTGTATA 1739330 37 100.0 38 ..................................... AAACAAATCATCCAAGCTGTAACCAGTAAGCATCTCGT 1739405 37 100.0 33 ..................................... GCATTGTTTCTAGTTTTCTCCAGATTTCCCCTT 1739475 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 48 37 98.0 35 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : AAATATTTTGATCCGTGGCTTACGAGATGAGTTTTTGAGAGCCATCGGCTCTTTATACAAGTTTCCCGTCTCTATGATTGGAAAATACCCTGGTTTAGCAGGGGAATTTACGCCTGATCTTGATGCGAATCAAGAGTCTATCGGGGATGCGCCGATAGAGAATGCCGAACACTCGATTAGTAAGCAGATGAAGCAGGAAGGGAATCGCACCCCCACTCAGCCCGAGAATGGCTCGCAATCCCTTATTTTTCTTTCCGCCCCACCTCAGCCGTGCGGGGATAGCCACGGCACAAATAACCCAAAAGCCTTACCCAATAAGGCATCTAAGCGAAGTTCCAAAAAACCACGGGGCGCAATCCCCGAAAACCCCGACCAGCTTACGATCTGGGATTTGCTAGACTGATTTTTTGAACCGAGCAGAACCTTGAAAACTGAATTTTAACGAATGGGGCGCAATCCTTACCTGAAACCCTTTTACATCAAGGGCTAAAGGAAGATGG # Right flank : CTTGATAAAATTTAAGATAGTCTCTAGGGAGCATCTCACCTTTGCAATAAGTAGAAATGCTTAATGAGATCAATAAAAAAGTTAAAAAAGGCAACCATTTAGATAAGCACAGCGATGACGAAGGACTTGCGGTACATTACAAGATTGCCAACTTGCACCAGTAATTTTAAGACGATGAGCAATTTGTTTAATTTTTGATTCGACGGAGCCAGAGCCAATGGAAATCCCCTCTGCCTGCAAATAACCATAATTGACAATTCGATGTTTATGCTTGTTTAAATAAGTAATAAAATTCGGTTCTTCGTTACTTGGTATGGTTCGATCAGGGGACAGAAATCGGCTAAATCCTTATCTGGCAAAGGACTTAATTGATTAGCTCGTTCTAGATTGAAAACAATTGGCAAAAATCGAAGCAATGTCTTTCTATATAAGGGTTTCACCCCTTATAACTCCCGTCCATTACATAACACAAACCGAAGAACCAACTTTATTTTGAAGAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 2 1800324-1800658 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024565.1 Microcystis aeruginosa strain NIES-88 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 1800324 35 91.4 38 TA.....................C........... GAGGAATGTTAAAACATTCCTTTTTATTTTCCGTACAA A,C,AC [1800326,1800329,1800331] 1800401 35 100.0 42 ................................... CAAAAACGCTGCCCGACCCGACCTTCTGTGGGAAAACGATAG 1800478 35 100.0 39 ................................... GTGCCACTAAGGCCACGGGTAAAGGGAGCAGTTAGCTGA 1800552 35 100.0 37 ................................... CCAAAAGGATTTTGAATCGCATCTGGCACATCAAAAG 1800624 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 5 35 98.3 39 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : CTTCTTAGAAATAGATACGATTGATGTCGTGCTTGTCGGTAGTGGTTCCATACGAGGTAAAGAATTAGGGCCTGTGGTCACTCTTGAAGATCTTAAGAAGGTTTATCCGTATGATGGTTCTCTTTATAAAATTAAAGTTACTGGAGCGCAACTGACAAAGGTATTTACCCATTTTCTGCGCCCGGAAAACAGAAAGCCTGGGGAAAGTCAATGTTATCAAATCAGCAAAGGTGTTCGAGTAGTTTATAACAATACTAAGAAAGCAATTGAATCTTTCAGTATTAATGAACAACCTGTAGAGGCTGATCGTTTATATGTAATCTGCGTGCAAGATTATCATTATCAAAATTCGCTGAAGAGTTTGAATCTTACGCCTGAAGAAATAGCTAACGCTAAAGTTGTTACTACTTCAAGCCAAGGTGTTCTTGAAGAATATTTAAGTACTCATCAACTCCTTGACGGTCAGGTGGAAGGACGCTGGACTTTTGTTAACTAGAGTT # Right flank : CAGAATGCCAGGGATCAATCCCATCTCATCGGTTAAGAAAAATCCGAGATTTCAGCGAGATTATGCGTCAGTGGGGACAAAAATTTCAGAGGAAGTTTAACCAGACTGAACTCGGCAGAATAATTTATGCGGGAGGAGATGATTTTTTGGGCATCGTTTATAATAGCCAATTTCCCGATCCACAACTCAACTCGATCGATCTCGATTGAGTTCTCCACTGGCTACAAACCCCTCATAAGTAGGGTTTGCTGAATAAATGTGAAATGTAGGCAAGGTCAGGGTTTTGTGGCTTTTCTCGTGAAACAGGTGCAAGATTTTGAGAGAATCGTGCTTCAAAACCTTGCGTCTTCATCGGCCCGCGTCCTGTAGGGGCGAAGCATTCGGGCAGTAACCTATCGGTGAAACCGTAGATTTTCTATCCCAATGCTTCGCCCGTACTTTTTCAGCAAACCCTAAGTAGCGATCGCACTTTCAAAAGACCAAATAATCACATTTAAAGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1802936-1803985 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024565.1 Microcystis aeruginosa strain NIES-88 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 1802936 35 100.0 43 ................................... CGAATAAGATTCCGGGTTTTGGCAAATAAATTGCCGTCATTGA 1803014 35 100.0 33 ................................... TAGAGTTTTTGATCATGCGAAGCATACCAACTA 1803082 35 100.0 36 ................................... ATTTTTCTCACTCAGGCTTGGTAGCCTTTTTCTTTT 1803153 35 100.0 36 ................................... GGTCTAGTACTGATTCTTGTCGGCGTTTTGCCGAAA 1803224 35 100.0 37 ................................... GGGGCTGTAATCAATTGGGTAATTTGAGCGCCGATTT 1803296 35 100.0 36 ................................... CCAGAAGCTGAAGCCCTTAATTTCTGTCCCGGTTTC 1803367 35 100.0 35 ................................... TTCAAGGGGGGTTTTGCCTGTTGCCAACCAGCCTC 1803437 35 100.0 40 ................................... TTTGCCGTTCATGCAGTTCAGGGTTGAACCGCCGGAACCA 1803512 35 100.0 38 ................................... AACGCTATTTTAACCAGAGTGAGAAAGGTTTCTTTTGT 1803585 35 100.0 37 ................................... AGCTAGTCGTTGCTATCGAGGTCATATACTACCACAT 1803657 35 100.0 46 ................................... AGTAATATCTCGCCCTCTAGACAAGGTTTGAGTCGTTGCAATTTGA 1803738 35 100.0 34 ................................... CCAGAACTGCAAGAAGGTGTTCTTTGAAATCGGG 1803807 35 100.0 35 ................................... GTTGAGACACCGTTCTTGAGACCGTTGTACTCATT 1803877 35 97.1 39 ..................................A GATGTGTAGGGTCAATTCATGAATTAACCCTACAATTTT 1803951 35 80.0 0 T..AA........A..T......C.....A..... | ========== ====== ====== ====== =================================== ============================================== ================== 15 35 98.5 38 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : ATTACGATTCATCAAGTTGGTCATCGTCGAGATATTTATTCTGATTAGTTTTAGTTTAATTACTTCCATTCCCAAAAATTGCTCCTTCCAAAAGCGATCGCACTCCCCATCATCAAAATCGCCAAAAAAGTTGCTTCTCCCAAAAGTGATCGCTATTCCTCATCATCAAAAAGCGATGTCGTCCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGAAAAAGCCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATCAGTGATCAGTGATCAGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGTAAGGCTTTGAGCCTCATGACTGAGGTGACTATTGAAAATTATTATTAATAATGTCTATGCTTTTCAGTATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : CGATGCTTAATTAAGAAAAATCAATGAAAACAAAGATTGTTTAAGAAAAATTATTTAAAATTAACACAATAATTAGAAATTTAGTGATAGATATAAAAGTACAAAAGAGCCAATTAATCTAACAATCCTATTTTTTTAGCCAGAGATAAGTCTTTTCTAGGTCTTTTCAAGGCTGTTGAATATACCTATTAAACAATCGAGTTTTCTATAGCTTTATGCCCAAATATATAGCCATCACCTTCTCCCCCGTCCAAAGCTTTATTGAAAAATCCCGCAAATTGAGGGACCTGTACGGAGCCTCTCAGATTCTCTCGGATCTGACCAGTACAATCGTCACCCACCGGCCCGAGCAGTACCACCTAATTAGCCCCGGACTGCTAAACTCCCAACAGGGAATGCCCAACCGTGTTCTCCTGAAAATCGATAGCGAAATGCAGTCCTCCTCCTCCGAGGAAATCATTGCGGAACTGCAACGAGCCTTTTTAAATCGTTGGAAAAAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //