Array 1 433439-434442 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGF01000014.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N45401 N45401_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433439 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433500 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433561 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433622 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433683 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433744 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433805 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433866 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 433927 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 433988 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434049 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434110 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434171 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434232 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434293 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434354 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434415 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450700-452363 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGF01000014.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N45401 N45401_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 450700 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450761 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450822 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 450883 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 450950 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 451011 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451072 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451133 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451194 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451255 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451316 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451377 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451438 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451499 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451560 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451621 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451682 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451743 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451804 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 451907 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 451968 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452029 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452090 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452151 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452212 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452273 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452334 29 96.6 0 A............................ | A [452360] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //