Array 1 94500-95247 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDF01000004.1 Pasteurella multocida subsp. multocida strain ATCC 2100 ZB100003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94500 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 94560 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 94620 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 94681 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 94741 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 94801 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 94861 28 100.0 32 ............................ CCTAGCACGACGACATCACCACTTTTAACTGT 94921 28 100.0 32 ............................ CGATTTTTTAATCCTTCGTCAATTTCCACTTC 94981 28 100.0 32 ............................ ATCATAACTGCCTTTAATTAGATTAAAGCACC 95041 28 100.0 32 ............................ TTTATATTTTCCGTTACTAAGACGCTTAATGA 95101 28 100.0 32 ............................ ATCTTGTAGTCGATGTGCTGACTTGAACTCTG 95161 28 100.0 32 ............................ TGAAATTTTGCGAAAACTGTTGGCAAAACTCG 95221 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAGTGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTAGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26356-26683 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDF01000010.1 Pasteurella multocida subsp. multocida strain ATCC 2100 ZB100009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26356 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 26416 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 26476 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 26536 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 26596 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 26656 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //