Array 1 161646-161128 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWD01000008.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5379 NODE_8_length_275447_cov_82.024767, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161645 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 161584 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 161523 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 161462 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 161401 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 161340 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 161279 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 161218 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 161157 29 93.1 0 ............TC............... | A [161130] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179513-177960 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWD01000008.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-5379 NODE_8_length_275447_cov_82.024767, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179512 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 179451 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 179390 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 179329 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 179268 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 179207 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 179146 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 179085 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 179024 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 178963 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 178902 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 178841 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 178780 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 178719 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 178658 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 178597 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 178536 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 178475 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 178414 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 178353 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 178292 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 178231 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 178170 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 178109 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 178048 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 177987 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //