Array 1 1978-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNPY01000122.1 Vibrio parahaemolyticus strain A5_7 A5_7_contig122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1977 28 100.0 32 ............................ GTCATCAAAATTTATCGATAAATTAAAAGAGT 1917 28 100.0 32 ............................ TTAGCCTTAGCTTTAGCCTCTTGCTTGGCCTT 1857 28 100.0 33 ............................ GATGAGGAAATGGCTGAGTTAGCTCGAAACCTT 1796 28 100.0 32 ............................ GTCACAAGGGTGATTTCCACTCCTTGCTGATC 1736 28 100.0 33 ............................ ATCCGTCTAACGCTTCATCAAATGGGTGGTATT 1675 28 100.0 32 ............................ TTTTTTATTGGATTGAAGTTATGACATACCCA 1615 28 100.0 32 ............................ TCGTTGCGTGTGCCTGGTGTTTATAAGGTGCA 1555 28 100.0 32 ............................ TCGTTGCGTGTGCCTGGTGTTTATAAGGTGCA 1495 28 100.0 32 ............................ GTCAAAACGCGATTGTGATGCAAAACCTCGAC 1435 28 100.0 33 ............................ TATGACAGCTCAATGAGTCTAGCTAAGAAGTTT 1374 28 100.0 32 ............................ CGTCAAGGCTGGTACTCAAACAGAAGCGAAAG 1314 28 100.0 33 ............................ ATACCGCAATATTCACATAAACGAAAGAAATCT 1253 28 100.0 32 ............................ TGGCAGCCTGATAAGAATTGGGCTTCTGGTGT 1193 28 100.0 33 ............................ CAAAGAAAACCGAACTAAAGCTAGCTGCTTCGC 1132 28 100.0 32 ............................ TCGGCGTTGACGCCTGCATTGCAGAAGTTGTT 1072 28 100.0 32 ............................ AACTAGCGCGCTACGCTTACTCAAATCAAAAA 1012 28 100.0 33 ............................ TGAGTTTCTGTTAATGAGCAAGAAACCTCCCTT 951 28 100.0 33 ............................ AATAGATCGTCGCCGCTGAATTGTGCTAGGTCT 890 28 100.0 32 ............................ AATAAACCCTGCCAGTGAGTCTGAGAGAGGCT 830 28 100.0 32 ............................ TTTGCCTTGTGGCAAGTGCATTGGTTGTAAAA 770 28 100.0 32 ............................ TTTGCGCTTCTTCTATGTACCAACTAGGTTTT 710 28 100.0 32 ............................ TTAGACAGATTGTAAACCTTGTAGAAGTCATC 650 28 100.0 32 ............................ TGCTGCCAACAGACTGGCTCGTCGTAACCTTG 590 28 100.0 32 ............................ TACGTAATATATATTGAAAAATGCGGTAAAGC 530 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 470 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 408 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 348 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 288 28 89.3 0 ..........A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTCCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : AGGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAACCCATGATTATTCATATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //