Array 1 268668-268920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMV010000001.1 Actinomadura catellatispora strain DSM 44772 Ga0373993_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 268668 36 100.0 36 .................................... TTGCATGATGCCCTTCCGAAGTACGTACAGGATAGG 268740 36 100.0 37 .................................... ACGCGCTGATCGTCACCCCGCTTGGTCCACCACTCGA 268813 36 100.0 36 .................................... CGCATGTCCGCTGCGTCATGTAGCCTCCTCTCGACA 268885 36 97.2 0 ...........T........................ | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 99.3 37 GTCGCAGCGCTCCACAAAACCGCATCGGATTGAAAC # Left flank : GCTATGAGAAGTCGGGGGCGACGTGGAAAACTGGCAGGGTGCGTGGGCCACGGCGGAGCACCCAAGCCGTCGGAAGGAACGATGGGCGATGTGATCGACATGGTCGGCGAGCTCCGCGTCCCACGCCGGTGGCTGCGTCCGACCGGCGTCGGCCGCGGGATCGTCTGTGTCACCATGTTCGTCCCTGGCCTGGATGGCGTGCATTGCTGCCTCCGGCGCCAGCCGGTCGAGCCACTCCTGACAGGCTGTGCCGCAGTGCTCGGCTGTGTCGTGGAGTCGGCGACACCTCATCGTGTTCTACCCCCGCACGTGGCCAGTGCGCCGTCATTCGACCATTCAGTAAATTGCGAAGAGGTTGGCGCACACCCTCAAAAGCCGGTCTCACCTGCACAAACGTCGCCCCGAAGATCATCTCCAGCACCTCTCCAAGATCGCTTGCGAGGGGATTGGCGCATGATCTTGCAAACCCGCAGGTCAGACCCCCCCTAATTTGGGGTACT # Right flank : CGTTGATCCGCTTCTGCAGCTTCTCCTGCTCCAGGGCTTGATCAAGTTCCCTGAGTGTCCGGGTTGTTGGTGATGCCCAGGATCGGGAGGGCTCGTTCTGGCTGGTCGCGGATTGCTCGGGTGGTCTTGGCGATGTTGGTGGCTTTGAGGGTTTTGAGCAGGCCGATGGCGAGGTTGCGGAAGGTGGCCATGGCGCGGGGTGCGGTGCCGGTGTGGAGGGTGGAGGCGTCCTCGGCGTAGGTCACGTCTCGTACGTGGTGCAGGGCCTCGACGGCCCAGTGGCCGCGGACGGCGGCAGCGGGTTCGGCCGGGGTGGCCTGGTGGGCGTCGAGACTGGTGACGGCGTAGACGGTCTCGCGGCTTTCGCGCCCGCCGGTCTGTTTGCGGCGTCGGTGGACGCGGAGGGCGAGGCGGCCGTGGGGAAAGGCGATCCCGCCGAGTTCGTCGGAGATGCCGCAGGTCTTGATCGAGCGGGACTCCCGGCGGCCGTGTCCGGCGGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCTCCACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 270841-271089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMV010000001.1 Actinomadura catellatispora strain DSM 44772 Ga0373993_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 270841 36 100.0 38 .................................... GCCAGCTCTACGACGACAGCCCGCATTCCATCTTTCAG 270915 36 100.0 38 .................................... CCAAGGCCTTCGGCCTGGCCGTCGTTGAGGACGTCCCG 270989 36 100.0 29 .................................... TCGCGCGCAGGGGAGCTTGTTCTTGTTCG 271054 36 97.2 0 ...........................A........ | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 99.3 35 GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Left flank : GCAAGTTGGCCAAGCGCACGGACCACGGTCACCTCCCAGGGGGCAGCCTCGCTCAGGCATCGGTGTTTGAACAGCAACGAGAGTTGGAGTGGTCGTGAGAGACTGGCTGGGTGCGCGAGTTCCGATCTACGTACCGCAGACATTCGCGGGACGGTGTTGCCTATGCGGCCGCCCCGATCCGGTGTCGGTGGCCGGGTGTGGATCTCTTGGCCCTGTCTGGGCTGGTCACCGTGACAGAGTTGCCCGTAGGATCTGCTGCGGCTGCGAGGTCGCCGGTGCCTGTTCCATCGTGTGCTCCTGTATCCACAAATGGCCTGGCATACCGTTGTCCGGCCATTTCAGAGAAGGCCGGGAGGTTGGCGCACACCCCGAAAATGCCTTCTGACCTGCGTAAACGCTACTCAGAAGATCGTCTTCGGGGTGCTTTCAAGATCGCTTGCGAGGCGGTTGGCGCATGATCTTGCAAACCTGCAGGTCAGACCCCCATAATTTGAGGTACT # Right flank : CGGAAGAGCGACTGTGCGGGTCGCAGAGGTGCCCCCGCCGAGGTCGCCGCGCTGAGAACGGGACTCCCACGGAAGCTGGTCGGCCCCGCCTGAAGGCGGCGGCTGCGATTGTGGCCCCGGAAGTGAGTCGGTGAGGGTTTGCTTTCAACCGCGTCTGTTTGCCGGAGGCGCTGGCGTCCTGCTCGTCCTACAGCGGGGTAAGCGAAACGGTTCGGGCGGCCTCGTTTCGCGCGGGGCGGTCGAGGGCCGTCTTCACCCGCCACACGCAGTGCGGCCAGCGACGCGGTGTTGACGGCTGGGCCGGTGTGCGTTGGCAGGGCGGGGGGCGTGGGCCCCGGCGGGCTCGAGATGTAGACGATGATGCGCGCGAAGCATGCGGCTCTCGGCCTTCATCTCCTCGACCGTTGGAGAGAACCGAATCAGAACCCCGGGATGGCGGTCAGCGCGCGACCCATGCCGGGCGGGTGAGGAGCCGTTCTGCAGGTGCGGGAGCGGTGCGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 274205-274959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMV010000001.1 Actinomadura catellatispora strain DSM 44772 Ga0373993_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 274205 36 100.0 38 .................................... TAGGGCACGGGCGGCGTGTAGCGGTCGATCCGCTCGAT 274279 36 100.0 34 .................................... CTCCGCGACGAGCCATGGTGGCTCCTTTCTTCCT 274349 36 100.0 34 .................................... CTCCGCGACGAGCCATGGTGGCTCCTTTCTTCCT 274419 36 100.0 39 .................................... ATGTCGGCGGCGTTCGAGGCTGCGACGACCACGAGTGCG 274494 36 100.0 32 .................................... TCCTCCGCCTTCTCTGCGGGGAGCGGTGTCGA 274562 36 100.0 38 .................................... CGGAGATCGTAATCGTGCCATTGGCGTTGACAGATTCG 274636 36 100.0 37 .................................... AATTCAGCACGAGTCTCCTCTTGTAGAACCAACGACT 274709 36 100.0 35 .................................... CTTGCGCTCTGCTTCTCGGAGAGCGTCGACCTGGA C [274724] 274781 35 97.2 35 ..................-................. ACGCTGAGCCTTGCGGCCACGCTCGCCGTGTTCTA 274851 36 100.0 34 .................................... TCACCGCGACGGTGGTCACAAGCGAGGATGCTGA 274921 36 100.0 0 .................................... | AAG [274951] ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 99.7 36 GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Left flank : AGGAAGGCGCGCTGGACGATGCGGTCACAGATGGTCGGCAAGCCCCGCGTCCGAAGCTTGCCACCCCGCATCAGCCGCACGGGCCGCAGTGGCTGGGCCTGGTACCTCCGCTCCCGCAACAGCGCTGCCAGTGCCGCCAGCCTGGGCCCGACCTCACGCCCGAACACGGCCGCCGAGACCCCGTCCGCCCCGGCCATGCCGCTGCCCGCGGCCACCCGAGACCAGGCCGCCCACAGCGCCCGGTCGCTGGCCATCCGCTCGACCAGCCGCGACGCCGGCCTCATCTCCTCGCGTGTCCTCATGCCCGTAACCGATGGACGAACGCCGTTCCAGGCCATTAAAGAAGTGCTTATAGGTTGGCGCACACCCTCGAAACATCACTTGACCTGCGCAAACGCCCTCCTGGAGATCATTTTCGCGCCTTGCTCAAGATCGCCGCGGGGGAGGTTGGCGCATGATCTTGCAAACCTGCAGGTCAGACCCCCATAATTTGAGGTACT # Right flank : CGCGCGGTCCCGTGGTCGGGGCCGCGCGTTTCGATGCGGGACGTTCGTCAGTGGTGTGGGGGTGGGGCGGGTGTTGAGAAGTGGGGTGGGGGTGCGGCGTCGCCCTCGCCGCGGGGTGAGTCGGGGCCGCAGGCGGGGCAGTCGGGCTGGGGGTCGGCGTCGATGGGGGTCAGGGCGGGGCCGGCGAGGTCGATGAGGGTGTACGGGCGCGGAGGGTGCCAGCCGGTGAGGAGGTTGAGGGCTTCGCCGAGGGCGATGCCCGCGATGGTCTGGTTGAGGAAGATCACGCTGGGTGTCGGTTCGTCGGGTGCGTCGCGAAGGTAGCCCGCGCTGCGTTTCGCGGCCGTGAGGACCGGGTCGAGTTCCATCGACGCGGCCGCCGGGTCGTACCCGGACAGGCAGAGCAGGCACGGGCCGCCGGGCATCACGGTCGCGACATGTCCGGAGACGTCGAGTGGGCCGGTCGGCCTCGTGGTGATCTCGGCGCCGGTGTCGATGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 4 290806-290170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMV010000001.1 Actinomadura catellatispora strain DSM 44772 Ga0373993_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 290805 30 100.0 39 .............................. AGGGCGAGGGCGGCCGGCTGGTTGTAGAGGCTCGTCCGG 290736 30 96.7 34 ....................A......... GCGATCTGGGTCCAGCAGATCCGGCCCGTCCCGG 290672 30 100.0 36 .............................. GCGGACGTCTGGACGTCTAGACGCCGGGACGCCTAC 290606 30 100.0 39 .............................. TCTGCTGGGTCGTACATGTTGATGATGTGTCCTTGTCCG 290537 30 96.7 40 .C............................ GTGAGCACCGGCTCGGGTGTGTTCTTGTTCGCCAGTGCGT 290467 29 90.0 39 .............GG-.............. TTCAGCGTCTTCCCGAGCTTGTCCGCGGCCCCGGCCCGT 290399 30 100.0 37 .............................. ACTCAGCTCTTGAGCTGATCAGATACTCGGTTGAGTC 290332 30 96.7 34 ................T............. GGCCGGACGCCCCGCCCCCGGGGGAACCGCTGCG 290268 30 80.0 36 ...T..C...T....G.........A.G.. GCGTCGGTCGGGCGTCCAGGTCAGATTGACGTACAG G,G [290245,290261] 290200 30 80.0 0 ............T..G......AG....TG | A [290172] ========== ====== ====== ====== ============================== ======================================== ================== 10 30 94.0 37 GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Left flank : AGCGGCGGAAGAGCTATGCCCTCTCAAGATCATTTTCCCATACTGTCCAGCCCGGTGGCAATTAACCGATTCTCTTGCCAGCGCGTCGACGGTGTCGCCTCAATGGGCCCGGACGATGATCAGACCGGTTGGAGACTCGCCGCTGTGCGTCCGATGGCCTTGGGCGTTATGGTCCTACGCGGGTTCGCAACGAGTGCCGGGGGCATTTGGGCAGGCGTGAAGGCGCATGATCGGACGACTCCGTTATCAATTCGGACTCTTGGCGCCGATCAGGCAGGCAGGTGACGAATTGGCGACAGCGGCGAAGGGAGCTGACTGTTGTGACCATGGTGGAGCCCGCGACGACGTCTTGCAGGATCTCGGCCATCCAAGCCGGAGGCGGAGTTGATCAGGTGGTTTTCAGCGACACGCCGGGGCCGACAGCACAACCGGCGGATCGCTGCAGATTCGGCTCTGGCGGGGCGGTTCTTCCCTCTATCCACCTGGCGCTTTACCGTGGG # Right flank : TGCGCGTGCTCGGCGTGGTCTTTGCTGCTCGGGGAGTATCGATCCGTTTTGTGCTTCGGACGTCGTTGGGGCCGGCCGCGTCGAAATCTCAGGAGGTCTCGGCGGGGAAGGGCTCGTAGGTGCTGGAGGCGTTGTCGTAGTTGAAGGCCGTCCAGCGGTCGGGCTGGATGTGGGCCAGGCGGGCGCCGAGGGCGATGGAGATGGCGACCGGGCCGGTAAGAAAGACAGCGTGTCGTCCGGTGCGGGCGGCGGCCGGCAAGGGAGCGTCGCGCCAGGCTCGGCAGATCTGCTCGACGATCGCGGTGTAGGTCTCGGCGTTCTCGTCCAGGGGGCCGGCGGTCTTCCGGCGGAAGAGCAGGAGGCTGCCGATTCCGTGTTCGCGGCAGGCGGCGCGCACCGGCTGGACGAAGTCGGCACCGAGGTTCTGCAGGTCGATGGCGAGTGCCGCGCGGGACGGGTCTCCGCCCTCGATGCTCTCCACCGGCTCCACGACGAGGAGT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 299832-302053 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMV010000001.1 Actinomadura catellatispora strain DSM 44772 Ga0373993_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 299832 30 100.0 38 .............................. TTGCCCATGAACGCCTGAACCAGGCAGATCACCCCGAC 299900 30 100.0 36 .............................. CTCCAGCACACCCAGCTCCGGCGACCCGAACAGGTC 299966 30 100.0 35 .............................. CTGCGGTGGCGCAGCATCCTGCGGGTCGACTCGTG 300031 30 100.0 36 .............................. GGCGACAACTGCAGCAGTTGTGGCGTGTAGTTCCGG 300097 30 100.0 36 .............................. GTCAAGGCCGAATCGGTGGAGGACGCCCCGGCCGAG 300163 30 100.0 35 .............................. GTGCCGGTGAAGGTCAGCGCGGCCCAGGAGTGGGT 300228 30 100.0 35 .............................. AAGTAGGCGATCACGCCGAAGCCGACGCTCTCGAT 300293 30 100.0 35 .............................. GTGATGTCCGTGTCGGCGAGCGCGGGCTCCCACGA 300358 30 100.0 39 .............................. TCGGGGTTCATCGGTTCTCCGTGGGGGTGTCGAGCGGAA 300427 30 100.0 35 .............................. GCCCGCAGCCTCTCGGTCCCGCGCCGAAGCTGCGG 300492 30 100.0 33 .............................. CTCCAGACGTAGGCGGAGACGTTGCCGCCGCCG 300555 30 100.0 36 .............................. GCGGCCGACACCGTCAACAACGGGCTCGGGACGCTG 300621 30 100.0 39 .............................. GCCTGGAGGTAGTTGCGCTCCCGTAGCTGCCCGGTCAGG 300690 30 100.0 38 .............................. CCTGATCCTGGAGGTTCATCACCTCGCGGTTGATCCGC 300758 30 100.0 39 .............................. TGGCGTAGGTCCATGATGGACAGCGCGCCCCACAACACG 300827 30 100.0 36 .............................. AATGGGCGCGGCCCCGGCCAAAAGCCCGGTGCGGAG 300893 30 100.0 37 .............................. GCGAGCTCCACGCGAGTGCCGGGCTCGTCCCACTCAG 300960 30 100.0 36 .............................. GTGTCGATCTCGTACTGCCACCCGCAGGTGAACGTC 301026 30 100.0 37 .............................. GCGGAGGCGAGCGAGGCGGACACGCTGTTCGATCGTG 301093 30 100.0 37 .............................. GCGGAGGCGAGCGAGGCGGACACGCTGTTCGATCGTG 301160 30 100.0 36 .............................. CCCTTGGCCTGGTTGCAGCACCGCCCGCAGGTGGGG 301226 30 100.0 35 .............................. CTGGGGTCGAACGGGTAGGACGGCTTCGAGCCGCC 301291 30 100.0 37 .............................. TTGAACCTGGAGTGTGTCTCCCGGTAAAGATCGCCGT 301358 30 100.0 38 .............................. CCGGCGCCGTGCGCACCATTTCCGACCCGCCCGACGAG 301426 30 100.0 37 .............................. ATCACGTCCGGGTCCTTCCGCGTGATCCGCACCGGCC 301493 30 100.0 37 .............................. CCGATGGAGTCCATCGCGGACGCCTCGTGCGCCGGGT 301560 30 100.0 35 .............................. AGCATCGCCACGATCCCCTCCGGCGCGACGACCGG 301625 30 100.0 38 .............................. GTGTTGTAGTGCAGCCAGTCACCGTCATGGACGAACAC 301693 30 100.0 35 .............................. TTCGCGAGCTCTGGCCTGGCGCCGCACGCGCGCCG 301758 30 100.0 37 .............................. ACCTCGACAAGGGCGTCATCACGGCCGTCCTGGACGC 301825 30 100.0 34 .............................. TTGATCAACTTCGGGTACCACCAGCAGGGCGCCT 301889 30 96.7 35 .....T........................ GCGAAGGCCGACGCCAAGCCCCCCGCGAGCGAGCC 301954 30 96.7 38 ...........T.................. GTAAACTGCCCGCGCAAATCGTGGAGACCCGGTTTCCC 302022 30 93.3 0 ....G.................G....... | GG [302039] ========== ====== ====== ====== ============================== ======================================= ================== 34 30 99.6 36 GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Left flank : AACTTCTCTACCTCGACGCACTCACGCTGACCCGACGATGCCTGGAAGCCACCCCGTACAAGCCCTTCCGTATCTGGTGGTGAGAACGCACCGTGCACGTCATCGTCGTCTACGACACCGCAGCCGAACGAAATCCCCGCATCCTGCGAACGTGCCGCAAGTACTTCCACCACGTACAGCGCAGCGTCTTCGAGGGCCAGGTCAGCGCAGCCCAACTACGTCGCTTCCAGAAGGAGGTCGAAACCCTCCTGGACCTGAGCTACGACAACGTGATCGTCTACACCTTCCCGCCCGGCACAACCCCCATCCGCCACGCCTGGGGCGCCGCCGAGCCGGCACCCACCGACGTCCTGTAGCTCTCGGCCCCACTCTGCAAGGCTCAAAGTCGATCAAGAAGTTTCAGCGACACACCGGGCCCATCTGCACAACCGGAGGATCGCTGAAGATTCGGGCCGACGTCGCCAATGCAAGCCGTACACCACCTGCGGCTTTACCATGGG # Right flank : CCTGGCTCACGACTCTCATGCTCGTGACAGGATCGCCCAGGTGCGACATCACCGTCCGCATCGGCATCGGCCAGGCACGCCTGACCGATGCCGATAGCTTCTGCGCGTTGTCGTCCGCTACGACGTGTTGCCTGACAATCGCATAACCGCCTGCTCCGCTGAGAGCAAGGGGATTGGCTGGCTGGGTAGTGGGCGTGGGCCGGCTTCTTCGATCACGTGCGTGGGGCCGTAGGGCCAGAGGCCGGACATGAGCGCGATGAGGCTGTTGGCTGGCCAGCGCTGGAGGGTCTCGTGGACGACGTCGGCGTCCGGCCCTGGGGTGGCGAACCAGACGACCGCCGGGCTACCGCTGGACGGATCGTTCGTTGCGCGGATCATCGTGGTCATATCGGCCTCATTTTCGAGGTGCTCGATGGCGTCCTCCAGGCTCTCCGTGACCTGCAGGCGTGGCCTGCTGCTCTCGATGACGGTCTCGGCCGAAAGGGGCGAGAGGAGACGGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 7643570-7648475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMV010000001.1 Actinomadura catellatispora strain DSM 44772 Ga0373993_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7643570 29 100.0 32 ............................. TCACCCCGCCCTCCGGGACGCGATGAACGCCG 7643631 29 96.6 32 ............................A CCGATCTTGCTGGCGAGCAGGTCCACGTCCGC 7643692 29 100.0 32 ............................. CGGGCAGCGACCTGAGCGGGCGCCATGCCCGG 7643753 29 96.6 32 ............................A CCATCGCCCGCACCGTCGGTTCCGCGTCCGGG 7643814 29 96.6 32 ............................T CAGGCGGCCGAGCGCTACCTGGAGTTCCATGC 7643875 29 100.0 32 ............................. CGCGTTCAGCGACACCGCGGGCCGGTCGTGGA 7643936 29 100.0 32 ............................. CGGAGCCCGAGCCGGACATCGAGGGCGAGGCG 7643997 29 96.6 32 ............................T CCCCGCCGCCCGCTGAACCGTCGTCATCTTCG 7644058 29 96.6 32 ............................T CTCACATGCGATTCATCATCACCGTCCTGGCG 7644119 29 96.6 32 ............................G GTGAAGGTCGCGACGGGCGCGGCCGCGGCGAC 7644180 29 96.6 32 ............................G GAACCCGCCGCGAAACCGGCCCCGGCGAAGCC 7644241 29 96.6 32 ............................G ACCATGATCGCTTGACGGCCCCGAACATTTCC 7644302 29 96.6 32 ............................G ACCCACGAGGCGTACGGCGCGATGCGCGCGAT 7644363 29 100.0 32 ............................. GCCGCGTGGGCGTCGATCAAGAACGCCGTGAT 7644424 29 100.0 32 ............................. TTCACGTAGGCCCAGTACCAGCGCAGCGCCGA 7644485 29 96.6 32 ............................G CAGGCGCTGTACGGCGAGGAGGTCGCCGCGTG 7644546 29 96.6 32 ............................G TCCACGCCCACGCCGTACTCGCGGTGCTCGGT 7644607 29 96.6 32 ............................T CCGGCAGTCGTTGCAGCGCACCGCCGACACCA 7644668 29 96.6 32 ............................T AGCCGACCTTGCGTTTGGGGACGACCAGGCCC 7644729 29 96.6 32 ............................G CCGGGGATCTTCGCGGCGACGTACGAGCGGGT 7644790 29 96.6 32 ............................T ACGCATACGGGCGAGGCTTGCGGAGAGTCTTC 7644851 29 96.6 32 ............................G CTCAAGGACCGCGGGTTGTCCAGTCCCGACAT 7644912 29 96.6 32 ............................G CGCGCCGACCTCGCGCACATGATCCAGCTCGC 7644973 29 96.6 32 ............................G CCGCCATGATCGCGGAGGCCGCGACGGATTTT 7645034 29 100.0 32 ............................. GCCCATCACCGCCCGGTCGCGACGTCGGCGAT 7645095 29 100.0 32 ............................. ACCGCCCGCAGCAGCCGCACGCAGTTCGAGCT 7645156 29 100.0 32 ............................. GGACCTTGGGGTTCATGTTCCACGCGTAGAGA 7645217 29 96.6 32 ............................G TGGGGCGGGTACGTCTACAGCTCGGACCCGCG 7645278 29 96.6 32 ............................G CCGCAGGTAGACGCATTCTGCACGTGCATCGG 7645339 29 100.0 32 ............................. CCGAGCGCCTCGGCGAGGGTCTCGGAGTGCAT 7645400 29 96.6 32 ............................G GACGCGGGCGCGGGCGCCGTCGAGTTGGAGGC 7645461 29 96.6 32 ............................G AGGTCCCACAGGCCGCGCAGGCGGTCGACCTG 7645522 29 100.0 32 ............................. TCGCACGGCGTCAAGGCGTACACCTCATGGGC 7645583 29 96.6 32 ............................T GGCTATGAGGAGTGCACGGTGACGCTGTTCCG 7645644 29 96.6 32 ............................G TCGTTGCCGGAGTTGTCGAACGTCCACGCCGA 7645705 29 100.0 32 ............................. TGCCCCTCTCCTGGCCGTGGCACCCACACCGA 7645766 29 100.0 32 ............................. TGGGTCGAGCTGACTGGGGACCTGCCGCGGTA 7645827 29 100.0 32 ............................. ATCACGAGCGAGCCCGCCGAGGACGTCACCAT 7645888 29 100.0 32 ............................. CTGGCGATGGCCGCGAACGCGACCCTTGCGAC 7645949 29 96.6 32 ............................G TTCTCCGGGTCGCCGGGGGTGCGGGTGGTCGT 7646010 29 100.0 32 ............................. GATGCGCCGGGCTTGGACCTCTGCCCGCACAG 7646071 29 96.6 32 ............................G ATCTCTGTCACGACACCTGCGGTTGTGAAGTA 7646132 29 100.0 32 ............................. GGTGGCCACAGTGTTCATGCTGCGGCGAGCCC 7646193 29 100.0 33 ............................. CGGTGACGGTCTCCACCCGGTAGCCGGTCGGGC 7646255 29 96.6 32 ............................G GGACGCGGCGCTCCGGGCAGTACGGCGGGAAC 7646316 29 96.6 32 ............................G CGCAGACCATGACGAGGCCGCTGATGTTCTTG 7646377 29 96.6 32 ............................G CCGGTAGGGGCGGCGGTCAGGCGGCGTCGGCT 7646438 29 100.0 32 ............................. CCGACCCGGGATTCCCGGCGCCGGTCCCCCCG 7646499 29 96.6 32 ............................G GTCGGCCGGTCCATGGAGGACGCGTCGCTGGA 7646560 29 96.6 32 ............................G GCATAGCGGGAACGGCCCGCACAGAAGGGATC 7646621 29 100.0 32 ............................. TCGACGACGGTCGTCTTCCCGTTCTGCCTGGC 7646682 29 96.6 32 ............................G GCGTCCGCGCGTGCGCTGCCGTCGGAGGGCGT 7646743 29 100.0 32 ............................. TTCGAGGAGACGAGCTGGTGGCGGATCGAGCC 7646804 29 100.0 32 ............................. CGCACCGGAACGCAGGGCTGGTCATGGGGCCG 7646865 29 96.6 32 ............................A GGGTCAACGACCCTGAATGGTGGGGTGATGAG 7646926 29 96.6 32 ............................T GCCATCAGAGGTTCTTTACCTTCCTTAGTTCA 7646987 29 100.0 32 ............................. ACACCACTTTGTGTGTGGACACATGTGTCACT 7647048 29 96.6 32 ............................T ACTGCAGGAATGACGCTACTGGGCGTGAAAAT 7647109 29 96.6 32 ............................G CGCTTGAGCCCGTACCGGGCCAGCACCGGCAG 7647170 29 100.0 32 ............................. TGGACGTGCGCGGGACGGACGGGTCATACGTC 7647231 29 93.1 32 ................A...........T CGGAGGGGATGTTGACGCCGGTTGTGTGGAGA 7647292 29 100.0 32 ............................. GAGGCCGGCGAGGACATCTCCGTCGAGGACGT 7647353 29 100.0 32 ............................. GGGCGGCCCGAGTTCGCCGGGCTCGCGGCCGA 7647414 27 93.1 32 ........--................... TTTTGCCTTCTGAGCTGGGCACGGTCCCATCG 7647473 29 100.0 32 ............................. CGGTACACCCGGTTGGTGATCTGCGCGCCGCC 7647534 29 96.6 32 ............................A CTTCCGCCGAACTCGCGGATCCGATTGCGGTC 7647595 29 96.6 32 ............................G ATGTCCGTGACGGGCCACCGTTCGACGGGGGC 7647656 29 100.0 32 ............................. CCGATCGATGCTCAGCATGAGCACTCGCAGGA 7647717 29 96.6 32 ............................G CCGTCGCGGATCAGCTCCGGCCCGCGCCGCTC 7647778 29 96.6 32 ............................T CTCGGTAGTTGCTTCGCTACGGGCTGTATGGT 7647839 29 93.1 32 ....................T.......G TAGACCTTCGACGCGCGGACCGTGACGACCCG 7647900 29 96.6 32 ............................G GGGAGACTGTGTGTCTCCCCTGCTCTCCCCCA 7647961 29 93.1 32 ....C.......................G GTCTCCTTGATCTACCCCCGGATCCCCTGCTG 7648022 29 100.0 32 ............................. CCCGACCGCCTCGCGTCCCTGTACGGCGCGCA 7648083 29 100.0 32 ............................. CCCGACCGCCTCGCGTCCCTGTACGGCGCGCA 7648144 29 96.6 32 ............................T CCCGCATCCTCCAGCAGTCGCTGGTACTCGGC 7648205 29 96.6 32 ..........................C.. GTGTCGCTGTCCGGGATGTCCTCCCGAAGCTC 7648266 29 96.6 32 ............................G GGCACGCCGTACGTCCTCGTCGCCACGACCCA 7648327 29 93.1 30 ..............G.............T TTCTTGCAGCAGGTTGGCGCTGCTCGTTTC 7648386 29 93.1 32 ........T...........A........ GGCCGCAGCGACGCGCAGGTCAACGTGGACAC 7648447 29 86.2 0 ........T...G...T..........T. | ========== ====== ====== ====== ============================= ================================= ================== 81 29 97.5 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : CGGTACCGCTCTACCGTTCGTTGATCCCAGGTCAAGCCCGCAGCAAGCACACGGGCCGCGCCAGCTGCATCCATGTGCTGGAACGCCGGAGTCGCCTTGCCGAAATCATGTATCCCGCACAGCCACGCGAACAGCCGGCGGCCCCCGCCATCACCCGCAACGCCGTCCAGCATCTGCCGTACTGATGGCGCCAAATAGTGATCCCACATGAGCTCGGCAACGGCCGCCGTGTCCAACAGGTGCTGTAACAGCAAGTTGGACCGGCCGCCACCCTTGCCCGCGCTCTTGCCCCATAGCACTGCCAACGGGTTCTGGACGCTCGACGCCAGCCTCTCGTAGCTCACAACGCGTAAGGTAGTCGTGACCACCGACAAAACCGACGACGCAGAAGCTGCATCGCACCGCAGCGGAGTCCCAAACATTCACAATCCTCGACCATGATCGTCAACCAACCGAATGAAAACCGCCCCCCTCGCCGATAACGTCGCAGGTCAAGAAGC # Right flank : CTGGACGACGGTCAGTCGGGATTTTGAAACGGGACGGGATTGTTAGTTGGCAGCGGTGGGTGCGGTGGGGTTGTGGGTGCAGCCATGTGCGCGGTCCCCCGTACTTTATTTGAACCAGCGCAGGGAGATCTATCCCGTGTCTTTGGGACCAGTTTGGAATGCGGGCCGGGCAGCTCTCGATAGCAATGGGCCCATACGCGGTAACGCCGCGTATGGGCCGGAAGGTTGCTACGGCGGGCAGCTATCCCACCGGGACGCGGTAGACATTGCCGATCAGGGTTGATGTCGGCATGTGCAAATGGTTGTGGTCGCCCCTCGGACACGTACCGTTTCCCCAAATTCGGGGGCATGGACGTCACGATGCGATCCGGGTTGAGGTTAGCCTCGACCCGGATTTCTTGTTTGTCCGGGTGGTAGACGAGCCGGACGCCACGCGCCTCGAGATGTGGGTGTGGCCCGCCGTCCACAAGCGTGTAGCTGCGAGGAGGACGGCCGCCGAG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //