Array 1 125374-124139 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQKW01000169.1 Escherichia coli strain LTSIAB78 NODE_2631_length_160816_cov_48.542583, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 125373 29 100.0 39 ............................. GTGAACGTGACAACGCCCGCGACAGAAACGTNNNNNNNN 125305 29 93.1 32 NN........................... AAACTCCGTGGTGTAGTGCGTTTGTTGGTGCG 125244 29 100.0 32 ............................. GCTGGCGCACCTTACGCAAAAATAGACGTAAA 125183 29 100.0 32 ............................. GGAAGAAGCGGTAAAGCGGGTTCCAGTTCAGC 125122 29 100.0 32 ............................. ACGACTGAATCCGGCGAGGCTATCAACTGGCC 125061 29 100.0 32 ............................. CCAGGGAGCGAAGCTGTGGCCATGCTGAAAGG 125000 29 100.0 32 ............................. GCGATCGTATTTTCCGCTACGTCGCTCAAATG 124939 29 100.0 40 ............................. GCTGCCGCGCTTTCGGTGTGGGAGCAGTATNNNNNNNNNN 124870 29 100.0 38 ............................. TCGTTGATGGTGTGATGAGTGTACAAAAANNNNNNNNN 124803 29 96.6 32 N............................ CCGCACACGTCGAGCTGGTGGGGATTAATGCT 124742 29 100.0 42 ............................. CAGGGTAACTGGCTGCTCCTCAACCATTCCGCNNNNNNNNNN 124671 29 100.0 32 ............................. TTGGTATTAACGGGAATGTAGTCACTCCAGGA 124610 29 100.0 37 ............................. AAATTAATTTCGAAACGGGCGTTGATGGTGNNNNNNN 124544 29 89.7 37 NNN.......................... GTGACCATAAGGGCATTTCATACTGCCTNNNNNNNNN 124478 29 93.1 32 N.......C.................... GGGTTTTAGCGACCGGACCAGAGTACGCAACA 124417 29 96.6 32 ........C.................... TTGCGCCTTAAGTTCCTTAACTTCCTCTGTAT 124356 29 96.6 38 ........C.................... GGAGTGATGAATTGGAAGTAACGGATAACCNNNNNNNN 124289 29 93.1 32 NN........................... CAGTAAACGTTCGCGCGTTCTCGCGCTCACGA 124228 29 96.6 32 ............................C TCTGTGTATTCGCTACCAGCCAGCACCGGTAC 124167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 20 29 97.8 35 GTGTTCCCTGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCACCAGCTATCCCGGAACCTGAATTGCTAGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAAAGTTTGAATTTAGTTGGTAGATTGTTGTTGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAGTTCCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //