Array 1 20-1639 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZUH01000027.1 Neisseria meningitidis strain Neisseria meningitidis isolate B192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 86 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 152 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 218 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 284 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 350 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 416 36 100.0 30 .................................... CTTGATAAATGCTCCCCTGTTCTGCTAGAG 482 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 548 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 614 36 100.0 30 .................................... CGGCATCTACGACGAGGACGAGGCACAGCG 680 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 746 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 812 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 878 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 944 36 100.0 30 .................................... TTACTTTCTTGGTTGGTCTTCTTGATGTTT 1010 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 1076 36 100.0 30 .................................... TAGAACTTGACGGCGGTTTGATTTCGGCAA 1142 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 1208 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 1274 36 100.0 30 .................................... CTTCGATGGCTTCGACGTTGAAGCGTTGGT 1340 36 100.0 30 .................................... ATCCGTGCCGAACAGTGCGTCGAAACGGTT 1406 36 100.0 30 .................................... GAAGGCGTGCTGGCCGTTAATGCCCGTTTC 1472 36 100.0 30 .................................... AGATGCCCGTTGGATAAAGAAAAACGGCCT 1538 36 100.0 30 .................................... AGCGGCATAGAAGAAGGCGAACGGGCTGTT 1604 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CTAAAATATGAAAACTCAAG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //