Array 1 264417-265787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOP01000117.1 Escherichia coli strain HT2012009 NODE_452_length_388719_cov_44.679531, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264417 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 264478 29 96.6 32 ...........A................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 264539 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 264600 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 264661 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 264722 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 264783 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 264844 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 264905 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 264966 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 265027 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 265088 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 265149 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 265210 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 265271 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 265332 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 265393 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 265454 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 265515 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 265576 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 265637 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 265698 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 265759 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 291490-292435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOP01000117.1 Escherichia coli strain HT2012009 NODE_452_length_388719_cov_44.679531, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 291490 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 291551 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 291612 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 291673 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 291734 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 291795 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 291856 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 291917 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 291978 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 292039 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 292100 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 292161 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 292224 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 292285 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 292346 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 292407 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //