Array 1 60478-59473 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLNB01000012.1 Escherichia coli strain MOD1-EC5515 MOD1-EC5515_12_length_135864_cov_37.1559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60477 29 100.0 32 ............................. AAATATTAGGGTTTCGCGCTACGTTCGACACC 60416 29 100.0 32 ............................. GGCCGTATTAGCGGCCCGGTGTTATCGCTGGT 60355 29 100.0 32 ............................. GCGGGGATTTGTTGGCGAAACAGGTCGGCGTC 60294 29 100.0 32 ............................. AAATTATTTTTTGGGTGTTAAAAACCAGATTC 60233 29 100.0 32 ............................. ACGGAACGACCAGTGCGGATCACGCGTGCTGG 60172 29 100.0 32 ............................. CCTCGCGCACAGTTTCGCCAATTCCTCTACCC 60111 29 100.0 32 ............................. GGCTGGCAGCGTATCCTGGTGCGTGAATTAAC 60050 29 100.0 32 ............................. CCGAGTAAGTCGAGTTCACGGGCGCGGGATTC 59989 29 100.0 32 ............................. AATTTCCCGAGTTGGCCGCGGGCCTGCATTTG 59928 29 100.0 32 ............................. TGTTAATAAAAAAGGCCGGTTTCCCGGCCTGA 59867 29 100.0 32 ............................. AAGCAACAAATGCTGTATACGGCACATTTATA 59806 29 100.0 32 ............................. CCCTCGATCTCGATGCCTAATCGCACAGCGTC 59745 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59684 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59623 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59562 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59501 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87869-86681 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLNB01000012.1 Escherichia coli strain MOD1-EC5515 MOD1-EC5515_12_length_135864_cov_37.1559, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87868 29 100.0 32 ............................. TGATCGCCGGTCACGGAGCCGGGGCGCAAACC 87807 29 100.0 32 ............................. ATGCAACAGGTGCCAAAGCCCCCGACGGCACC 87746 29 100.0 32 ............................. CATGAGCCAGGACGACGCCCGGTCCGAGGGCG 87685 29 100.0 32 ............................. CGCAAAAACCATTTTTTCCCAGCTGGAGGTTA 87624 29 100.0 32 ............................. TCGCTGGCGGGGACCGATCATATCTGTCAATC 87563 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 87502 29 100.0 32 ............................. TAGACAGAGTAATAAATAACGCAGACAAAAAC 87441 29 100.0 32 ............................. AGTAGCCTGGAGGCGCTCGCGCGCCTCTTCAG 87380 29 100.0 32 ............................. TTTTGTGATTCAGTAATCGTTTGAGTATGTAC 87319 29 100.0 32 ............................. CGAATCCCAGCCTTGAAATTTTGGCTCATGGA 87258 29 100.0 32 ............................. CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG 87197 29 100.0 32 ............................. AGTGCCAGCGCCGCGCACGCCTGATCATATGT 87136 29 100.0 32 ............................. GGGTTCTATTTCCTCGGGATTTGCCGACACGC 87075 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 87014 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 86953 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 86892 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 86831 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 86770 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 86709 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //