Array 1 127804-126920 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBKI01000003.1 Escherichia coli strain EC246 NODE_3_length_255646_cov_16.6524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127803 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 127742 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 127681 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 127620 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 127559 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 127498 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 127437 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 127376 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 127315 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 127254 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 127193 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 127131 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 127070 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 127009 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 126948 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154813-153503 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBKI01000003.1 Escherichia coli strain EC246 NODE_3_length_255646_cov_16.6524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154812 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 154751 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 154690 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 154629 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 154568 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 154507 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 154446 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 154385 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 154324 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 154263 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 154202 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 154141 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 154080 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 154019 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 153958 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 153897 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 153836 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 153775 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 153714 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 153653 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 153592 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 153531 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //