Array 1 13753-12927 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFF01000028.1 Lactobacillus helveticus strain IMAU80756 Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 13752 32 100.0 35 ................................ TGTTCGGCTCTATCTTGATGTCAAAGATCCTAACG 13685 32 100.0 34 ................................ TTACTGCGATGCCATAAATATTGCCTCCGTTGGC 13619 32 100.0 34 ................................ TTTGACCGACTGCATACGCATCGGCTGCCGAATC 13553 32 100.0 34 ................................ AAAAGGTGAACCACATCAAGAATCCAAACAAGAT 13487 32 100.0 34 ................................ ATAAAGGTCTTTAAGACCAGTACCATTAGCAAAG 13421 32 100.0 34 ................................ TTGGTTACGACTCTGACAAAAGCAAGAAATCAGA 13355 32 100.0 34 ................................ CTTTCGCTTTGCAACCAAGCATGGAGGTTTTTTA 13289 32 100.0 35 ................................ TATTGAAAGTCTGACTAAGCAGCAACAAATTCAAG 13222 32 100.0 34 ................................ TTAACGGAAGTATGGGGCTTTCCAAACATGCCAC 13156 32 100.0 34 ................................ TTTTTTTACCTCCCTTAATCCTTACAATTTTTAT 13090 32 100.0 34 ................................ TTGCATGTTATGTTTGATCATAAACAATGCAATG 13024 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 12958 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 100.0 34 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5253-5586 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFF01000020.1 Lactobacillus helveticus strain IMAU80756 Scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5253 29 100.0 32 ............................. AACTTCTCCAGCTAATGCATGAGGCGTCTTAC 5314 29 100.0 32 ............................. AACGTTTTTGTTTCGTTTTCACTTGAACGTAA 5375 29 100.0 32 ............................. AATCTTGTAACTCACCAAAAGTATAAGCATCA 5436 29 100.0 32 ............................. AATCTTGTAACTCACCAAAAGTATAAGCATCA 5497 29 96.6 32 ............................C ATCATTAAAGTCAATGAAATATGTAAATAATA 5558 28 93.1 0 .................T......-.... | A [5579] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTACTAGTTAAGTAGTGATATCCCTTTTTAGCTTGATGATCAACTTGAGTTAAAGCAGCATCCTTGTAAATAGTAGCATTTTGCTTTAAGCGAATAATCTTAGGATTAGATGAAAGATAGTCGCTTTTATTGAAATCCGAAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : CTGTCCTGGAACGTACAGAAAAATAGCTTGCAAACGCCGGTGTAACGGCATTTTTAGGTGATCGGAAGTGTACTGATTCTGGCTTTAACGATTGGAATTAGTACACTTTTTCTATTTGAAGCTGGCGGGTCGAGTGTTCTATGTCCTATTTCGATAGTCGAGTAGACGATTGTCCAGTTTGGCAGGTCGTGTCGATTAGGGTAGTGAAAGTAGAGGTGAGCCTTGATATGGTAGCGTTTGTGGTATGTACGAATCGGTCAGTTTGGTACTAAGGATTGAGTTAGGCAGATTGCAAGAAATAACTTGAACGAATTTAGTGACGTAGATTAAGCAAGAAGATCTCGATTGGTGTATGCCAATTAAGACATTTAAGTGGCCGTGAATTCAGATACCAATTGATTTGAACCAGTTGGTAATCACTTAGTTCTTCAATGGCTTGTCCCTTGGGAATAAACCGTCGCAAAATTCGGTTACGGTTCTCATTACTACCGCGTTCATGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //