Array 1 2487493-2491398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022121.1 Dehalobacterium formicoaceticum strain DMC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2487493 30 100.0 36 .............................. TTGAGCAAATCTTCATCGCTTATTTCATCAAACTTA 2487559 30 100.0 37 .............................. CCAAGAAAGTAATAAGCGGCGCGGGAGAGATGCGATA 2487626 30 100.0 35 .............................. AGGACTTGGCTGAGTTTGAATTACTGGACAGAATA 2487691 30 100.0 36 .............................. TTAATTCTAACTGTTATTAGATTTTTTTCTCCTTGC 2487757 30 100.0 36 .............................. AGCGTTAATTTTAGCTGGTGTAAGTATTACGTCTGG 2487823 30 100.0 36 .............................. AAACGACAGAATGATTGATAGACAAATTCGAGGAGT 2487889 30 100.0 36 .............................. TTGTTCTGCCATTGCTCCCGGATGTGGGGATATTTA 2487955 30 100.0 35 .............................. TAATTTCCATAACCACACCTTCTAAACCATTGATA 2488020 30 100.0 36 .............................. ATCTCAAACTCATTTTCATTGTTCTGCCATTGCTCC 2488086 30 100.0 36 .............................. ATAAACTTGTCCGCTTTCTCGGAAAAAATAAATGCA 2488152 30 100.0 37 .............................. TGTTCCCTGCAAATCTGATTTACTTTAAGCAAGTATT 2488219 30 100.0 36 .............................. TAAAAGAATCCTGTTCCTCCGTATTCGACAGTGCTA 2488285 30 100.0 36 .............................. TAGTTTGCATTATGCAGGTAATACACGCTGTAAAAG 2488351 30 100.0 35 .............................. AAGCTAATAAACCAAATCTATTTATTTGTCTAAAC 2488416 30 100.0 36 .............................. AAGTTAATAGAAATGTATATGTCTTTAAAAGGAAAA 2488482 30 100.0 35 .............................. TAGTTTGCATTATGCAGGTAATACACGCTGTAAAA 2488547 30 100.0 36 .............................. TAGCTTGTCAGGCTCCGGAAAGATTCTTCACATATA 2488613 30 100.0 35 .............................. AACTAACGTCAGTTACATTCGGGTCTGTTTCTGTA 2488678 30 100.0 35 .............................. TCACGCCAAAACTCCCCGCCGCTGTGCTTTTTAAA 2488743 30 100.0 36 .............................. CGATACAGCATGATATCGCGCCGCTTGCCCCAACGG 2488809 30 100.0 36 .............................. AAAGGGAAAAGACAAATTAATACTTCTGGTTGTCTT 2488875 30 100.0 36 .............................. GGTGTTGTTTATACACAAGTAAAAGATCTTATATTT 2488941 30 100.0 36 .............................. ATGGCTTTTTGGGGCATTTGCTTTTTTAAAGACTTA 2489007 30 100.0 35 .............................. CCAAGAAAGGGGAGAAGAGAAGTGCCAAGCAAACC 2489072 30 100.0 36 .............................. ACATTACTGCCAGTTAGCGTGACACCAGAGCCGGCT 2489138 30 100.0 29 .............................. AAGTCAAACTTGGGCTGCGCCTTCCGGAA 2489197 30 90.0 35 T.C..T........................ AAACTCGCGCCACCCATGCCAATTATTAGCACTCA 2489262 30 100.0 36 .............................. TTGATCCCAACGGCCAAAAAGGCGGCCAGCAGCTCC 2489328 30 100.0 37 .............................. TGATTATGACTTAATAAGTTATGAGTTGGTGCAAACA 2489395 30 100.0 35 .............................. TTGATCCGCTCTACAAAATTATTACCGGTGACGAA 2489460 30 100.0 35 .............................. TTAAACTACCGTCTTTAAACAGTAGCGCCTCAGGA 2489525 30 100.0 36 .............................. AAAACAGGGAGAACTCCCTTGATTGATCCAGGCACG 2489591 30 100.0 35 .............................. TGGCTAAATAAGCACATAAAGGATTGGCAGGAAGA 2489656 30 100.0 37 .............................. TGTGCGAGACTAATTACTCCTAGCCTAGATGTCTTAA 2489723 30 100.0 36 .............................. AAATATCACCTCCTTTCGTGAAATTGGTACCTGGAC 2489789 30 100.0 38 .............................. CATTGACCCAGGTTTCTGTCTGTACTCGTCCGCTGCGG 2489857 30 100.0 35 .............................. ATGTTGGCGTCCTTAGTTGCCCCACATCTATAAGC 2489922 30 100.0 37 .............................. GCACATAATCGCTACACGCTTCCATATACCCCTCGCC 2489989 30 100.0 35 .............................. GAATTAATGAAGAAATTGAAAAGGAAATCGAAGTC 2490054 30 100.0 36 .............................. GATTTTGATCTAAGGATTTTTAAAAAATGCTTATCA 2490120 30 100.0 37 .............................. GAAATTACCGGAATTATATCCTGAAGGGGGAAAAGTA 2490187 30 100.0 35 .............................. AGGGAAAATAATTTTATTGGCGGGTGGTTAAATGA 2490252 30 100.0 36 .............................. AATATTACCTTAAATTTAATCGCAGCTGGGGTTTGA 2490318 30 100.0 36 .............................. CGTGGGGTGCGTCTCTTGATCCGGATACACCGCAAG 2490384 30 100.0 36 .............................. ACACCTCCTTTTTTAAAATGCCATGATCACATTGGC 2490450 30 100.0 35 .............................. GCATATCCCGTATATAGGCCATGAATATTCGCAGT 2490515 30 100.0 35 .............................. AAAGTTTGATCTAGGCTGCGTATTCGGATGGGTCC 2490580 30 100.0 37 .............................. CCATATCAACCCCTTTTTAATCCATTAAACGGATATA 2490647 30 100.0 36 .............................. GGTTTGCACTCGGCCTTGCAGGTGATAATGTTGGCT 2490713 30 100.0 35 .............................. ATTATTACAATGCATTGATGCTCTGCTTTATTTTT 2490778 30 100.0 36 .............................. GAGTGACCTTGTAGGTCCTTACTCTATGCAAGCCCA 2490844 30 100.0 35 .............................. TCAATATAGGATCCCTTTTGGAACATTAATCTCAT 2490909 30 100.0 36 .............................. TTAGTTTAACCTCCTAAACCTCTTATCGAAAAACTC 2490975 30 100.0 36 .............................. TAAATGCCATAAAGGCTGGGGATATGGCGGTAGCTA 2491041 30 100.0 35 .............................. ATAAAAGAATGGGACGAAAACGGGAAGTGGATAAC 2491106 30 100.0 36 .............................. ATACCCTCCTTTAAATTTTCAGTATCTTTGATAGTA 2491172 30 100.0 35 .............................. TGGGTACAATATTGTTATAATCTTGATTATTTGAA 2491237 30 100.0 36 .............................. TGCGGAAATTCCTCTCGTTGCGGTATATCTCTAAGC 2491303 30 100.0 36 .............................. GAGTCAAGGATCTTGAAAAGCGGAAAAGACAAAACG 2491369 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 60 30 99.8 36 GCGGAACCTCCACATTGGATGTATTGAAAT # Left flank : GGAGAAAAGTTTTACCCCTTTTAGTTTGGAGGATAAGAAATGAAAAATTTCAACTATAACTATGTAATTCTTTTTTATGATGTTGGCGAAAAACGTGTAACGAAGGTATTCAAGATATGTAAGCAGTATCTGAAGCATTATCAAAAATCTGTTTTCAGGGGACATATCACTCCTGGAAACTTTTTGGAACTTAAGGGGAAACTCAAAAAAGTAATTGACCCGGAGTATGATTTTATAACATTTATTCAAACAATGAGTGAGTCATCTTTTCACGAAGAAAGTATGGGTAATACGGGCATTGATCCTGAGTCATTAATTATTTGATTTTTTCCATGTTAGACTATATAGTTAAAGGGTAAGAAGCTTGATACAAGAGTGATGAGGGACGATAGAGATAAATTTTGTTATAATTTAGTTCAGCATGGAAAAATGAGCGGTAAAAGCTGATGTAATACGGCTTAGCGGTTTTTACTAAACTGGAAAGCGGCCATTTTATCTTG # Right flank : TGTGCCAGAGATAATGTCTGTCTATGGTAATCTAATAGTAGGCCACCGTAGTCATTGAAAAACCGGCCACAATAGATTAACCTACTTGAGAGGAAATTCAACAGGTAGGGGCTGGGAGAGATGATCACAATGAACATCAAGCAACAAATTTTAATGATGCATATTCATGAAGGGAAATCGCGCCGGGAAATTGCGAAAATAACAGGGATCAATCGGGACACCGTAGGAAAGTACATTGGACAATATGAGGAAGGGAGACAGCAATTATTGTCGAGCGGGTCGGCAGATATCCAGGCACTAGTCGACACCCTCACTTCTGCCCCCAAGTATACTGTGGGCATTCGACCCAAAAGAAAAATGACTGACGAGGTTGTGAACAGGATCCAGTTCTATCTTGACGAGAATGAAACTAAGCGAAATCAGGGGCGGCACAAGCAGCAAAAAAAAGCCATTGATATCTTTGAAGCACTGGAAGCCGAGGGTACTCAACTAAGTTACAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGAACCTCCACATTGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 2494113-2498937 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022121.1 Dehalobacterium formicoaceticum strain DMC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2494113 30 100.0 36 .............................. ATCTTGAGTTGCTTTTTCTTCTTGTTTTTGAATAAA 2494179 30 100.0 34 .............................. AAATTTATCTGTTTGTATAAAACTTTTCCTCCAA 2494243 30 100.0 36 .............................. ACGTGTGTAACTGTTCTCTTGTCATGTGTCATTCCT 2494309 30 100.0 36 .............................. CAGGATATAAAAACCAGTTTAGATGGTGTTTACACG 2494375 30 100.0 37 .............................. AAAAACTGTACGTCATAGATATCCTCTCGTACAAGCA 2494442 30 100.0 35 .............................. GGTCCCGACAAAATAAAATTATGGGAGGGTTATAA 2494507 30 100.0 36 .............................. ATATGCAGTAAATATTGGATAACAGAGCAGGACTTT 2494573 30 100.0 35 .............................. AGCTAAGTGTAAGCAACTTAAACACCGAGAGGATG 2494638 30 100.0 36 .............................. GGAACAGATATCTATTTTAACCGCAGATAAAAGGTC 2494704 30 100.0 36 .............................. GTCCTTTGTCAGTTGCCCAATCAAGATAACTTGTTA 2494770 30 100.0 35 .............................. CTCACATAAGCATAAGTTTTTTGAAGATTATATGT 2494835 30 100.0 36 .............................. AGAGTTGCTTAATAGGATTGCTAGGTTAGGAAGATC 2494901 30 100.0 36 .............................. GCTAAAGATATGGGAAGATATGGCAATGCTGTTGTA 2494967 30 100.0 36 .............................. CAAATATATCTATTTTACTTAATGAAACAGAGGTGC 2495033 30 100.0 36 .............................. GACTCAGCAAAATCATTAGAGGAATCATTTTTTGAT 2495099 30 100.0 37 .............................. AGCCTTTCCGTTTCTTCTTTTTGCTCTGGCATACTTT 2495166 30 100.0 36 .............................. AAACATTAGGATATTTTACTAACATATCATCTAAGT 2495232 30 100.0 35 .............................. ATGTTACTATACCTAGTTTTCTCGCGGCCTCTGCA 2495297 30 100.0 35 .............................. TAGGCAAAAAACATCTGTTTTGGCTTTAAGTCTCG 2495362 30 100.0 36 .............................. GCAAGAGGATTGGCGGTAGGGATAAAAAATGTATTA 2495428 30 100.0 37 .............................. AAGTGATGGTTTAGCGGCACTAGATTTGAATAAAGCA 2495495 30 100.0 36 .............................. ACTTTTCGTCTGTCAAGCACTGGTACTGTTCCAGCC 2495561 30 100.0 36 .............................. TAATATCACATAACTGTATCGCATTTCCTCGCCTCT 2495627 30 100.0 35 .............................. TATGTTAGGCCATTGGTCATGGGGATAACCGCGTC 2495692 30 100.0 35 .............................. GTGCAGATTTTGGACGGGCTAAATGATGTAATTTG 2495757 30 100.0 35 .............................. GGAAGTTGGGTTATTCCAAAGACTACCAAGAAAAA 2495822 30 100.0 36 .............................. GGAGCTGAGGCGGGATTTGAAAGCCGATGGCCACGA 2495888 30 100.0 35 .............................. AATCATGGGATATATAGAGCATGCTACTATGGGTC 2495953 30 100.0 36 .............................. GGCGAAGAAGAAAAGACTCAATTTATTGACGAGGTA 2496019 30 100.0 36 .............................. AAACCTCGTCACCGACTATATGAAATTTTGGGATAT 2496085 30 100.0 35 .............................. GTTTCACCATTTCTTTCTTCATAAGAGTTACCGCT 2496150 30 100.0 36 .............................. TTGGCGGCCTTGGTAAGGTAGACAACCCAAGGATAT 2496216 30 100.0 35 .............................. ATAGGTATTGAGTGCATTGCTTGACCCGATCCTTC 2496281 30 100.0 35 .............................. ACGATTGTTGCATTGGGCAATAACCTTGCAACAAC 2496346 30 100.0 36 .............................. TAAAGTAAGTTTTGTCGGGGGTACTTATCCAGAAAT 2496412 30 100.0 35 .............................. AGGTTATATGCTCCACCACCACCACCTCCGGCTGC 2496477 30 100.0 36 .............................. ATATATCAGCACTTGGGTCTAAAGAAATTAAAAGAA 2496543 30 100.0 36 .............................. TAAGAAAAATATAAAAGAACGAGAATATTTTATTTC 2496609 30 100.0 35 .............................. CCGTTTCAGCATCGACCAAACTGGGGTTCATCGCC 2496674 30 100.0 35 .............................. TTTTGAGTTGCACGACGAAAAGATAAAGACTATCA 2496739 30 100.0 35 .............................. GAAGTTGAAGCCAAAATCATCTTGGAACGCATGAA 2496804 30 100.0 37 .............................. ATGAAAACCGCAATTTACATGGGGAAAGCCCCACCTT 2496871 30 100.0 34 .............................. CGGCGTTGGTGGTGAGTATGGAATAGCGCGTTAA 2496935 30 100.0 35 .............................. GGATTATGCAGTAGCATCCGGCATGGAGTATGAAT 2497000 30 100.0 35 .............................. AAGCCAATTGTCGTGCTCATAATCCTGTTAAATGT 2497065 30 100.0 36 .............................. TGGGATCGCCTCCGATAACACATGTCGCTGATCATC 2497131 30 100.0 35 .............................. AATGAAGTGGCTTATAAAGTGGTGACGGCGTCTTT 2497196 30 100.0 36 .............................. TGATCATAGTTGTGCATATATCCAACTATGCCCTTA 2497262 30 100.0 36 .............................. GCATAATCACTGCTCTCAACAATATTGACCTATTTT 2497328 30 100.0 35 .............................. AGAAGTTTCCCCATGGAAAGCAAAGCGGGTGCCAA 2497393 30 100.0 36 .............................. TCGCATTCCAAGTACTATCAAATACGCCGCTTCCGC 2497459 30 100.0 37 .............................. GCGATAAAAACAACAAAGATGATGAGCTGCATGCTTT 2497526 30 100.0 36 .............................. AGCCGATACACCCGATTAGTAATTTTCCCCTTCTCA 2497592 30 100.0 36 .............................. TGAATTAAAAAGCCTGGCTGATGAATTTAAAAAACA 2497658 30 100.0 35 .............................. GGACGATGGGCTTTATTTTTCGCGGTACATGGGAA 2497723 30 100.0 37 .............................. AAACTGTGGGCTGATTTATTGCTATCAGAGCCGCCGC 2497790 30 100.0 36 .............................. ATGCAGTTTTGCTTAATAAACTCATACGCCCTCCAC 2497856 30 100.0 37 .............................. GATTGCCAGGAGTGTGTTAAATTTGATTTGTGCGAAC 2497923 30 100.0 36 .............................. ATAATGGTGGGGTTTACACAATAAAGGTACGAACAA 2497989 30 100.0 35 .............................. AACAGTGGACTTTTACCGTCCTGCCCATAGACTCC 2498054 30 100.0 36 .............................. AATATAGCAGAATGAAACTAAAGGCTAACAATATAC 2498120 30 100.0 36 .............................. ATAAGTTTTTGTTTTGATCATACAGAAAGGAGGTTT 2498186 30 100.0 36 .............................. TACATAGAGGATGTTGGTTTTGTTAACCTTGTAAGC 2498252 30 100.0 35 .............................. GGACTACTGCCAGTTAGCGTGATACCGGAATCAGC 2498317 30 100.0 36 .............................. TTTTATCCTCCTTTTAGGCAGCCTGCCCGGACGAAC 2498383 30 100.0 36 .............................. TTTACTCACCTCCTTTCTTATATTTTTCAATGTGCT 2498449 30 100.0 35 .............................. TTTGTTTTATATGCTGTAACAAAGGCTCCAATAAG 2498514 30 100.0 36 .............................. GGGAATAACTGCAACAATAATGCAAGAGGAATATTT 2498580 30 100.0 36 .............................. CCAATGAACATATCTTTGAATCGATCGTTGAAAAAC 2498646 30 100.0 36 .............................. AGAAGATTTTTGGATAAGGTGAAAGAAGCAAAAACC 2498712 30 100.0 34 .............................. TTTTCAGCTATTCCTGCCGGGGCAATTGCATACC 2498776 30 100.0 35 .............................. TCCTTAAGGCCGTGTCGGTTCTTGGCGTCCCAGGC 2498841 30 100.0 37 .............................. AAATATCTTTTGTCAGGCCTGCTGCGTTGCGGGTATT 2498908 29 80.0 0 ..............C.T....G.-A....C | G [2498935] ========== ====== ====== ====== ============================== ===================================== ================== 74 30 99.7 36 GCGGAACCTCCACATTGGATGTATTGAAAT # Left flank : GGTTATTGCCGATGAAATGGGTTATATATCTTTTGATAAGGAAGGATCTGAATTATTGTTTACCCATTTGTCGCTGAGGGCTGGTCGCAAATCGACAATCATCACAACCAACTTATCCTTCGAACGATGGGGTGAAATTTTTCAGGATCCCGTGATGACGGCGGCCATGATTGACCGGTTGACGCATCAGTCATACATCGTCAACATGAATGGAAACTCGTACCGCATGAAAGAAACGAAGGAGTGGTTACAACAACAGCAACTGGCATGAAGAAAAAAACAATAACCCTGTATAAAGGTTTATCATGTTTTTGATAAACATTTATACAGGGTGTAACAAGCGATAGCGCGTTAGCATTCATCGTGAAACAATGCTCTTTGAAAACTAAATATGCTTATGAAACGACTAAATTTTTTTTTCTTAGTGGCCGAAAATTAAATGACTATATGGCCTAATTTTAAGTTGACAAATACAAATGTCATTTAATTCGCTTTTTAAA # Right flank : CGCGGTAGAGCGCATTCGGACCCTTACGGCAGGAAAGGGGGCGGATGCAGCGATTCCCTGCTGTCCGGACCCCCAGGCGGTGGCGGACAGCCTGGCCGTCCTGGGTAAGAAGGGACGATTTGGCTTCTTCAGCGGTTTGGTCATGGGAGAAGATGCGCCGCACATAGATTGGAATCTCATTCATTACAAAGAGCTTGCTGTGTATGGTGCCTATGGCTGCTCCTCAAATCATAACCGGACTGCTCTGGAACTGTTAAGCTCCGGCATGGTTCGGGTGAGTGATATGACGACACGGATTCTGCCCTTCGAAGAACTTGTTCAGGGCATTGAAATGGTGGCCCGCCGGGATGATACCAATCTAATCATCGACTTAACCATTTAGCTAATTTAACCAATTGGCAGGATGGCAAAATTAAATATAAACATAACAATAACTTAACAAACAAAAAATTATAAAACGAAAAAGATAAAACGAGGAGGAACTGACAATGAGTGTAATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGAACCTCCACATTGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 3406936-3404717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022121.1 Dehalobacterium formicoaceticum strain DMC chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 3406935 36 100.0 31 .................................... TAAATCGGGGTGGCTTGGTCTGGATCTGTCC 3406868 36 100.0 30 .................................... GCCCAATCAACCCAGCCTCCCTTATCCCCC 3406802 36 100.0 30 .................................... GCGAAACCTAGACCGAAACTAACTCCTTCC 3406736 36 100.0 30 .................................... GCGAAACCTAGACCGAAACTAACTCCTTCC 3406670 36 100.0 30 .................................... CCGGAAATCGCCAAGATTTTTCACCTCCAA 3406604 36 100.0 30 .................................... CCGGCCATGCGTGACGAGGATTATGAACGC 3406538 36 100.0 30 .................................... AAAAAGGGGTTGATTTGGTGATTAATCAAA 3406472 36 100.0 30 .................................... TCAGTGTTAAAAGACTATGCAACTGGAATA 3406406 36 100.0 30 .................................... GATACTGACATAATTACAGTCTATGATGCA 3406340 36 100.0 30 .................................... TATTCTAAACACACTAAATGTCGCCGGGTA 3406274 36 100.0 30 .................................... TTACTTGTATATTAGGTGTGAATGTCCTTA 3406208 36 100.0 30 .................................... ATGTAACAACCTTGCCCGGCCCGTCCACAG 3406142 36 100.0 30 .................................... CTTCTCAGTCTCGGCAATCTCCGGTTCCTC 3406076 36 100.0 30 .................................... CACAGTCATTTTCATCGCTCTCACAATCTG 3406010 36 100.0 30 .................................... GTAGTTGATGTATGCACGATGTACCCCAGG 3405944 36 100.0 30 .................................... AAAGGCAACACTGTGATGAGAATATTGTCG 3405878 36 100.0 30 .................................... GTTTGTAGATGGCATCAATATCAATGAGTA 3405812 36 100.0 30 .................................... TTTCTTGGCCAATGAGGGGCTAAGTATTGT 3405746 36 100.0 31 .................................... TATCGGCAGCAGGAAGTTACGCCAGGGAAGC 3405679 36 100.0 30 .................................... TCGTCACCGTTTCTATATTCAACCAGTGCA 3405613 36 100.0 30 .................................... CTAAAGGCCCATGCTGCCGTTGGCGTGGTT 3405547 36 100.0 30 .................................... AATAAATCAAGCGGCTCCTCCGGTAGTTCA 3405481 36 97.2 30 ............C....................... AACATTAGGGCTGATGTCCGGCACCTCATA 3405415 36 100.0 30 .................................... GGAGAGGACTACGATGCAAGGCTAGACGAT 3405349 36 100.0 30 .................................... CAGCGCGCCGATTCCAAGCACTTCGAGCGA 3405283 36 100.0 30 .................................... GTCTAGCACCGGCGGCAGGTCAAGTATTGA 3405217 36 100.0 30 .................................... TTGCAATGTTTAGCATCCCGTCAGTAATAC 3405151 36 100.0 32 .................................... AGAAACAAATGCTTTTTATGCGCAAATTGAAA 3405083 36 100.0 31 .................................... TATGAATTCAGCGAATAACAACTTGTTAAAA 3405016 36 100.0 30 .................................... TTGATGTATTCATCCATCTTGCACAGGTCA 3404950 36 100.0 30 .................................... GTAAAGATGAGGGAATAAAGCATAATCCCT 3404884 36 100.0 30 .................................... TCAAAAACGCTTCCAAAACGCCCTCACAGG 3404818 36 100.0 30 .................................... TAGGAAGGTTGATTTTTCATTACTAAAACC 3404752 36 88.9 0 ...............................T.TTA | ========== ====== ====== ====== ==================================== ================================ ================== 34 36 99.6 30 GTTTGAGAATGGTGTAATTTCATAGGGTAGCAAAAC # Left flank : GTGAATATTATGTGGATTCTACGGGCTTAATTAGTGAGATTATGCGATATCTTGAAAAAATACTGCAAGAAATACACTACCCTCTTGAGTATAATCAAGAAATGGATATCGGAGCAATATTTAAATTTGCCGATGTCAAAATAGGTACGGATTATGAAACGATTATTGAAAAAACAATAGACTACTTAACTTTATTGCAGGAATTTATTGGAATTAAATTATTTGTTTTTATAAATTTAAAGTGCTACTTATCAGACCAGGATTTAGAGCAGTTATATCAGTTTGTGATTTATAATAAGTATGATATTTTGCTTTTAGAAAATACAATGAGAGAAAAAAGATTCCAGCAGGAAAAAATCCGAATTATCGATGGGGATCTATGCGAAATATAAAGGTTATATTTGATATTATTGGTTTACGATGTTAAATTTATTGTATTGTAGGGAATAGCTATTCCAAGAAATTACGGTGTTGTGGTGGCACTTAATTCTCAATTTGAG # Right flank : TTTTTTAAATTACACGCACCGAAATCTTTCATTTTCAAGCAAATTAAAAGAAGGTACAGAATAAATTAATCTGATGCATTTTCCGACAGATTGTTTTACTCTATACCTTCTTGTGTTATCATAACAGTATTACTATATTAATGTAGCAGGAACCGCACCGACTAAAGAGGGATTCCTGCCACAAATACATAATTGTGGATAAATCCACACTACATATATATGATAACGTTATCTGTCAATTATTACAATCCTATTTCTCAAAAAACTTATGATGAAGTCATTTCAAATCTTCAGTTTCATCAGCTCGTATGCTCCTGTGGGCATTCCGGCTGTCTTACTATCCATGCTTATTATTACCGCCATGTTATGTCAGGAGATTCGAAAGAACGTCTTCGCATCTGCCGCGTAAAATGTGCTATCTGTGGTCATACACATGCATTGCTTTTATCTGTTCTCGTACCTTATTCGCAGATTCCTCTTTCAACTCATGTTGAGATTGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGGTGTAATTTCATAGGGTAGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 3569719-3563404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022121.1 Dehalobacterium formicoaceticum strain DMC chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3569718 30 100.0 36 .............................. AGTGAATAACGGAGCGTCTGAGCGGGTTCAACATAC 3569652 30 100.0 36 .............................. TAGAAAAAAACTATTGACAATTGCATAGTATATTGA 3569586 30 100.0 37 .............................. AAGGTGTTTTCTGTCACATCTACAATAATAAAATTAC 3569519 30 100.0 37 .............................. CGACGCCAGGACTTCTAAACGCAACTATTTATATGTT 3569452 30 100.0 34 .............................. CGGCTTTGTGTTTGCGTTCCGCTTGCGCTTGCCT 3569388 30 100.0 35 .............................. TTTATCCTCAATGGCTCTGATTGCGCGGTATTGTG 3569323 30 100.0 36 .............................. TAATGCCAAATTGTTTTTAGCCATAACTAAATCTCC 3569257 30 100.0 35 .............................. ATCTGGTCATGATAAACCCTCCTTTTTACCGTCAT 3569192 30 100.0 37 .............................. CGCACTAATCTCCAAGCGGATATACACCACCTAAAAA 3569125 30 100.0 36 .............................. TGTATGTAAACCATCCCCCCTGCATCCCTTGCGACG 3569059 30 100.0 35 .............................. AAGAACTGCACGAAAAAGGAAAGGACGGTTTTTCA 3568994 30 100.0 38 .............................. CGCTCCGGAAAACGGATACGTTTCATTAGTTGCCGATA 3568926 30 100.0 37 .............................. AATTCGTCAAAATTCTCTGGATTCATGACATACTTTC 3568859 30 100.0 35 .............................. ACATCTTATTCTCCCATAATTTCGTTCACAAATTT 3568794 30 100.0 35 .............................. TGATCTTATATTAGTGGCCTATGATTATTTATATA 3568729 30 100.0 37 .............................. CAAGCTGTCTAGACGGAATTTACACGGCGGATCAAGA 3568662 30 100.0 38 .............................. TGGAAATGGCTGTCCGAGCGACAGCGGGTACTCTCAAA 3568594 30 100.0 36 .............................. ATCCTGTGAGATCACTTCTCCGCCAATATCATAGTA 3568528 30 100.0 36 .............................. CTATCGGTGAAAGTAGTCTATGTATGTAAACCATCC 3568462 30 100.0 36 .............................. TCATTGACGGTATGAATGCTCAGGACTCAGAGTCAA 3568396 30 100.0 35 .............................. TGCGGAGAAAAGCATTGAGAATTCCGGAAAGTTCG 3568331 30 100.0 36 .............................. AATATAAACTGTCTCCATGTAATTCGTGCCTCCTAA 3568265 30 100.0 37 .............................. TGGTACCTGTAAAAGAGTGATAGTCTTCATACGTTTC 3568198 30 100.0 36 .............................. CGCGAAAAATCCCCTCTACCACTCCTGTATTGGCTC 3568132 30 100.0 36 .............................. GCAGGACGGATGCAGATAAGGGGGACGGAACAAAAA 3568066 30 100.0 36 .............................. CGCGAAAAATCCCCTCTACCACTCCTGTATTGGCTC 3568000 30 100.0 36 .............................. GTAGTCCATCCTGCTTGGGAAGTCCCTATCGTAAAC 3567934 30 100.0 36 .............................. AAGGCTACATTTAGTGCCGTTGTTGCGTCTGTTGGT 3567868 30 100.0 37 .............................. AAGGAATGGAAAGATAAAATGATGGAGGAAGTTGAGG 3567801 30 100.0 37 .............................. AATAACCATTTACTTATAAACTACTACATTACTAGGA 3567734 30 100.0 36 .............................. TCATCAAGAGAAAAGCACGATGGCTTCCCTATATTG 3567668 30 100.0 35 .............................. AGGCAAAAAAGCACTATGACCTCGGAGGAAACGTC 3567603 30 100.0 38 .............................. CTGAGACACTCCCAGAGTCTTGGCAATTGCCGAGACTC 3567535 30 100.0 37 .............................. CCCGTATAAACTCCCTCTAGACCGCCAGGAATGTCGG 3567468 30 100.0 35 .............................. GAATTTTGGAAATAGCCTGCTGGGATACTCCCAGT 3567403 30 100.0 35 .............................. GTAAATTGTAGCATACTTGATACTGTAGCTTTCCA 3567338 30 100.0 38 .............................. CATCATCACCAATCTCTTTGGCTACCCGCAGGGCCATG 3567270 30 100.0 35 .............................. GTGATATTAGAATAGGAGTCCTCATTTAAGGCCGT 3567205 30 100.0 35 .............................. GAAACCGCAACGGCCAGTTATAAGCTAAGAGACGG 3567140 30 100.0 35 .............................. CCCGCATAGACTCCCTCTAGACCGCTGGGAATATC 3567075 30 100.0 36 .............................. TCTTTTCTTTTCCGTTTTTCAGGACACGTGTTCCTA 3567009 30 100.0 37 .............................. AGCATAGAATCCTTCGATAACGAAGGATGAGAATGGA 3566942 30 100.0 35 .............................. TGTGATGCAGGAAGTGCCTTGGCACGATAACACTA 3566877 30 100.0 35 .............................. ACAAAAAATAAAAAGGAGTGTATTTAAAATGAAAT 3566812 30 100.0 36 .............................. ACCACCAGTGAATACATAAGAGAGAGAGTCTTAGAA 3566746 30 100.0 38 .............................. TAGAGATCACCCCCTCCCCCGCCCCGGCACCTTGGCGC 3566678 30 100.0 37 .............................. TGGGGGTATAGACCCAATCGTAGGGGGTGGGGTATAA 3566611 30 100.0 37 .............................. TCATCATAGATGATAGCGTCTATGATAGCTTGTAAAC 3566544 30 100.0 38 .............................. AAACGCATTGAAGCAGCATCTGGAAACGACACGATCCG 3566476 30 100.0 34 .............................. ACTTCTAGGCAGGAGCAAATCCTGCACTATAGGA 3566412 30 100.0 39 .............................. CCAAAAGATGTCACTTGAAGGCATGGATGATCAGGACAT 3566343 30 100.0 35 .............................. TATGTACCGTCCCCTACGATACGATTGATCATCCT 3566278 30 100.0 37 .............................. AGACAAATGCAAACCAAAGTTTTGGAAATTTTTCCTG 3566211 30 100.0 37 .............................. AGGTGAACTGCACGTCATCGGGTCTGCGACCATCGGA 3566144 30 100.0 36 .............................. TCTAGAGGTTAAATTTAATGATTCTACCAGACCCTC 3566078 30 100.0 37 .............................. CCGCCACAATCGTGGATTGTTACATTACGCAAGCCGC 3566011 30 100.0 35 .............................. CTACATTCTGGTAACCTGATCTTTATCCTGATTCG 3565946 30 100.0 36 .............................. TCTAGTGCTTCGACGATATTTTCGCCTCTGCATATA 3565880 30 100.0 35 .............................. CTACATTCTGGTAACCTGATCTTTATCCTGATTCG 3565815 30 100.0 36 .............................. CTTCTCCTCTGTCCACATTGCCCCTAGCAAATTCCA 3565749 30 100.0 35 .............................. GCGCGTTTGACGCGCTTGATCGCGTCTATATCCGA 3565684 30 100.0 38 .............................. GTACCTGGTCATAACACCTACTCATAACACCTACTCCC 3565616 30 100.0 36 .............................. CTAATATAATATCATAATTTTTATGATATTTCAAGC 3565550 30 100.0 37 .............................. ATAGCTAACGCACCTTGTAAAAACTTAGTACCTGGTC 3565483 30 100.0 37 .............................. ACTATTCTCATCCCTATAAGGGATTGACTCCCGTTTT 3565416 30 100.0 36 .............................. TAGATACCTGACTATCCCAGTCCACTGGGATTTCCC 3565350 30 100.0 35 .............................. TCTATAAAAAATCCAAATACTGAAGCAAATCTCAA 3565285 30 100.0 38 .............................. AATTTTCTGATTTTTTCAGGAAAGACTTCCAAAACTTT 3565217 30 100.0 35 .............................. GCATCCGGGCAATAAGGTTTCTAGTAGTAGATACA 3565152 30 100.0 38 .............................. ATTTTCGGATCGTGTCGTTTCCCGATGTGCCATAAACT 3565084 30 100.0 35 .............................. CTATCTGAGGAGAATTATAATACTTAACTTCATCT 3565019 30 100.0 36 .............................. TCTATCCCGGCCAACACTATCCGCGAAGCATCGATA 3564953 30 100.0 35 .............................. GCCTGCAGTAGATAAGGATCACCTCCTCTCATAAA 3564888 30 100.0 38 .............................. TCACCTCCGCATACTTTTGATTTCGCTCAATCATATGC 3564820 30 100.0 36 .............................. AAGCCGTGCCGATCTGTAAAAAAGCTTCTGGGTTCA 3564754 30 100.0 37 .............................. AGCGCGGGGCTGCCGGAGACGAAGGGGAAGGCTGCTG 3564687 30 100.0 37 .............................. TGCTGTCTGCGCTCCGCCTCAAAACCTTTGTCATTTC 3564620 30 100.0 39 .............................. TATCCCAGGAGGAATATACATGGGGTATACGGGCAACGG 3564551 30 100.0 38 .............................. TCAAAGGTAACTATGAAGGTGGAGAAGCAATAGGCCTT 3564483 30 100.0 36 .............................. CTGGAAAGATAGGGGCAGGCCAATCCTACTGCGCGT 3564417 30 100.0 35 .............................. CGATTTCGCTTGTAAAAGTATTGAGCCAGCCTTTG 3564352 30 100.0 37 .............................. ATCCACTTATTTTTCATTATTGAATACCTCCAAATGC 3564285 30 100.0 35 .............................. TCTTAGGCATTGTCATCATCGACCAGGCGAATATC 3564220 30 100.0 35 .............................. AAGCACCTGCATTGTACTTATTGAGCTTGTTGTAT 3564155 30 100.0 35 .............................. TCTTAGGCATTGTCATCATCGACCAGGCGAATATC 3564090 30 100.0 39 .............................. TCTCATCATACTCTTCGACAACGAGGTCAAGGAACTCCT 3564021 30 100.0 37 .............................. CATGATTAACCATGTCGTGCAGAGCAGTTTGCCTTAC 3563954 30 100.0 35 .............................. TTGTATTGGTGAGTAAATCAAGTTGATAGTCAAAC 3563889 30 100.0 34 .............................. TCCACTATACGGATAGCCCATACTTCCCCGCCTC 3563825 30 100.0 35 .............................. CCTAATCAGGAATATATAAAAGTTGGACACCAAAA 3563760 30 100.0 35 .............................. CTGCCAGTCCAAACAGAACCAGTTCTTGTTATATC 3563695 30 100.0 36 .............................. TATCATAAAACTAAGCGAAATAGATAATAAAGATGT 3563629 30 100.0 36 .............................. TTGGGACTGCTGGGACGCAAACCACTTCCCGTGCGG 3563563 30 100.0 35 .............................. CCAAAATGCAGGAACTAGGGTATGCCGCTCTAGCA 3563498 30 100.0 35 .............................. AATGAAAAGGAGAATGATTATGAGTAAAAGATCTA 3563433 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 96 30 100.0 36 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : GTTCGAAGAACGGTACTGTAACTTAGTTGAGTACCCTCGGCTTCCAGTGCTTCAAAGATATCAATGGCTTTTTTTTGCTGCTTGTGCCGCCCCTGATTTCGCTTAGTTTCATTCTCGTCAAGATAGAACTGGATCCTGTTCACAACCTCGTCAGTCATTTTTCTTTTGGGTCGAATGCCCACAGTATACTTGGGGGCAGAAGTGAGGGTGTCGACTAGTGCCTGGATATCTGCCGACCCGCTCGACAATAATTGCTGTCTCCCTTCCTCATATTGTCCAATGTACTTTCCTACGGTGTCCCGATTGATCCCTGTTATTTTCGCAATTTCCCGGCGCGATTTCCCTTCATGAATATGCATCATTAAAATTTGTTGCTTGATGTTCATTGTGATCATCTCTCCCAGCCCCTACCTGTTGAATTTCCTCTCAAGTAGGTTAATCTATTGTGGCCGGTTTTTCAATGACTACGGTGGCCTACTATTAGATTACCATAGACACAA # Right flank : TCGGATTGAGAAAAGCAATCTTGGCCAACTCCTCGATAATTCGATCGGCGTTGACTCCGGTTCGCCTTGACCTTTCAGCCAGAGCTTTATCAATAGCATTTTTAATTTCAGGTTTTTTCAGGTTTTCATCGCCAATAGAATAAGCTGTCTGTGGTGAATACCCTGCCCGGATTGCTGCCTGGGTGGCATTCAGATCAATCAGATACTCCTCTACAAAACGTTTTTGCTTTTTTGTTAAGGCCATCCTGCCACACCACCTCACTAATAATTATTAGCACCCCGCCAAGGAGGGAGACGGGGTGCTCTGCCGGGTTGCGTTATAAGCCCGGGTCCGAATAGAAGAAAAAGAGCCCGAAGGCTCTTGTTATTTATATACTGCTAATATTTATAATTTTATTCCGGTAAATTATCAATTGCATATTGAGCTTGACTGTCAGTGTAGTTATCTCCATGTTCAGATGTTAGTTGATCAAAAAGTTCTTGGTCTGACATCGGCATGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 5 3576042-3572433 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022121.1 Dehalobacterium formicoaceticum strain DMC chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3576041 30 100.0 36 .............................. AAGTCGGTTCAAAAGTTTCCTTTACTGGAAATGTTT 3575975 30 100.0 36 .............................. TTGGATCTAAAACCCCCATCCCCGCATCATTTAGTC 3575909 30 100.0 37 .............................. AGAATTACAAGAGCCTGTCCGACGCCGCCAGAGAAAA 3575842 30 100.0 39 .............................. TACAGGGAGTGTTTCGTATTTTGTGTAATTAGTTATTTC 3575773 30 100.0 37 .............................. TTTCAGAGGCTAAATACAGAAGTTCGATTCCTTGCTG 3575706 30 100.0 36 .............................. GTCAGCACATGAAACTTGGATATGATTTTATTCTAG 3575640 30 100.0 36 .............................. CTTCCCAATTCGGCCATTCTCTCTACCGCTGGGCCG 3575574 30 100.0 38 .............................. ACAAAATCGACTGGTCCCGATTTGGGTGTTAAGTATGA 3575506 30 100.0 36 .............................. ACGGCTGTTATGTCCAACTATGACACAGACGATATG 3575440 30 100.0 37 .............................. CTTGCTCACGTCCTCCACCACCTTTTTTCCCTTACAC 3575373 30 100.0 36 .............................. GCCTCATATGGAGTATCTATCTGGACGTAAGACAAC 3575307 30 100.0 36 .............................. TCGAAACTTTTGTGTCCTAGTTCCATTTAAAACACC 3575241 30 100.0 38 .............................. ACAGTCGTGCCATAAAAGTTCTGCGGATCATTGGTATC 3575173 30 100.0 35 .............................. CAATACGCCTGTGGGTATAAACTGGCGGAGAAAAA 3575108 30 100.0 36 .............................. ACATTCCTGATGCTGAACCTTTTCAAATTATGAAAC 3575042 30 100.0 36 .............................. CCGGAGGACTCATCATCATAGCCCATGCTGTCCAAA 3574976 30 100.0 37 .............................. CATATACTTTCTATATAATTCCCGTCTGCGTTCCCCG 3574909 30 100.0 36 .............................. GCAGGAGATAGCACCATATCAACCGCCTGTTCCTCC 3574843 30 100.0 35 .............................. CAAAAACCCTTGCAAATAGCTGATGCTACTTTCTC 3574778 30 100.0 36 .............................. TTCATACTGTGCTTGCGTAATCCTACCCATCTCAAC 3574712 30 100.0 38 .............................. AAACCGTAATCTTAACAATCAAAAGAGTATGACTAATC 3574644 30 100.0 36 .............................. TCGCTCCAACTCAATCTTATCAAGCCATCGTTCATC 3574578 30 100.0 36 .............................. CATAACTTTCGGATCGTTCGCATCAGGCGGCATATT 3574512 30 100.0 36 .............................. GGACAAGTGTATCGCCTACTGCACCAACAGTATCAG 3574446 30 100.0 36 .............................. TATCTCCCTCCATTGCCCTGTAATATATTTATATAC 3574380 30 100.0 37 .............................. ACTGCAGCAGCTGCTCTATATTTTCTTTTTGTTTAGT 3574313 30 100.0 35 .............................. CTCTAGTATCTCATTTAATTTATTTATGGCATCTT 3574248 30 100.0 37 .............................. TTGATACGGTGCGCCCAGTTTTGGCCAAGCATGGCCT 3574181 30 100.0 36 .............................. TATTTCCGATCAACTCAAAACCCTTAGTGGTTCTGC 3574115 30 100.0 36 .............................. AACTCATTAAGGGGCATCGTCTCCCCGGTAAAACTG 3574049 30 100.0 37 .............................. TACCTTTTTCCTGAATGATTTTTTCTTGCTTTCTGCT 3573982 30 100.0 38 .............................. GCATATCCGGTAAGACGCAGCCTGTCAGGGAAATGTAC 3573914 30 100.0 39 .............................. TTATATATCTATGATGGGGCAGCGGCAGGAAGTATCCGG 3573845 30 100.0 36 .............................. CGACAATCTCCGTATCGTCAATCAGCGGCTTTCCAA 3573779 30 100.0 35 .............................. CATAGTTACATATGCCGCATTTCACTTCTTTCGTC 3573714 30 100.0 35 .............................. ATATCTAATACCGCTAAAGGACCAGCTTCACTTGC 3573649 30 100.0 36 .............................. TAAAAGGAAAGCGCGGCGTTTCATCAGGATCAAAAT 3573583 30 100.0 37 .............................. AATATTTGGGACGAGCATGATATATATAGCCGTAAAC 3573516 30 100.0 37 .............................. AGATATGCCGTATCCGGCATCACCGGGAGAAAAGCTG 3573449 30 100.0 38 .............................. CTGGATAGAATAGACGAAGATATGCTTGCAACCTACTG 3573381 30 100.0 37 .............................. ATATCTCTCATGCCGTTATCACTCTCCCCTCAGCTAC 3573314 30 100.0 35 .............................. GGCCCAACATGATTTTTTTGTTGGGCATTTGTTGG 3573249 30 100.0 36 .............................. GCCGAAATCACATCCACGGCAAAGATATTAGGCCTG 3573183 30 100.0 35 .............................. GCTCATCGGCAAGATAATATAATTTGCGTCTCGTC 3573118 30 100.0 35 .............................. CTCTTTCTCCCCATAGGGGATTGGTAGCCCCTTGC 3573053 30 100.0 35 .............................. TATGCTGCCGACTATGAGACTTACCATGGCACGGA 3572988 30 100.0 36 .............................. TGACGCTGGCGGAGAAGTTCGTTGCGGTGATCCGGC 3572922 30 100.0 36 .............................. ACGGTATGAACGCGCAAGACACGGAATCACGTATTC 3572856 30 100.0 34 .............................. GATTGAATTTGCGCCAGCGTTTTTGAGATTGCCG 3572792 30 100.0 36 .............................. CTAAACTTCACCTTCATGCCGCGGACGGATTGTCCG 3572726 30 100.0 36 .............................. TCTGTATTCTGCATTGGTAAAGTATTTAATATCTGC 3572660 30 100.0 35 .............................. CGCTGTGTCGGGGACAATGCCGCCGATATGGTATT 3572595 30 100.0 37 .............................. TGTACATGGAATCCATATGTTTGATGACGAATTTTAC 3572528 30 100.0 36 .............................. TTCAAAAAATGGCAGCACTCGTCACTTGAGGTCTAG 3572462 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 55 30 100.0 36 GTTTTTAGCCTACCTATAAGGGATTGAAAC # Left flank : ATCCGGGAAATAGTTCTCAAAGCGGATCGTTACTATTGCCGGGCAGGCGGGTTTATGTATAAGTATAAAGGGCGGCGAACCTTTGAAAAGTCGATAGATTTTCTTTATGAAAAGGATGGGAAATCCATTGCTTTTATTCCTAAAAAATGTGAAGACGATTCACCCCTGGATCTCAGTTTAGCTCATTTTGGGGAGGATTTGATATGCCTGATTTAATCCCCTTTGAGCAAGATAAATTTTTGAGAAAAAAGTATCTTAGAGTATAGTTTAAAAGGTTTTAGTGGTATAATTAGTTGTCAAGAGGCTAACTCTTTTTTAACAATTCCTAAAAGTTTGTGTTTAATTGAGTTATTTTAAACTGTCGTCGATGTGCAATAAGGTAAAAATGTCTGGAGATCGACGACAGAAGATATGGCTTAGTAAGCGGGATGTAGGAAAAATACAATTTATTGGGATTAGAATGTCTAATCATAAATACTGATTTAATGCGGGTAAAATGG # Right flank : CACGTTTTATTTCGTCGATGTTTTTCTTAAGTGCAAGTTTGTATTTGTCAACTTAAAATTAGGCCATATAGTCATTTAATTTTCGGCCACTAAGAAAAAAAAATTTAGTCGTTTCATAAGCATATTTAGTTTTCAAAGAGCATTGTTTCACGATGAATGCTAACGCGCTATCGCTTGTTACATCCTGTATAAATGTTTATCAAAAACATGATAAACCTTTATACAGGGTTATTGTTTTTTTCTTCATGCCAGTTGCTGTTGTTGTAACCACTCCTTCGTTTCTTTCATGCGGTACGAGTTTCCATTCATGTTGACGATGTATGACTGATGCGTCAACCGGTCAATCATGGCCGCCGTCATCACGGGATCCTGAAAAATTTCACCCCATCGTTCGAAGGATAAGTTGGTTGTGATGATTGTCGATTTGCGACCAGCCCTCAGCGACAAATGGGTAAACAATAATTCAGATCCTTCCTTATCAAAAGATATATAACCCATTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //