Array 1 1580333-1579383 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJMWP010000001.1 Mycobacterium riyadhense isolate MR-246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================================= ================== 1580332 29 89.7 46 .....A......T.....C.......... CCAGCGGCGGCAGCGGCGGCGCCGGGGGCAGCGGTGGATCGCTCTA 1580257 29 89.7 43 ............G.....C.......C.. GTGCCGGCGGCATCGCCGGCAACGGCGGACCTGCTGGGCTGAT 1580185 29 89.7 46 ...............G..C....T..... CCGGACACGGCGTCGGTGGTGCGGGCGGTCAGGGTGGATTGCTCTA 1580110 29 100.0 43 ............................. GCGTTGGCGGCATCGGCGGTCAGGGCGGGGCGGCCGGGCTGAT 1580038 29 89.7 46 ............C.....C..T....... CAGGAAACGGCGACGGCGGTGTCGGGGGCCAGGGTGGATTGCTCTA 1579963 29 100.0 43 ............................. GCGTTGGCGGCATCGGCGGTCAGGGCGGGGCGGCCGGGCTGAT 1579891 29 93.1 46 ............C.....C.......... CAGGAAACGGCGACGGCGGCGACGGCGGCCTCGGCGGATGGCTCTA 1579816 29 100.0 43 ............................. GTGCAGGCGGGACCGCAGGTCAGGGCGGGGCGGCCGGGCTGAT 1579744 29 79.3 241 ...............A..C..A.TG...A GCGGCGGCGGCGACGGCGGCGACGGCGGCAGCGCCGGACTGCTGTACGGCCATGGCGGGGCCGGCGGCAATGGCGGGTCCGCCGCTATCGCCGGCCAAGCCGGCGGGGCCGGCGGGGGCGGCGGGTCGGCGTCGTTGTTTGGTCAGGGCGGTCACGGCGGGGCCGGCGGGACCGGGGCGGCCGGTCAGGCCGGCGGGCGCGGCGGTTACGGCGGTGCCGGTGGGTGGCTCGGCGGCAATGG 1579474 29 72.4 34 ...G.T......T..T..C...GTG.... GGGCCGGCCTCGAAGGCCTCGCCGCCGGAACCGG Deletion [1579412] 1579411 29 69.0 0 T..T.A......CT....C...GC....C | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================================= ================== 11 29 88.4 63 CGGCACCGGCGGAGCCGGGGGCAACGGCG # Left flank : TCGTCGTTTGTGATCGCGACGCCCGGATTCTTGATGGCGGCCACGCAGGACTTGACCACGATTGAGCAGGCGGTTGGGGCCGCCAATGCGACGGCGGCCGGCTCGACGACACGGGTGCTGGCCGCCGCCGAAGATGAGGTGTCGGCAGCGATCGCAAGGTTGTTTGGCGCCTACGGCTACGAATATCAGGCGCTGAGCGTGCAGGCGGCGGTGTTTCACGCCCAGTTTGTGCAGGCGCTGGATGCCGGTGCTCGGGCGTATGCGGCCATGGAGGCCGCCGCCGCCGCGCAGTTGCAGACCCTGGGGCAGGACGCGCTTGGCCTGATCAACGCCAACACCCAGGCGGTGCTGGGCCGCCCGTTGATCGGCAACGGCGCTGACGGGACGGCCGCCCGCCCCGACGGTGGGGCCGGCGGGCTGCTCTACGGCAACGGCGGCAACGGCTATTCCCCAGCGGTAGCCGGCGGTTCCGGTGGTAGGGGTGGGGCGGCCGGGCTCGT # Right flank : GGGCCCTGGTGGGCTGGTCAGGCGGGGCAGGTGGGGCTGGAGGCGCCGGCGGCGCGGGTGCTGACGGGGTCGCGGGTGCTCCCAATACGAGCGGTGTAGGCGCCGCGGGCGGCACCGGTGGCAATGGCGGCATCGGCGGCGTGGGTGGTGCATCCAGTGCGCTGCTGTTCGGTTCCGGTGGTGTCGGCGGTGTCGGCGGTGCCGGCGGGGTAGGCGGCTCGGGCGGCAACGGTCTTACCCAGGTCGGTCTCAATGGCGGCACCGGCGGCACGGGCGGGACGGGGGGTAATGCCGGGGCGGGCGGGGCTGGCGGGGCCGGAGGATTTTTCGGGACATCCGGGGATACGGGCGCCGCGGGCACCGGTGGTAGCGGCGGCGCCGGGGGCAATGGCGGCGACGCCGCGGGAGTGGGCCCGGGCGGCGCCGGTCTACGCGGCGGCGACGGCGGCCAAGGCGGTCAGGGCGGTAGCACGGGCCTCGGAGGCGTCAACGGTAACGGC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCACCGGCGGAGCCGGGGGCAACGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 4235978-4227944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJMWP010000001.1 Mycobacterium riyadhense isolate MR-246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 4235977 36 100.0 36 .................................... GGGTAACGGCCCCGATCTTCGTCTGGCGTGAGCACG 4235905 36 100.0 35 .................................... GGCGCTTGAGCTGCTGAAATGATGGGTCCTACCGC 4235834 36 100.0 35 .................................... ATCACCAGCGCCGCCGCAGACTTGGCGCGCATCGG 4235763 36 100.0 38 .................................... GAGCGGCATCTGGCACACACCTATTGGGACGAATGCCG 4235689 36 100.0 36 .................................... CCTTAGATGGGGTTGTGCTGGCGTTGATGACCGCAG 4235617 36 100.0 36 .................................... CAGTCATTCTTCGGCATCGTCCCACCACAAGGCCCC 4235545 36 100.0 36 .................................... GGCATGCTCATCCACCCCTGTGTCCAGGGCGTTGAT 4235473 36 100.0 36 .................................... TGCAGCGACATCATCGCTATGTGTTGTGCTGGCCAT 4235401 36 100.0 36 .................................... TAGCGCTGATGGCCGCGGCTTCCGCCCAGCAACCAT 4235329 36 100.0 35 .................................... GTCAACCCGGTCACGATTCCGGTCGGCATCCCCGA 4235258 36 100.0 37 .................................... AGCGACGACGACAACCCGTTCGCGGCCGGATAGCCTC 4235185 36 100.0 36 .................................... GGATGTGCCGGGGAGTCTTCGGTGTTCATTGCGTTG 4235113 36 100.0 36 .................................... CGAGTATCGCGTTCTCATGCTCCAATTCCTGTACAG 4235041 36 100.0 36 .................................... CATCACACCGCGTGCAGCGGCCATCGCCTGATCCGG 4234969 36 97.2 37 ...................A................ CAAACCTGCTGGTCAGAACCGGCTGCAACCTGCGAAT 4234896 36 100.0 35 .................................... CATGACCGGTCGTCGTTGCGTCCCAAGGCAACTGC 4234825 36 100.0 36 .................................... CCGTTCAAGAAGAACATCTCCGCGCAGGCCGTTCTT 4234753 36 100.0 36 .................................... TCCAATACAACATGACACCGCCGTCACCGCATGTCG 4234681 36 100.0 36 .................................... GGCGTGTACATTGTCGCGCATGAGGCCGGGGTGCCG 4234609 36 100.0 37 .................................... ATGACCGGGCGACCGCAGATAATGAGCCAGCGCCGGA 4234536 36 100.0 35 .................................... CCCAAAGGGGGTGTCGGACTCGTTATCAAACCATT 4234465 36 100.0 35 .................................... GGGCAAGGTGACTTTTGCATTCAACAAGACCGCGA 4234394 36 100.0 36 .................................... AGAGACTTCGCGCCGTCACTCGGCCGACCGTTGTAC 4234322 36 100.0 36 .................................... GTCGAACACCACGTAGCAGCCCGGCCGCAGCATCGG 4234250 36 100.0 36 .................................... AAACTCGGGAAGATGCATCAGACGATGGTGCGGAAG 4234178 36 100.0 36 .................................... CAGATCACGATCGAGCTGCGTTCACCCAGCCAGCGC 4234106 36 100.0 37 .................................... GTCCATCGCGGCGGGGGGTACGACCCCCGCGTCCCGA 4234033 36 100.0 36 .................................... AAAAGGTACGCACTATCGGCCACCCTGGGCATCGCC 4233961 36 100.0 35 .................................... GCTATCCCTGGTGCACCCGGTGTAGGTGTTCCCGG 4233890 36 97.2 35 ...................................T TCCAGTACAGCGATGAATGCGCGGTCGTCAACCTC 4233819 36 100.0 36 .................................... CGGCGATGGTGAGCTGTCCGCGCTCGTCGACAACGC 4233747 36 100.0 37 .................................... AGGCATCCGCCTCTACCGCGTCCCCCAGGGCACGCGG 4233674 36 100.0 36 .................................... CGGCGTGGCGATCTGACACCCCACTCGACGCCCCGC 4233602 36 100.0 36 .................................... TTGGATACGCCCGGGTAACGGACAGCAATCCTTGCT 4233530 36 100.0 35 .................................... ATAGTCACTTACCAGAAGGATCGCGGCAAGCAATG 4233459 36 100.0 36 .................................... GGTGTTCTTCCCGCGGGGCCGACTCGGCCGCTTAGC 4233387 36 100.0 37 .................................... CGGCGCAGGGAGCGGAACGACTCGAAAAGTCGCTGAG 4233314 36 100.0 37 .................................... CATAAGGTTGGTTGCACGACCCCTAGCGCCTGTACAA 4233241 36 100.0 35 .................................... CGGACATCTCCCAACACCTCTCGGGCGGTCTTCCG 4233170 36 100.0 37 .................................... CAGGACGGAGACAGCGGGCCCCATCGCTGTTCCGCGT 4233097 36 100.0 36 .................................... ATGGGACTATCTACTTAGGAGGCGCTGGCGACATCG 4233025 36 100.0 35 .................................... GACCGTAGCGGGACGGACATGACGGCGGTGCGGTG 4232954 36 100.0 37 .................................... GGGTGGGGCGCCGGTGCGTTGTGCGCCGTCGAGGGCG 4232881 36 100.0 36 .................................... CTTCATCTGCCACGAGACCGGGTTCAGTCGGCGCCG 4232809 36 100.0 35 .................................... AAGTCGGCGGCCTTGTCGGTAGCGAAGAATTCCGC 4232738 36 100.0 36 .................................... AGCGTCATGAGTGAGCCGCAGCGCGCTCGCAAGCTC 4232666 36 100.0 36 .................................... TCAGATAGCGGAGTCGTCTCGGATCAGTCGAAGAAC 4232594 36 100.0 36 .................................... GAGATCAGGGAGAGCTGGCCGCGGCGCTCGTTGCCC 4232522 36 100.0 36 .................................... GTTATATCAGCCATCACATATCCTCCACATTCAAAT 4232450 36 100.0 36 .................................... GTGTTGTTGGCGTCTCGCCACATCAGCTCTTGCCGG 4232378 36 100.0 35 .................................... GGGTTGGCGTCGTACCTGCACAATCGTCGTGTCTG 4232307 36 100.0 36 .................................... CTTGGTCATATTGGTCTGTTCATTCGCGGTGACCGG 4232235 36 100.0 37 .................................... GTTTGGTTTAGGCGATGGTAATGGTGGGTTAGTTGTC 4232162 36 100.0 36 .................................... CACTGTTGACGAGCTGTACAAACTGGCCGGACTCTT 4232090 36 100.0 37 .................................... ATCAACAACGCGCTATCGCTGAACCCCGACGTGCGGG 4232017 36 100.0 36 .................................... GCGAGGAACGCCTGGATTGCCTCGTGGTCGAGGGCT 4231945 36 100.0 36 .................................... GATAGATCCGGCCGCGAACTCGGTTCATACGCTGAT 4231873 36 100.0 36 .................................... GACCAAGCTCAAGGAGCTGATGCTCAACGCCTTCAG 4231801 36 100.0 36 .................................... ACCGAAATGCGCGGGTGAGGCGTCGTCCGCGGTCTT 4231729 36 100.0 35 .................................... GAATACCATAAAGATTTGTCTGCAGCACATGCTAA 4231658 36 100.0 36 .................................... ACCAACCGCAACGCCGAAGACATGTACAAGGAATGC 4231586 36 100.0 36 .................................... GTGGAGATCAGCTCCTATCCGTGGCAACGCCGGGTT 4231514 36 100.0 38 .................................... GTGAAGCTCGGCATCGGTATTGCGCCGGGCTGGCAGAG 4231440 36 100.0 36 .................................... GCCGAACGCATGATGATCGCTATACCCAAGGCGATC 4231368 36 100.0 39 .................................... CAGCTTGTACGGCTACATCGACGCAGCACTTGAGGGCTG 4231293 36 100.0 35 .................................... CTTATGGTGGTCGTGATGGATTGCGGCGCAAACAT 4231222 36 100.0 38 .................................... GGCTTCAATCCGCCAAAGCAGTATTCGGCCACCTACAC 4231148 36 100.0 36 .................................... GGACACGTTGCCGCTGTCAACGACGGAACCCATCGC 4231076 36 100.0 38 .................................... AGAAACCTGCGCCGCGCCATCGACACCTCCGTATACGC 4231002 36 100.0 35 .................................... AGGATCATTTCGGGCTTGCCGGTGTCATTGACCGG 4230931 36 100.0 38 .................................... CTGGCAGGGCCGCTGAGCAGACTCCTGGGCGGTCTCCT 4230857 36 100.0 37 .................................... AAGTTCGCCAACGCCCCATTTGGTCTCTCCCGTCATC 4230784 36 100.0 37 .................................... ATCGTGCTCCTGGTGCAGGGGTTCTTGACGGCGGGTC 4230711 36 100.0 35 .................................... CCGCAGTGAGCGCACTGACGCGCGGCCATCAGTGT 4230640 36 100.0 35 .................................... AGGAGCGATCTTCACGGATCACTTGGCCTGAACCT 4230569 36 100.0 36 .................................... GTCGCGAGTCTGGTACCCCTGGGGGGTTTGATTTTT 4230497 36 100.0 35 .................................... AGGATCGCGGCGTTACGGGTGTCCGCCTTGGCCAT 4230426 36 100.0 36 .................................... ATTTCTGCGCGTCGGGTCGCGCACCAGCGCAGGATC 4230354 36 97.2 36 ....................T............... AATATGCCGATTAAGATGACCAAGCACCTCCCGATC 4230282 36 100.0 35 .................................... ATCTGTATCGATGAGCCCATACGTGGACGGTGGAG 4230211 36 100.0 37 .................................... AACATCGGTGTGCGCCATGGCGGGCCGGGCGGTGGGC 4230138 36 100.0 35 .................................... AATCACTGCGGTCGTCTTCAACGACGGCGGCTTTA 4230067 36 100.0 36 .................................... ATGGACTCGATGCGCACCGGCATTGATTTCCAACGC 4229995 36 100.0 33 .................................... CTGATGTCGCTGACAGGGTGCATGTGGTTGCAC 4229926 36 100.0 35 .................................... TAAAAACGAATTTACTACAATTTCTGCCGGTCCCT 4229855 36 100.0 37 .................................... AATAACATGCAATGCCCAGTTTGTGTTGCCGTGCCAA 4229782 36 100.0 36 .................................... AATCAACCCGGCTAAAGCCAGTACGTCGGGGTGATG 4229710 36 100.0 37 .................................... CGATTTTCCGACCTGCAGTGCTACCCTTGGAAACCAT 4229637 36 100.0 36 .................................... TTCCCTACTCCTGTGGCGTTCCAGTAATGAGTGCGA 4229565 36 100.0 37 .................................... AAGGGGCCGCTGGGGCCATCGGATCTATCGCCGCCAT 4229492 36 100.0 37 .................................... CGGAGTTATGGGCGGAGCGGACGCAACGGCGGCCCGT 4229419 36 100.0 35 .................................... TTAATCATAATCATGATTAATTCTATTTGGTATCT 4229348 35 97.2 36 .................-.................. GTACACCCCGAAATTGGATTGCACGTTGAATCGCAC 4229277 36 100.0 37 .................................... AACACCACCGGTGCGGATGCCCGCCAGGACTCCGAGA 4229204 36 100.0 36 .................................... CTGCTCACGCACGCCAAAGGCCGCGCACACGACGAA 4229132 36 100.0 35 .................................... CCAAATTGGAAATTGGTAAGATCGTCGACACCCTG 4229061 36 100.0 36 .................................... ACGTGAAGGCGGGGAGGCGGACGCGGACGTTGTGAT 4228989 36 100.0 36 .................................... AGCGATCTCGTGCTGCGTCCTCCCCAGTGAGGCGGC 4228917 36 100.0 37 .................................... TCGAAGAACCATTTTGCAACCTGTTCACGGGTGAATC 4228844 36 100.0 36 .................................... ACAGCGGGTACACCGTATCCACTTCATTGAGGGTTC 4228772 36 100.0 37 .................................... GGATTCGTTGCCGCGCATGGCCAACGCACTGAAGAGT 4228699 36 100.0 34 .................................... AGAATGTGGCAGGCTGGTCGGAGCGCGTTGGCAA 4228629 36 97.2 35 ..................C................. CGCCGTCCGTTCCGCCGTCGATTCCGCCGTCCGTT 4228558 36 100.0 38 .................................... CGCGACACCTGCACCTGCCCGGACCCCTGGTGTCCCGT 4228484 36 100.0 38 .................................... GGATTCGACGCCGGCAGTGGCCGGCCGGGTGCGGCGAT 4228410 36 100.0 35 .................................... TTCGTTGGGGATGTCGATGATGATGTCGTCACCGT 4228339 36 100.0 38 .................................... GAGCGGCCCGCCGCGCTCTACCGGTACCTGATCAGCAA 4228265 36 100.0 36 .................................... ATGTTTGCCGTCGACGGTGTCGCTGTTGCGGCAGTC 4228193 36 100.0 35 .................................... GAGGAGCATGGTGGCGAGCTTTTGCTGGGCGGCGT 4228122 36 97.2 37 .........................G.......... CAGTCGCCCGGACAGTTTCACTTCGCCGCGCAGCAGC 4228049 35 91.7 35 ...................T.........C-..... TCGCTGGTGTGGATGTACAAGTGACGGTTGTCAGC 4227979 36 83.3 0 .........A.....A...TG...........TC.. | ========== ====== ====== ====== ==================================== ======================================= ================== 112 36 99.6 36 GTTATTCCGGTCATTTTGGCCGGACACCATTGAGGC # Left flank : CTCGTCGGTGAGCTGCCTGAGTATGTCCCAATGGTGACGAGATGACGCGACGTCGGTACTTGCTGGCATACGACATCGCCGATCCCAAACGACTGCGACGAGTGTGCAACCTGATGGAGGACCACGGTGAGCGACTGCAATATTCGGTATTTCTATGCGACCTCAGCGTTGCGGAGCTATCGGAACTTGAAGCCGCCGTGACCGCTGTGATGCATCTCGTCCAAGACAGCGTCGTCCGAATCGACCTAGGCCCCACGTTTTCAGCAGCTACTATACGACAGATCGGTCGTCGCCGCTGCCTTCCTACGGACGGGCCGCAGATCGTATGAAGCTGCGAGCGGCCATATGAAGGGGCAGATCCGGGGCAGCGCTCGCGGCCTGGTGGGAGACGTTGCGGTAGACGCAGCACCTGACCGTCAAACGCGCCGCAGATGCTGGAACCTTCACCGCTCGCGGTGTCGTGTATTATGCCAGGTCACGGGGCTGTAATTGATCGAGCC # Right flank : ATTAGTTGGCGGTCGGGATCTTTACCAGACGAGATACATTATTCATGGCTGCCCGGGTCCGCAGCGCCGTCGGGTGATCCGACCGGTAACAACACCCGCGACTGTCCGAAATGCACCGCATGGGTTGCCGGCTTCACCTGCCGGCCGGTCCCGAGTTAGGACAATTTAGTGTGCATGGCCGCCATTGATCTTGGCGATGACGTCGCGGAGGTCATCGGGTAGCGGGTCGACAGCGGTCAGGATTTGCCTGCCTGCTTTGATCTGTACGGTTCGGAAGCGGCGTGCGGTTCGTACGAATTTCTTGATGCTCCAGCCGGTTTGGGTCTCGATGTAATGACTGACGGCCAGGGCGGCGAACACGATGGTCAGGTGAGCGTCGATGGATTCGCGCTTGTGGTGGTAGATGGGCCTGGCCTGCAGGTCGTGCTTGGACATCCGGAAGCTCTTCTCGATGCGCCAGAGCTGGTGGTAGGCGCCGATGACGAACTCCGGTTTCTGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCCGGTCATTTTGGCCGGACACCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //