Array 1 3728433-3726266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051425.1 Salmonella enterica subsp. enterica serovar Uganda strain CVM 20723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3728432 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 3728371 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 3728310 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 3728249 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 3728188 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 3728127 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 3728066 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 3728005 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 3727943 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 3727882 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 3727821 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 3727760 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 3727699 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 3727638 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 3727577 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 3727516 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 3727455 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 3727394 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 3727332 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 3727271 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 3727210 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 3727149 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 3727088 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 3727027 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 3726966 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 3726905 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 3726844 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3726783 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 3726722 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 3726661 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 3726600 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 3726539 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 3726478 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 3726417 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 3726356 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 3726295 29 93.1 0 .............C.A............. | A [3726268] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3738931-3738659 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051425.1 Salmonella enterica subsp. enterica serovar Uganda strain CVM 20723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3738930 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 3738869 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 3738808 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 3738747 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 3738686 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //