Array 1 16362-15559 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOK01000086.1 Saccharopolyspora shandongensis strain CGMCC 4.3530, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================= ================== 16361 37 100.0 36 ..................................... GCCGACCGCAGCGGCAGCGTCAGCACCTGCTCGACG 16288 37 100.0 37 ..................................... GAGATGTATCAGCAGCGCAAGCATGTCTCGGCAGAAG 16214 37 100.0 35 ..................................... ACCCACAAAAGACCCATTGCACGTGACCGAGCTGG 16142 37 100.0 36 ..................................... CGACTACGGGACAGGTGTGTCCCGAGACAGGAGCAC 16069 37 100.0 36 ..................................... TCGGTCTCCCCGCCGTCACGGAGGAAGCAGATCCGT 15996 37 100.0 37 ..................................... CTCGCCGAAGCCCGCGCAGCTGTCCTCGACCCGATCA 15922 37 100.0 36 ..................................... GAGCAGTACCGGCAGTGGTGCGAGGACGTCGACCTC 15849 37 97.3 37 .............G....................... CGACATCAAGTGGGTGACCAAGTGGCTCGACGAGCAG 15775 37 94.6 65 ...........T.G....................... CTCGTCAGGGGGCCGGAGATGATCGCAACCGGAAAACGCCCATGTCGTTGTTGGCCACTACAGCC 15673 37 94.6 37 ...........T.G....................... CTTGTGCCAGAGCATTTGCTCCTCCCACGGGCCGAGG 15599 37 78.4 0 .........A.T.G....A..T......A.G...G.. | TA,T,A [15563,15566,15598] ========== ====== ====== ====== ===================================== ================================================================= ================== 11 37 96.8 39 GTGGCACCGGCCCACCAGGGCCGGTGAGGATCGCAAC # Left flank : CCGATGGTGCAGGCACGTCTGTTCGCCCGTCACCTGCGCGGCGACCAGGCCGCCTACACCCCCTGGGTGGCGAGCTGACATGGAAATACTCATCACCTACGACGTCGACACCACCACCCCAGCCGGAACGCGCCGGCTGCGCCGCGTCGCCAAAATCTGCGAAGCCTACGGGCTCCGCGTGCAGAAGTCAGTGTTCGAGATCGTATGCACGCAGGTCGACTGGATGCTCATGCAGCGACGCCTCCTCGACGCCATCGACGCCGACCACGACAGCATCCGCGTCTACAAACTCCACACAGGGGCATTCAGCAACGCCGAGCACCTCGGTCACTCACCACCCGCACCCCACGACACGCCCCTCATTTTCTGATGACCAAGCCGCTTCAGAACACCAAGCGTCCTACGACACGCGGGAGGTCACCGAAGCGAATCCCGGGCGTATCCACATCGGATGAGCAACATCGAACAACTAAAGAAGAACACGCACCTGCTCACGCAGG # Right flank : CTCGGCCGCAGCTACACCCGGCGCTGTAAGTACAGCGGCCCGCCCTGACTAAACCGGACGCCGGGGTGCGGGCTAGATCGTGCCGGGCTCGCCTTCGGGGACCAGGACGGGTAGCTCCGGCTGGTCCAGTGCGAACAACCGGATCCGCAAGCGGCGCATAACTTCGGAGAGCACGGATATCTCGTCGCCATGCTGCTGGCGATACACCGCCACGACGTCGTGCGCATCCTGGCAGAGCTCCTGCCAGGCACCAACGTCGGCGTTGTCCAGCAGTCGGTCGAGGTGGCCAGCGATCGCAGCGGGAACGATGCCGATCTCGGAGGCTGGGCGGGACGAGCGGAGGGGCCGCGGTAGCGCTCGGCCGGTGGTCGCAGGCGCGCGACCTCCCGTGCGTCCGCGTCCACGGCCAGCAGCTCCTGCGCCCGTGCGGCCCGAAGTCGGGCTGTGACGTTGCTGGCCGTCCACCGTGCGCGCAGGCTTTCGGGCGGCGCTGCCGGGTA # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCACCAGGGCCGGTGAGGATCGCAAC # Alternate repeat : GTGGCACCGGCTCGCCAGGGCCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.80,-17.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 48370-47732 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOK01000061.1 Saccharopolyspora shandongensis strain CGMCC 4.3530, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48369 29 89.7 31 ...........A...A........T.... CTGTTCTGACCGTGCACCAATGAAGCCCCAC 48309 28 82.8 32 ....A.T..........-......T...G CTCACGCCGATTCTGGTACAGCTCCGCAAGGA AC [48304] 48247 29 93.1 32 ......................C.T.... GGGCGGCGAACCGTGGCCAGCGTGGATCAACC 48186 28 89.7 32 ........T...-...............T TGTGCGAGCAGGTTCCTGTTGGCGTTACGGTA 48126 29 93.1 32 ..T...........C.............. GCGGCCAGCCGGTCGTCTACCTCGTTCGACTG 48065 29 86.2 32 ..........T..C.T............G AGCAGCTGGTACATCTTGGCTACGTCGATGGC 48004 29 93.1 31 ..........................C.T GGACGACGCTGCAGGCCCCGATCTTGGGCGA A [47981] 47943 29 89.7 32 ..........T..C..........G.... ACGGGCATGGGGTGCAGGCCGCGGTGGTCTTT 47882 29 82.8 32 ..........A...C..C......G...T GTCGTGCACGACTGGCATGCCGTGCGTGGCAA 47821 29 100.0 32 ............................. TTCTACATCAGTGAATGGCCGGCACCGCCAAA 47760 29 82.8 0 ..T.A........CC.........G.... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 89.4 32 GTCGGCCCCGCGCATGCGGGGATGCTTCC # Left flank : ACGTGTCTGTTTTCCTGATCGTTGCCTTCCCCGGTCAGGCGCAGGGTGAATTCCGGGACGTGGTCGGTGAGGACCGTGCCTTTGAACTTCCCGTTGCCCAGGGCGGCATCGGCGCTGTCGAAGCGGACGCGGTTGGTCGCCTCGATGTCCTTGTAGAAGGGCAGGGTGTTGCAGTCCCGGTACTCGCCGGTGAACCCGATGGTCTCAAGGAAGTCCACGGTCTTGAACGGGCCGACGCCGACCTCGTTGGGTGAGGTCACGGTGATGACCTCCATCGCCGGCCGGGATTACCAGCCCTTGATGGTGTCGGCGCGTTCGAGCGGCCCGGTGCAGGTGACCTCGGTGCCGCGGCAGTCGAACCGGATGGTGAGGAAGGTGAGTTCGTCACGCAATGTCGTGCTCTGGTGCACGTTCTCGACTGTGGTGACGTAGTCGACCCGCCTGCTGCCGTCATAGGCGAAGGCCAGCACCCACAACTCGAAATCGAAGAAGCCGAGGCA # Right flank : CGAGATGAGGCGCGGCTCATGCGTCGGCCCCGCGCCAACATTATGGATTCTGATATCCAAAACTGCTTCTCGGCCAATCAGCTCGTCACGTTTCCTCGGCCATCCTGGTCAAGGTCGCGATGTGCAGGCCCAGCCCGTCGGCCTCGGTTGGGTGCGCGTTGCAGTCGCCTGCGTACGCAGGGCACGTCCTGTAGCCCTCGCCGCTAGCGAAGCCGTCAGGCCCCTTGCGCGCGGTCGTAGGCCGTGCGTCGCCTCTAGGCAGGCGGTGGAATGTCGGACGGTTCGAGCGGCTCAGCGAAGCACGACGGCGCGTGGCACGGAGCCATCCGCTGCTCAAAGCGGCTCATCGTTTCGGCTCGTCGATGCCGTACTGGGCACGTGCCTACCAGGCGGTTCTCATGGAACGCTGCTCTGAGGACGTAGACCTGGCACTCGGACAGTGGGGGAGCGACGGCCGCTTGTCGGCGGGCCCATTCTTCGAGCGTTTCTGAGGTAGAGGC # Questionable array : NO Score: 3.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCATGCGGGGATGCTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //