Array 1 8696-12408 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBM01000037.1 Campylobacter concisus strain AAUH-4UCti 1101007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8696 30 96.7 35 ....G......................... TTTTTTGGCTTTTATACACGCTTGAGCCGCTTTGA 8761 30 96.7 34 ....G......................... GTGCGGTGTGGCAAGGAGCTGATCCAAATGCAAA 8825 30 96.7 36 ....G......................... AGCTACCGCCGCTAAAAATGCACCATATCGAGGTCG 8891 30 96.7 35 ....G......................... ACATTTGTAAGCTCGATAAAGTTGTTAAGCTTAAA 8956 30 96.7 34 ....G......................... TACAATAGGCGCTAGCGGTAGGGGTGTTTTTACG 9020 30 96.7 37 ....G......................... AAAAGACTACTAAAGAGCCTTTTTCCGCTAGGTTGAG 9087 30 96.7 34 ....G......................... ACACGATTAGCTGGCTCTTGCAAACTACGATCAG 9151 30 96.7 37 ....G......................... TTGATCACCGTATCAGCCTCACGCCCTAGCACAGTCT 9218 30 96.7 36 ....G......................... ATTAGGCTAGTAAGAGAGCCTTTCATATTTTTCTCA 9284 30 96.7 37 ....G......................... TTTTCAACTAGAGCCTTTCTTATCTTGCCCTCGCTAT 9351 30 96.7 36 ....G......................... ATATGGTAATTTTTGCAGCTTCTGGAGCACTTGCTA 9417 30 96.7 35 ....G......................... ATCCTTTATGATCTCAAATTTATCTACATAATTAA 9482 30 96.7 35 ....G......................... ATAGATGATGAAACATTAAAGGCAGAGATTTTAGA 9547 30 96.7 35 ....G......................... TTTAGATTAAATGCTTTCTTCGCCATTTTGCTTTG 9612 30 96.7 34 ....G......................... TTTTACTTTTGCCACTAAGGGGCGTCAGATATAA 9676 30 96.7 34 ....G......................... CTATGTCATACCCAAAGCCCTCAATGTTTTCTGG 9740 30 96.7 34 ....G......................... AGCTCAAATGTAACAATATCCTCCGCTTCATCAG 9804 30 96.7 37 ....G......................... TAGAAGGCACGGAAGAGTTTGACCTTTTTGCCTTTAA 9871 30 96.7 36 ....G......................... AGGCTTCATCGCGCGTAATAAATGTATCGCTCATTT 9937 30 96.7 36 ....G......................... GGGCGACTATTGGTAGCGGAAAAATAAGCGATCAAA 10003 30 96.7 37 ....G......................... AATGATTTGACTGCATCGTCTTGCTTTTGCCAGTATA 10070 30 100.0 36 .............................. AACAATCTCAAAAACTTGTAAAAAATAGCGTTGTTA 10136 30 100.0 37 .............................. GCTTTTGTTGTCCCTATTTATGCTTCTTTTGTGGCTA 10203 30 100.0 37 .............................. AAGAAAAGTCATAATTGATAGTTTCGGTTGATTTGAA 10270 30 100.0 36 .............................. TCATACTCTAATGAGCAATAAAGACAAGCTAATGCA 10336 30 100.0 38 .............................. ACGGTACTACTCAAGGCGGTTGCATTGATTGTTCTTCA 10404 30 100.0 37 .............................. CCAGCCGTGATAGTTGCGTCGGTGTTTTTTGCACTCA 10471 30 100.0 36 .............................. AAAAATGTTCTTGGCTATGGTCTAAGTAGTGGTTTA 10537 30 100.0 37 .............................. AGTTTTTTTGAAAATTACAAAGAGGAGTAATAAATGA 10604 30 100.0 37 .............................. AGCTCGATTGAGAACATTAAAACTCTCGAAAGCCTTT 10671 30 100.0 36 .............................. CCTTCAAACTTACCAGAAGCTGAACTTCTTACAAGA 10737 30 100.0 36 .............................. AATTTGCTAGCTTTTGCTTTGCCTCGTCCATATCAA 10803 30 100.0 37 .............................. TTTATTGACGGCATTGGACTAATGGGCGAGGTCGTTG 10870 30 100.0 37 .............................. TAGTGAGAATGTGTATCTGAAAAGCCGCCCCAACCTC 10937 30 100.0 34 .............................. TGGAGAGCCTGCGCTTGCTTCACTTTTGCCTTTG 11001 30 100.0 37 .............................. ATGAAGTGGTAAACGAAAAAACAAAACATTTGCTCTA 11068 30 100.0 35 .............................. TAAAATTTGCTCTAATATGCCCCTAAAAGGATATA 11133 30 100.0 36 .............................. TCGCACTTGCTACAAGTCCAGCTGTGTTGTTATCTG 11199 30 100.0 34 .............................. CGATAGGCTTAAGATAAATAATAAAGTTGATGAA 11263 30 100.0 36 .............................. AAAGATAAGCCAGAAGCAGTACAAAAAGTCTATATG 11329 30 100.0 34 .............................. TTTTATTGGCGTGCTTTTTATTTACAAGGGCTTT 11393 30 100.0 35 .............................. TCCCACTGGTCGCACTTTCTAGCCCTTAGAAAAAT 11458 30 100.0 36 .............................. TTTTGCTTGAAGCCAAAGCATTTTTTGTCAGCGATT 11524 30 100.0 35 .............................. TAAAACTTTTGAGTGATAGGATCAAGCCAAAAACC 11589 30 100.0 39 .............................. TTTGCGATAGACGATACAAAAGACGCCGACGCTACAAAT 11658 30 100.0 34 .............................. TGCAAGTAGTCCGTTTTAACCTGCCATATATAAA 11722 30 100.0 35 .............................. ATTGATTTGCTAGATGAGTTTTATACAGTATCTAT 11787 30 100.0 35 .............................. TCCTTTTATAACTTTTTCATAAGTTGCCTCAAAAA 11852 30 100.0 37 .............................. TTGACATCTTCAACAACATAGTTTTTCAGGTCAATAC 11919 30 96.7 35 ......................C....... CTAGCTCTTCAAATCCGCTAAATTTAAGCACATCA 11984 30 100.0 35 .............................. TAAAAACCCCTATTCAAAAATCATCAATCGATATT 12049 30 100.0 35 .............................. AAAGATTAAAAGCTTGTGTGTAGTTCATTTTTCAT 12114 30 100.0 36 .............................. GCGACAAGATGTTTTTTATTTTGCCTATCGTATCGA 12180 30 100.0 34 .............................. CTTGATACTTTGAAATTACCATATTCAAAACCCA 12244 30 100.0 38 .............................. TTGTTATGTCTATGTTTGAAGTTGAAAAGCCTGATAAA 12312 30 100.0 37 .............................. CCTGAAAGCGTGCAGACTGGCACATTTATGTTTTTAG 12379 30 86.7 0 ....G.........T..........T...T | ========== ====== ====== ====== ============================== ======================================= ================== 57 30 98.5 36 ATTATAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGACACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACTGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAATGACGCTATGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGATGCGCCTTATGAGGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGTGTTTTTTAAGATTTTAGAATGCTTGAAATTTAGGGCTTGGCGTATTTACACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAACGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : TCTTAAAAAAAGATATCCTTAAGCAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGATATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGGAGTTGGACCCAAATATGGGCCCGAATAAGGTAGTTATAGACCTTCAAAAGGGTTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGACGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGATAAGCAATACTTTAAAAGTGAAGTATCTTTGTAGTCTATAAAATCAATCTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //