Array 1 312597-311966 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXZC01000001.1 Streptococcus mutans strain UAB-13 NODE_1_length_509546_cov_113.263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 312596 36 100.0 30 .................................... TTTTGAAATCTACAAAATATGGATTACAAA 312530 36 100.0 30 .................................... ATTGAATAATGGAAATATCTATCAAGCAAC 312464 36 100.0 30 .................................... TGACCTATTTGATAGAATCCAGGAGATCCT 312398 36 100.0 30 .................................... TTTAATAAGCAAATAAAGGCGCTTGAGAGG 312332 36 100.0 30 .................................... CTTATCTTTGATAGAAGATAAGTTTAGCTT 312266 36 100.0 30 .................................... TTTTGAAATCTACAAAATATGGATTACAAA 312200 36 100.0 30 .................................... CTTATCTTTGATAGAAGATAAGTTTAGCTT 312134 36 100.0 30 .................................... TTTAATAAGCAAATAAAGGCGCTTGAGAGG 312068 36 100.0 31 .................................... TCATAACCTTTACAAAATTATCGGGTATCGC 312001 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGAGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAAGCGCTAGAAAGATTGATTTCTAGCGCTTTTTTAGGTATAATATAATTAATTAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : AATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTTTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 422757-421202 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXZC01000001.1 Streptococcus mutans strain UAB-13 NODE_1_length_509546_cov_113.263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 422756 28 100.0 33 ............................ TTCAATAGCTTCCGCTTCTTTTTGCTCTTGCGC 422695 28 100.0 33 ............................ TATCTTCTGACTTGATTTCTCTATAAGCCCTGC 422634 28 100.0 34 ............................ TAAGCGGAATATCTAGCAAACTCAAAGAGTCTAG 422572 28 100.0 33 ............................ CTGCTATAATGGCACAGGCCGCTACTGCTTACG 422511 28 100.0 33 ............................ CTGCTCTGTAAAATCCTCTGGTGAGATGAACTG 422450 28 100.0 33 ............................ TACGATACTAGACGCTCGAACTGATGACTCGTT 422389 28 100.0 33 ............................ TACAACTAGAGATGTTGAAGTCGATGGTATCAA 422328 28 100.0 33 ............................ CGGGCGATAGAATACGTGTTGATGTATCCGACA 422267 28 100.0 34 ............................ TGGAACCCAGCGTACAATACAAATGACATTCTGC 422205 28 100.0 33 ............................ TGCGCCTTTGCCAAGCAATCCAAGGTCAACATC 422144 28 100.0 33 ............................ CGCATTTTGTATGAATGCAGGTTCAGATATTGC 422083 28 100.0 33 ............................ TATGTCCACGAGTTTTGACGAAGCCAAAAATTA 422022 28 100.0 33 ............................ CAACTTGTCTCTAGAGGTCTTAAGTGAGGTCGA 421961 28 100.0 33 ............................ TACTGCTAAGACTCGTGCAGATGATAACTTTGT 421900 28 100.0 33 ............................ TAGCCCTGCTTTTCTAACTCTCGATAATTTAAA 421839 28 100.0 33 ............................ TTGCTTAGTAACTTTGGCAAGTAACTGAGTCGC 421778 28 100.0 33 ............................ TGCCTTGTTTCGTCGTCAACTAAAAATCCAGTC 421717 28 100.0 33 ............................ TATAATTGGATGGGAACTGGTCAATATCATCAA 421656 28 100.0 33 ............................ TATCAGATTAGTAAAGAAACAGGTTTGCCACAA 421595 28 100.0 33 ............................ TGTATCAAGCTATGTATCACTATGAAGATTATG 421534 28 100.0 33 ............................ TAATTAAAGTTGGATAAAGAAATAATCCAAACA 421473 28 100.0 33 ............................ TAATTAAAGTTGGATAAAGAAATAATCCAAACA 421412 28 100.0 33 ............................ TACAACAATATATTCTGATACCATAGTAGCAAC 421351 28 100.0 33 ............................ TGGAAGGTCGTTAAAGTTAAAGCTGATTTGTGG 421290 28 100.0 33 ............................ TAAAATCTAGTTCAATTGCTAAACCGTTTATAG 421229 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 26 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCTCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : ATTTTACCCGCACGAGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //