Array 1 22005-23353 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEEV01000006.1 Pseudomonas aeruginosa strain Pae_CF67.05r CF67.05r_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22005 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 22065 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 22125 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 22185 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 22245 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 22305 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 22365 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 22425 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 22485 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 22545 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 22605 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 22665 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 22725 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 22785 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 22845 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 22905 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 22965 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 23025 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 23085 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 23145 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 23205 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 23265 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 23326 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33873-32228 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEEV01000006.1 Pseudomonas aeruginosa strain Pae_CF67.05r CF67.05r_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33872 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 33812 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 33752 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 33692 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 33632 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 33572 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 33512 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 33452 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 33392 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 33332 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 33272 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 33212 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 33151 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 33091 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 33031 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 32971 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 32911 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 32851 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 32791 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 32731 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 32675 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 32615 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 32555 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 32495 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 32435 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 32375 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 32315 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 32255 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26238-25609 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEEV01000016.1 Pseudomonas aeruginosa strain Pae_CF67.05r CF67.05r_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26237 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 26177 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 26117 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 26057 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 25996 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 25936 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 25876 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 25816 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 25756 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 25696 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 25636 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //