Array 1 74973-73866 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375783.1 Serratia marcescens MC459 Contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 74972 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 74912 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 74852 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 74792 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 74732 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 74672 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 74612 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 74552 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 74492 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 74432 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 74372 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 74312 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 74252 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 74192 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 74132 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 74072 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 74012 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 73952 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 73892 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 86665-83454 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375783.1 Serratia marcescens MC459 Contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86664 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 86604 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 86544 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 86484 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 86424 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 86364 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 86304 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 86244 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 86184 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 86124 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 86064 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 86004 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 85944 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 85884 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 85824 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 85764 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 85704 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 85644 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 85584 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 85524 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 85464 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 85404 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 85344 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 85283 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 85223 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 85163 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 85103 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 85043 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 84983 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 84924 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 84864 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 84804 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 84744 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 84684 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 84624 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 84564 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 84504 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 84444 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 84384 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 84324 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 84264 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 84204 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 84144 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 84084 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 84024 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 83964 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 83904 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 83844 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 83784 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 83724 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 83664 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 83604 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 83544 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 83484 28 96.4 0 ....................A....... | G,A,A [83457,83461,83463] ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //