Array 1 2438-2647 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000200.1 Marinitenerispora sediminis strain TPS81 scaffold_199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2438 28 96.4 33 .........................C.. GGTCCGCCAGCAGAAAGAGATCGCCGCTGTCTT 2499 28 96.4 33 ................C........... GTACTTCAACTTCCAGATCGATGACATCGACCC 2560 28 100.0 33 ............................ TTGACGCGGCAGTATCTTGACGCACCATCACAC 2621 27 75.0 0 .T...-.....C.......A....TGG. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.0 33 GCCCGCCCCACGCACGTGGGGGTGAACC # Left flank : TACTCCCACGAATGGGACTCGCCTGAGCGGCCGGCCGAGCTGGGCGCCTACGTCGCGGCCGACCTGCTGCGCAAAGGGGCGAGAGGGATCATCGACGGCATCCCGCACTGAGCGAGGAACTGTCAGCACCAGGCGGTACCGTCACCCCGCAACCACCCCCCAAGGAGGGGCCATGGACTTCATCGCCGCCTACCTGGCCGAGCACCTGTCTCCCAGCCAGCTCCGCGAGCTGGCCGATGACCTCGACAATGTGGAGCGGCGCGCATGGCTCACCCGGTGCCTGCCAAATGCGGCCGACGACGCTGCCCGACACGCTGACACCCGCCGGAGCATCCGCGCGGCACGGGACGGCCTGACCGCAGCCGAGATCAGCGAGCGGCGGCGAGCTGCGCGGCGACACGCCCGTCCGGGCGGGATCCTCGGGGCCGTGATCGCGGCCGAGGAATCCCGCATCAGTCGCCTCGCGGAGTACGACGGCCGGCCCTACCGGGCGACCGCCG # Right flank : CCGTTCGTGCCTACGCTCGGCCCACCGTCAGCGGAGGCCGCGCATCCGCAGCACCCTGAGTGCCACCATCAGGTCCAGCCGCAGGTTGGGGTCGGTCGTGAACGGGCCCAGCATTCGTTCCAGTTTGCCGATGCGGTACCGCAGGGTGTTGTAGTGGAAGTGCAGCACCCGCGCCGTCTCCGCCACGTTGAGGTTGTTGTCCAGCAGTGCCTCCAGCGTGCCGCGCAGGTCTGCGGCCTCCGCGTCGTTGGGGGCCGCGAGGGCGCCGAGGGTCTCCTCGGTGAAGGAGCGGAGTTCGGCGCCGTCTGGGACGAGGCTGATCAGCCGGTAGACGCCCAGGTCGTCGAAGTCCGCGACGGCGCCCACGCCGTGGATCTGGCGGCCGACGCGGGCCGCCTGCTTGGCCTGCTCGTAGGCGGCCGGGATGTCCTCCGGCCGGGCGACCACCCGGCTGACGCCGGTGGCGAACGGGCGTCGGCCGCCGCCGCCGTCGCCGGAGA # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 22985-22285 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000031.1 Marinitenerispora sediminis strain TPS81 scaffold_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22984 29 100.0 32 ............................. CCGCGGTACTTCGACCAGATGTGCAGCACGAA 22923 29 100.0 32 ............................. CCGTCCTCGTCGCCTTGATCTTCTGCTGGAGG 22862 29 100.0 32 ............................. TCCACCCGTTCCTTCCACGTGAACACGAACGG 22801 29 100.0 31 ............................. CGGCTGCTGCGGGCGGTGGCGGGGAGTCCCC 22741 29 100.0 32 ............................. TGCGGCCGACCAGCTCGGGGAAGACCCGGCCG 22680 29 100.0 32 ............................. CAGGTGGTGAGCACGCACCGGATGGTGTAGGT 22619 29 100.0 33 ............................. ATGTCCTCGACCCGGACCGGGGCAGGGGCCGGC 22557 29 100.0 32 ............................. GAGAACTGACCCATGGCAGGACGCGACGGCTT 22496 29 100.0 32 ............................. GCGGCTCGGGACGTTCGTCCCGGGCCGGTTCC 22435 29 100.0 32 ............................. CCACAGGTGGTGGCTCATGGTCGGATTCCCTT 22374 29 100.0 32 ............................. GGCACGACTGCCCGCGATGCGAGCAGCCCGCC 22313 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTCCGCCCCACACGCGTGGGGATGAACCG # Left flank : CCCACAGCGCGTGACGGTTAGGGAAATGCCGGTACACCGTCCCGACTCCCACGCCGGCGAGCCGGGCGATGGCGTTGAGTTGCAGCGAGTCGTCACCGGCGGCCAGCTGTTCTCGGGCGACCTGCAACACCCGGGCACGGTTACGCGCGGCGTCCGCCCGCAACGCCGGCCCCTGCCTGCCTTTCGGTGTCACGGGGCCAGCTTAAGGGGCCCTCCGGTCGTGGCTCGGTGACCGTCCTCGTGGATCAGGCGATCCATGGCCGTGGAGATGCGAGTGCCCGACAAACCGCCGACGCAGGATGGCAGGGCAGCTCCGCCCTCCATCCACGCCCCGCCCCATCGGGCTCGCCCGAGGCATCACCTCAGCAGCACGACGGCTCCTGTCGGATGGACATGACTGCGATGACGTAGGGTAGTGAAGCGGTTCCAAAGTCCTTTGCGACGGGATGGAATACGGTCGCGTTTTGGTAACGGACGCGCTCCATCGCAGGTCGCAAAGT # Right flank : CCGCGGCGACCGCCGGTCATCCACAGGTCTGCGGTCGGCCTGGCGCCGACGCCAGCGGGCGGCATCCGGGGAGGACCATGGGCCGCTGCGCGCGGCCGCACCCCGCAGGGGGCACAGCAGGGGCCCCGCCCATCGGGCGGGGCTCCGTTTGTGATCTGCAAACCGGATCAGCGCCCGGAGTGGAGCGGGGCGCCGCCGGCGCCCTACCGGGCCTGGCGCTCCCGGGCCCGCTCCTCGGCGGCCTCCCGGACGCGGCCGGGTGGGGACACTTCTGCGCCGTGCGGCCGTCGGTGCGTAGCGTGGTGCTCCCCTTGATGGTCGGAGGTCCTGTCATGGACAAGGAGTTCTTTCGGCTCTATGCCTTGGCCGCGGCCGGGATGCTCGTCGTGCTCTTCCTCGTGTTTGCGGTCATGGAGGAGACCGGGCCGTGGCCCTTCGTCCTGCTTCTGGTCGTCCTCGGGATCGCCGCGGCCGCCGAATCAAGAGGGAAGAGGAAAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 2397-3805 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000233.1 Marinitenerispora sediminis strain TPS81 scaffold_232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2397 37 100.0 36 ..................................... TCGCAGGCCAACAGCGGTCCCGGACTGTCCGACCAG 2470 37 100.0 36 ..................................... CCATCAGGAACTCGCGGCTCTCCTTGCGAGCACTCG 2543 37 100.0 35 ..................................... CACCAGGGAGAAGTCGGTGTAGTGCGCGTTGAGGG 2615 37 97.3 35 ....................T................ GCCGGCGGGGCCAGGTGGACCGGACGGCCCCGGCG 2687 37 100.0 36 ..................................... ACTGCTCGATCTGGTTGGTTGCCGTCCGGCACCCGA 2760 37 100.0 35 ..................................... TCAAGAAGCAGCGACCGTGCGGGCTTCCACGCGAC 2832 37 100.0 34 ..................................... AGGTCCGTGCGGCGCAGCAGCGGCGGAGGAACCG 2903 37 100.0 35 ..................................... CAGCACCATCTCGCGGAACTCCCCGTCCGTGACGG 2975 37 100.0 35 ..................................... CCCGGCCCGAACTGCCGGCCGGGTGGAGCGCCGAG 3047 37 100.0 35 ..................................... ACTTCGAGCAGCGCCTCAACGCGGCCCGTGCGGGC 3119 37 100.0 35 ..................................... GCTGGCGCGGTGGATGGCGGCCTCGACGTCGGCGG 3191 37 100.0 35 ..................................... GAGGCCGAGGCGGGCTACCGGCTGTCGGGGGAGCA 3263 37 97.3 35 ...............G..................... GGGCTGACGAAAGGGCTGGAGGTGGACACCGGGGG 3335 37 94.6 36 ........T......G..................... ACGAACTGCGTGATGGACTGCCCGAGGATGTGCAGG 3408 37 100.0 35 ..................................... CTGCACACGCGAGGTGTGGCGCTGGTCCACGAACT 3480 37 100.0 35 ..................................... GGCGCTCTCACCCTGCGCGGCCCCGACTGGCCCGT 3552 37 100.0 36 ..................................... GGCCTCACTATCTGCGCGATCATGATGATGCTCGGC 3625 37 97.3 37 ..............T...................... CTGGACCTCGCCGACCTCGCACCAGTCGAGGGCGGAG 3699 37 97.3 34 ..............T...................... CGCAAGCCCTGTTCGGTGAGGCCGATCTCGTCGG 3770 36 78.4 0 ......A...T...T...A.AC........-.C.... | ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 98.1 35 GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Left flank : AAGCTCCAGTCGGCGGGCTGGCGAACCATGCCGAATTCCGGTCCACCGGTAGGTGCAGGAGCGGACGCTGTCGGCCCCGCCCAGCGGTTGTACGCGGCGTTGCGCTCGCACGGCGTGCACCGGATCTATGGAGCGGTGCACGTGTCGGTGTCGGTGCTGTCGCTGCCGAGCGGGATTACGGTGTGGTGCCGGAGCGGGGTCTTCGAGTGGAGTAGCGTCGGCGGCGGTAGGACGGTGGTTCCGGCGGCGGATGTTCAGGAGGTGGTGCGTTTGCTGTTGGCGACGCTGCACACGTGAGGGCGTGGAGTGTATGTCGGCGGTTAAGGGTTTCGCGTCTTTCAAGGAAGTATGGAAAGGTCTGGGTTGGATGCTTGGGGACCTCTAGTGGTCAGAAAATCCCCGGGAGGTTCTTAAGCATGAATTGGGCACAGGGGTATGAAATTCCCCGTCTTGCAGCTCGGCGAATGGGTTCGTGCTCACGAAACCGCTGGTCGAGTGCC # Right flank : CCTGCCTTACACCGGGCCTGCCCACCTGCTCTATAGCACAGCACTCCTCGCAAGAATGGTGAATTGGGAAAACCACTTCTCAGTTGTCCATTTCAGGTCACGCTGGTTCCGTGTGGCTCTGATTGTCTCTGGGGTGTCTTACCTTTCCTTCCGGTGCTCGGGAGGAGGGGAGATGGTGGGAGAACTTGTCGCGCACAGCCCGAACAGCGACGGGCAATGGCATTCGCTTCGTGATCACCTTCGTGGAACGGGGGATTTGGCATACGAATATGCGAAAGCGTTCCAGTCGGGCGATTTGGGGCGTTTTCTTGGTCTGGCGCACGATGTCGGCAAAGGAAAGCCAGTCTGGCAGGACGGTCTGGTATGCGTGGCTGGTGCCGATCGGCCGGTTGGTGTTCCCCACAAGCACGAGGGAACGTGGTGGGCGGCTCGCCATGCCGGGGTGTGGTCGGCCGTGGTGCTGGGGCACCACGGCGGGTTGCCGGACCGGCAGGACCTCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 15729-14357 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000123.1 Marinitenerispora sediminis strain TPS81 scaffold_122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15728 29 100.0 32 ............................. CGGCGCCTGTGGCCGCTCATGCGCGATGGCCA 15667 29 100.0 32 ............................. GCATCCACACCCCCATTCGTCTCGGCAGTGGC 15606 29 100.0 32 ............................. CACCCGATCCGGATCCGGGTCCAGGCCGACTC 15545 29 100.0 32 ............................. TTGGGGCGGCAGTTCCGCCTGTCTGCACGTCG 15484 29 100.0 32 ............................. TGCGGGGTCGCGCTCCTGCTCGCCACGCAGGA 15423 29 100.0 33 ............................. ACGACGCGGGCGCCGGCAGCGGCCGACGTCCGC 15361 29 96.6 32 ............................C CGTGCGGGGGCGGTGCGCGGTCCTCCTCAGGG 15300 29 100.0 32 ............................. TTCGGCCGCACCGGGCTCCGAGGTCTGCCGAC 15239 29 100.0 32 ............................. GCAGGACTCGGCTGGAACATCCTCCGGGGCGT 15178 29 100.0 32 ............................. CAGTGGGGAACGAGCGTCGCGACCATCACTCG 15117 29 100.0 32 ............................. ACCCCAACCCCGCTCTCAAGGCAGCGGCGGAG 15056 29 100.0 32 ............................. ACCCCAACCCCGCTCTCAAGGCAGCGGCGGAG 14995 29 100.0 32 ............................. GGCATCGCCTACGCGGTGGGCATCGCCGATGA 14934 29 100.0 32 ............................. CAGAGGAACAGGGCCTTCGATCTCATCGGGCT 14873 29 100.0 32 ............................. CGTGACGAGTTCGGGCGTGGGCTGGTAGGCGA 14812 29 100.0 32 ............................. TGCGTTCGACCACCTGCCACACCGGACTGGCC 14751 29 100.0 32 ............................. CCGCGCGAATCGACGCTCGGCTCGACAGGCTG 14690 29 100.0 32 ............................. CCCACGACCTCACCAAGTCCGAACTCGTCAAC 14629 29 100.0 32 ............................. CCCTCCACGGCCGCCGAGGTGGCCACGGTCAC 14568 29 100.0 32 ............................. TGCCAGTGTCCGCCGCTCCATGGCGCGCACCA 14507 29 100.0 32 ............................. GCCGGTTGCGGCTCGGCGGCACGTAGACGAAC 14446 29 100.0 32 ............................. TGGTGGGTGCCGGCCACCATGGGCGCCGCGCA 14385 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : CACCTCGG # Right flank : GTCTCGGCGGCGTGGCGCGCACAGGCCGGACCTCCCGCACCCCCCGACGGCCGGCCGCGCATCCCCCTCCAGACCGGGGCCGGCGCCAACCCCGCCCCCGGCGCCGGGGGCGGTTCGCGACCCTCGTAAAGTGGACGGGTTGCCGCAGCTCGGGCCGCAGGTCCGGGCGGGCACGCGGTACCGAGGGAGCGAAGTCCGGTGTGAATCCGGCGCTGTCCCGCAACTGTGACGCCCGCCGACGACGGCGGGACGAGCCAGGTCGCCTCCTTCGGACACCGACGATCGCTGTCCTCGTGGGAAGGGCAGTCCGTCCGCACCGGACTCCGGACTCCCCCCTACGCCCCTGCCTGTACCTGGAACTGAGGAGTCCCGTGCGCGTGCCACGCCGCCTGCTCGCCGTCCCCCTGCTCACCGTCCTCGCCGTCTCGGGCTGCGCCTCCGGCGCCCCGGAGGAGACCGAGGCCGCCGCACCGTCCGCCGGTTTCCCGGTGACCGTCACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4217-2292 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000326.1 Marinitenerispora sediminis strain TPS81 scaffold_325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 4216 29 100.0 32 ............................. GCGTCGGCGTTGTCGGTGTCTGGGCAGATCAG 4155 29 100.0 32 ............................. ACCGCCGGCGACCAGCTCATCTCCGACTGGAT 4094 29 100.0 32 ............................. CCGCCTGACACGGGGCCTCGGCCAGCAGAGGG 4033 29 100.0 32 ............................. TCCAGGGCGGGCTGGATGCGGTGCTGGGCGAG 3972 29 100.0 32 ............................. ATGCCGGCCAACGTCACCGCCAGTACGGCGCA 3911 29 100.0 32 ............................. GCGTTCCGCGAGTTCGTCGTAGCCGGCTTGCC 3850 29 100.0 32 ............................. GAGATCCTGCGCCAGATCCGCCAGACCGGCTC 3789 29 100.0 32 ............................. AGCATCGGGGCCGCCTGGAACTACTTGTCCGA 3728 29 100.0 32 ............................. GACCGCCGCGCCGAACTGGCTGCGGCCGGCCA 3667 29 100.0 32 ............................. GTGTGGCCCAGCTTGCGCAGCTCCATGGGGCT 3606 29 100.0 35 ............................. AGGAGGTGGCCGTGGCTGCCGCGCTGGCGCCGGCC 3542 29 100.0 32 ............................. GCCGACCTGCGCGACACGGAGTTCGATGACCC 3481 29 100.0 32 ............................. GCGGCCGAGGACTGGATCGACCGGGCCGAGTG 3420 29 100.0 32 ............................. CGCGAGTACGAGCGCCAGTTCCTCCACCACGG 3359 29 100.0 32 ............................. CGCGCACCAGCTCGGGCAGGTTCGCCATGGCC 3298 29 100.0 33 ............................. GCGCGCGCGCCGCGCCCTGAGCCCGGAGGACAA 3236 29 100.0 32 ............................. ACCTCCTTGAGGTGATGGGCGGTCCCGAACGA 3175 29 100.0 32 ............................. GCCACCCTCCAGCAGCGGCTCCACGCCGAGCG 3114 29 100.0 32 ............................. CGTGCGCGCCTCGCTCACCGACCGCACCTACG 3053 29 100.0 32 ............................. GGTCACGATCCCAGCTCCGCTCGGATCGCGGC 2992 29 100.0 32 ............................. CCTTGGGACTGCTGAACTTCCTCATCGGCGCC 2931 29 100.0 32 ............................. CTCGCGGTGATCGAGCCGTTCTCCATGGAGTT 2870 29 100.0 32 ............................. CCCTGGGTTTATTACATGTGCCAAAACGGGCC 2809 29 100.0 32 ............................. TCGGGCAGCCAGGTCCGCACGCGAACCTCGCC 2748 29 100.0 32 ............................. GTCGTCCGGCAGTACCTCGACAGCCTCGGCCT 2687 29 100.0 32 ............................. CTCTCGATGCGCTGGCCGAGGGTGCCGTGCAG 2626 29 100.0 32 ............................. GCCCAGTTCGAGGCCCAGTTCGCCGCTGACGG 2565 29 100.0 32 ............................. ACGTCGGGCGACCGCCGGTTCGGGGCGTACAT 2504 29 100.0 32 ............................. GGCGAGTTCTGCTTCTGGTCCTTCTTGTCTTC 2443 29 100.0 32 ............................. AGCACAACGCGATGACCGGCCGACGAAGCCAC G [2426] 2381 29 100.0 32 ............................. CCGAGACGACGTAGACGTCCCACCCTGGCCAC 2320 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 32 29 100.0 32 GCCCGCCCCACGCACGTGGGGGTGACCCG # Left flank : GCCGTGCA # Right flank : TCCGTCCCAGCCGGGGCCTGACAGGTACAGGACAGCGGGACGGCCCGCACGCGCCGGTGGCATGGCTACCGCAGGCGTGGTGCGGGCCGTCCCACGAACTGTAGCGGGCATCGCGCTGGGACCCCTAGAACGCAGGCGGTCCCGGCCTACTCTGGCAGTGCGAGCCGAACAGAACAGGACGGGACCATGGGGCAGACTACCCCGACGGCGGCAGCCCTCCGCGAAGCCATGGACCGCGCTGGCGTGGGCGTGCGCGAGCTTGCCCGGCGAGTCCACTACAACCATGCCTACGTCAGCCGCGTCCTGCACGGACGCCAGCAGCCCAGCACTGATTTCTTGCGCCTGGTCGACACTGAGCTGGGCACCACACTCGCGCCGACCACGCCCGTCCCGCCAGCATCAGACCCTGGAGACGACATCGGGTCGGAGGTCGCTCACCTCCACGACACCATCCGCCACCTGGTCGCACTCGATGGCCGCTACGGCGGGGACGCCATCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 1575-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000391.1 Marinitenerispora sediminis strain TPS81 scaffold_390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1574 29 100.0 32 ............................. GCGATGACGCAGCGCGGCCTTCTACGTCGCCA 1513 29 100.0 32 ............................. CGGATGACCTCGGCGTCCTGGGTGTCCGTCTG 1452 29 100.0 32 ............................. ATCGGGAGCAGCACGCTCATGGCGAGGGTCTG 1391 29 100.0 32 ............................. CGCCGCACCGCCCCGCGCAGCAACGAGCAGCT 1330 29 100.0 32 ............................. TCCTACGTCTCCTGCAGGGCTTCCTCGATCTG 1269 29 100.0 33 ............................. TCGCCGGCGTGGCGGGCGAGCATGTGCGCCTCC 1207 29 100.0 32 ............................. GACACACCGTGGCCGTGACGGCGGAGCTCGCG 1146 29 100.0 32 ............................. TAGTCGGGGTAGTGGTCGTGGTGGATGTAGCC 1085 29 100.0 32 ............................. CTTGCTCCCGCGCCCGAATAGGCGGGCGAGTT 1024 29 100.0 32 ............................. TCGGGCATGGGCGCGCCCGACGCCTTGGCGTC 963 29 100.0 32 ............................. GAGCGCTACGACGACGTCGCCGACCCCGTGTA 902 29 100.0 32 ............................. GTCTCTCACGTCAGCGCTCCAGTCAGCGTTGG 841 29 100.0 32 ............................. GCACGACCCGGCGCGGCTACGCCGCCCGGCAG 780 29 100.0 32 ............................. GTCAACTGCTGCAAGTTGTTGCCCGCGTTGTG 719 29 100.0 32 ............................. TTGTGCGGGATTTTCATGGGGGGCCTGGGGGA 658 29 100.0 32 ............................. GGGCATGTCGCCCGTTCGGGCCCACTCTTGGA 597 29 100.0 32 ............................. TCCGCGGCGGCGCGCCTCGTCCTCGGTCATCT 536 29 100.0 32 ............................. ATCCGGTTGTGGATCACCACTCGGGATCTCGT 475 29 100.0 32 ............................. CCGTACCTCAGGGAGACGGCGCCCCTGATCGT 414 29 96.6 32 ............................T GCCCCGGCGGTTTCCTGATCGAGGTGCGTGAC 353 29 96.6 32 ............................T CAGCCACCCGGTACACCGGCTCCTCCCCCGGC 292 29 100.0 32 ............................. CGGCGGCCCTGCGCCTGCAGGCCCATGAGGAG 231 29 100.0 32 ............................. ACCAGGAAAAATCACCGTGTGCACACGACTTC 170 29 100.0 32 ............................. CCGTCTCCGCATGACAGGCAGGTCCCGGACTC 109 29 96.6 32 ............................T GCCCCGGCGGTTTCCTGATCGAGGTGCGTGAC 48 29 89.7 0 ............TG..............T | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GCCCGCCCCACGCACGTGGGGGTGACCCG # Left flank : CCGTCCGCCGCTGCCGCGACAAGCGCCACCCGCCGTCCTACCCGGCGGTCGCCTCGGAGCTCATCACCCCCGACGAGCAGCACTACCTCAACGCAGGAACCCGAGAGTGCCTCACGGTATGCGTGGTCCGCGGGCGCCACGGCAACCGAGTGGAGAGCGAACACGTTCTTGAGACCCTCGCAGACCTCCCCCGAGACGACCGGGCCCGGGTCCTGGACGACATCCTCGACGGGTTGGCGGAGGGGGTGGCGGTTGCTTAGATAGGGGCGGCGATCGCGGTCACCGCCACGCTTGCGAGGTGTCCCGTCAGCGCCGTCCCACACTGGCCACCGAGGGAGGGACCGTGTGACCTGTGGTTGCCACGGACCGGCGGCCGCCATAGCTGGCGATGGTACGGCGTGCGATCACGTTCTGTGAGCGGATCGTTACGCAAATCTCTCGCGCGGACGGAAAACAGGTAAAGAAATGATAACGCGCCACGTCGCCCCAGGTCACAAAGT # Right flank : TCAGCCACCCGGTACACCGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 1440-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000005.1 Marinitenerispora sediminis strain TPS81 scaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1439 29 100.0 32 ............................. TTTCGTGCATGCAGCGCACGATACACGTGCAC 1378 29 100.0 32 ............................. CTGGGCTTGGATCCGGTCCACTTGGTCGCGAG 1317 29 100.0 32 ............................. CAGCCCACCGCGATGCTCGTCGCGAGGGCGAC 1256 29 96.6 32 ............................A GCGGCCCCAACAGAGACCGCTCCCTACACCGG 1195 29 100.0 32 ............................. GTCGCCCACGTCGTGGTGTCGCCGGAGCGACG 1134 29 100.0 32 ............................. TCCGTGGCGAATCGCGGCGTGCCGGGCCGCGT 1073 29 100.0 32 ............................. ACCGTGGCCCGCATGTACGGCACGCCGGCCAT 1012 29 100.0 32 ............................. AGTCCGGCGGCCGTGGAGACCCGACGAACCGA 951 29 100.0 32 ............................. TCGTGCGGGGCGCTGGTCGCGTAGTCGCCGAG 890 29 96.6 32 ............................C CGGACCTGCGGGTCCGGGCCTACGTCCAGTTC 829 29 100.0 32 ............................. CTCCCGGTCCGCGCGCTCGGCCATGACCCGCT 768 29 100.0 32 ............................. TACCTCGTCGGCGTAGGCGCTCGACTGGTTGT 707 29 100.0 32 ............................. CTGGTCGGCTGGCACTCGGCCGTCAGCGTCGA 646 29 100.0 32 ............................. CACTACATCAACGAGACCTACATGTTCGGTCG 585 29 100.0 32 ............................. GGGTTGACGACCTCAGGGTCGGTGGCCAGAGT 524 29 100.0 32 ............................. AGGTCGCCCGGGGTGAACTCCATGCCGGACAG 463 29 100.0 32 ............................. GGATGGGGCGTCACCCTGCATGACGCCCTTTC 402 29 100.0 32 ............................. CAGTGGAACGGCGGCATCCCGCCCCGCACGGA 341 29 100.0 32 ............................. CGCGCCGCCTACGTCCGCAAAACCATCGAGAA 280 29 100.0 32 ............................. CTGTTCAGAGGAATCCGTCGACTTAGGGAGCC 219 29 100.0 32 ............................. GATCTCCACCGAGCTGGCGAGCGGGATCGGGG 158 29 100.0 32 ............................. TCCGTGATGGCCGTCGACATCCTCCGCAAGGC 97 29 100.0 32 ............................. GACTTCTCGACGGGCGGCCCCGACGGCGGCCT 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGTGATGGACGAGGTGGAGGCGGCGCTGGACGACACCAACCTGCAGCGGCTACTGGTGATCTTCGAGGAGCTGCGCTCCACGTCGCAGCTGATCGTCATCACCCACCAGAAACGCACGATGGAGGCGGCCGACGCCCTGTACGGCGTGACGATGCAGGGCGACGGCATCTCCCAGGTGATCAGCCAGCGACTCGACCGCAAGGCGGGCTGACCTCCCGATCCGAAGCCAGCGATCGACCGGGCCGCGACGCGCGTCCTGCGGACAGAGACGGTCCGCGATTTACGCGGTTCCGAAAGCATCGCGGACAAAAGCCGTCCGCATCTCGCCTCAGTATGCGGCCCGGGCTCTTCGGTAGTGAGGCCATCTCCTACGCCCTGCCAAGGCGGTGACCTGCGGCTACGCGCCCTCGCGCCGAACAGTGGTAGGAAAGGGGCGGGAGGCATCGATGGCGTTGGGATTGCGTTACGATAACGGACTGGATCGCCGCAGGTCATTCAGT # Right flank : GACCGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 281-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000602.1 Marinitenerispora sediminis strain TPS81 scaffold_601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 280 29 100.0 32 ............................. CGGCGCCTGTGGCCGCTCATGCGCGATGGCCA 219 29 100.0 32 ............................. CACGTCAGCGGCGCGCTCCACCTCGGCAGCGG 158 29 100.0 32 ............................. TCCCGCATCTCCTGGACCCCCTGCAGCAGCGC 97 29 100.0 32 ............................. GACTTCTCGACGGGCGGCCCCGACGGCGGCCT 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : CACCTCGG # Right flank : GACCGCGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14-590 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000512.1 Marinitenerispora sediminis strain TPS81 scaffold_511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14 28 96.6 32 .................-........... GCTCTGCGGTCGCCGAGGTACTCCTTGAGGTC 74 29 96.6 32 ...........T................. GCCCTCTCGACGCTCAGGTCCGAGGGACTGGT 135 29 100.0 32 ............................. CCCGGACGGGTCGTCATCCGGGGCGTTCTCAC 196 29 100.0 32 ............................. AGATGATCAGCCCTCTGATTCAGGTCGACCAC 257 29 100.0 32 ............................. TGCCGCCAGCACTGGACGCAGTAGCCGAGATC 318 29 100.0 32 ............................. CAACTTTACGTTGCACTGCAACGGAACGTTGC 379 29 100.0 32 ............................. CCCCGGCCAGATGGTCGGGGCGAGGAAACGAG 440 29 100.0 32 ............................. ATGACCGCGGCGGACACCCCGGTGTACGCCGC 501 29 100.0 32 ............................. CTCTCGATGCGCTGGCCGAGGGTGCCGTGCAG 562 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GCCCGCCCCACGCACGTGGGGGTGACCCG # Left flank : ACCTGGCCCAGCCG # Right flank : GCGTCGGCG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCCACGCACGTGGGGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 3-214 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000650.1 Marinitenerispora sediminis strain TPS81 scaffold_649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. GACTTCTCGACGGGCGGCCCCGACGGCGGCCT 64 29 100.0 32 ............................. ACCGCGTCGCGCCATCAGGCCGCCACCTCGGC 125 29 100.0 32 ............................. CGGCGCCTGTGGCCGCTCATGCGCGATGGCCA 186 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CCAAGCCCCGCAGGCGCGGGGATGAACCG # Left flank : GCC # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1946-454 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000154.1 Marinitenerispora sediminis strain TPS81 scaffold_153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1945 29 100.0 32 ............................. GTTTACGCGTCGCCCAGTTCATCTTTGAGATG 1884 29 100.0 32 ............................. ATCGCGCGCATGACCGGGCTCACCGACAGGTC 1823 29 100.0 32 ............................. TGGCGCACCGAGCGCGAGAAGCGCCGCGCGGC 1762 29 100.0 32 ............................. CGCTGCGGACCATGGCGACGCCCCTGTTTCAG 1701 29 100.0 32 ............................. CTGGAGACCACCCGCTATTGGGACCGGCTGCA 1640 29 100.0 32 ............................. TCAACGCCGGTGCCGGCCAGGAGGTGCCGCCG 1579 29 100.0 32 ............................. GCGGTCCGCGCGCTCAGCGCGACCGTTGTTCG 1518 29 100.0 32 ............................. GTTCCCGGCCGCGGACTCCAGGCTGAGCAGCG 1457 29 100.0 32 ............................. GCCCACCCGGAGCTGACTCTGGAGCGGCACGT 1396 29 100.0 32 ............................. TTCGCGCGATGTTCGGCCGAACACCAACGGAA 1335 29 100.0 32 ............................. CGACTGATCAGAAGAGAAAGGAAGAGCGAATG 1274 29 100.0 32 ............................. GCGGCCTACGTAGACCTTCGAGGGTGTGAGCG 1213 29 100.0 32 ............................. ATGCGGGTTCCTCGACCAGGCGGGAAAATCCA 1152 29 100.0 32 ............................. TGCTCTCGCGCGAGCCGATGCTGCGCTCGCGC 1091 29 100.0 32 ............................. GCGGTCGTGGGGCACGACGAGTTCATCACCTA 1030 29 100.0 32 ............................. GACCTGGGTGTGGTGCTGGCAGGCGGGGCAGG 969 29 100.0 32 ............................. TGCCGGAGTCGTGTCGTGTCGCAGCGACACCT 908 29 100.0 32 ............................. CCCCTTGGGGCGGCAACTGTGCGCAGTGTCCA 847 29 100.0 32 ............................. GAGCCCGTCGGCCTTTTCCGGCGGCCGACCCA 786 29 100.0 32 ............................. GGCCGCGCCTGGTGCGGCGTGCACCGGGCGGT 725 29 100.0 32 ............................. GATAGGTGATGCGGGGGACAACGTCATAAGCT 664 29 100.0 32 ............................. CCGGCCGCGCGCCCGGCCAGCATCCCCGGCAG 603 29 93.1 32 .........C..................C CCCCGACGGGTGTGCGACCACCCTCGGGGCGT 542 29 89.7 31 ...T....................AC... GGGGAACGTGGACCCGCAGATTCAGACCCTA 482 29 79.3 0 .CC...T......C.A........A.... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.5 32 GTGCGCCCCACGCACGTGGGGGTGGACCG # Left flank : GCCTCGTCGAACTGTGGGACCCGGAACGGGGCAGCGTCGCCGGGGGCGTCAACCACGGCGACGACGTGATGTGAAAGGCGACCATGGCGAACATGGTGGTCATCTCGACCTCAGCCGTCCCTGCCCACGTGCGCGGCGCCCTCACCCGCTGGATGGTCGAGCCGAGAGCGGGCCTCTACGTGGGCACGCTCTCGGCCCGCGTCCGGGAGGAGCTGTGGGACATCGTCCAGGCAACCCTCGGCGAGGGATCCGCCGTCTGCATCCACCCGGCGGACAACGAACAGCGCTTCCTGGTCCGAACGGCGGGCCCGCAACGCCGGGAGGTCGTCGACTGGGGCGGGCTCCAGTTCGTGACGATGAACCCGGTGGAGGAGGAGCAGGTGCCTATTCCGGAGGGGTGGTGAATGCGGGGAGTAATGATGTGATTACAAGCATGCTCTGAGTGGGGTGTTTTCTGGTAAAGAAATGATAACGGGCTACGTCGTTGCAGGTCGCGAAGT # Right flank : GAACGCGACGGGCTCGTAGAGCTCGAACGCGGCGCCCGCCCCACGCACGTGGGGGACCGCGCAAGGGCTAGGATTCCTGGCCGTAAACGACCGTGCCCCCCATGTGCGGAGGGAACAGCTCAGGCCGCCGCCGGCAACCCGGTGTAGCGTTCGACGCAGGTGACACAGCCCCGCCCACGCCCCCGCTGTGGGCTACCTCGTTCTCCCCGGGTGGATTCGGCCGCCCGTGGCGCGGTAGATCGTGCGGGGGACCGGTGACGTCGGGAGGCCGGTCACGGAGCGGAGGCGGTGTTCGTAGGAGCCGTCCTCGGCGGGTGGGGGCGCCGGGGACTGGGGTCGGGTGGAGGCTCCGGGATGGGGGCGGCCGTCCATGAAGGCTTCGGCTACTGGGCAGCCGGGGATCGCGCGGACCGTGGTGGGCGGGGGTGCGGACGGCCGCGGGCCGGTGGGGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCACGCACGTGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 11289-12976 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000154.1 Marinitenerispora sediminis strain TPS81 scaffold_153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 11289 29 100.0 32 ............................. TTTCCTACGGTGAGTCGCATGCCCGCGAGTCT 11350 29 100.0 33 ............................. GAGGCGCGCACCCGGCCCGACAGATCGGCCGCC 11412 29 100.0 32 ............................. CCGGGCTCCGACGACGACCCGTTGTTCGCCGC 11473 29 100.0 32 ............................. GCTCTGCGGTCGCCGAGGTACTCCTTGAGGTC 11534 28 96.6 32 .....................-....... GCGAGGGGGTGACCGTGGCAGACGACGAGGAG 11594 29 100.0 32 ............................. GGCCCCGCGGCTGCCACCGCGAGGCCCCGATA 11655 29 100.0 32 ............................. CGGTCGGTGATCGAGATGCGGCTCGACTCGAT 11716 29 100.0 32 ............................. TGTCACAGCCGGCGTCACGCCGGCGTCACGGA 11777 29 100.0 32 ............................. TCATCGGCCGAGGGCGGACGCGCGGCAGCGGC 11838 29 100.0 32 ............................. GGCCCACCGGCGTCGAGCGGTTCCCCAACGAG 11899 29 100.0 32 ............................. GTCACCGACGCCGGCCGCGTCGACACGGTCGC 11960 29 100.0 32 ............................. TCCCCCGACTTCCGCGAAGCCGCGGGGACCAC 12021 29 100.0 32 ............................. TAGCGGTGGAACATCAGCCCGTCGCTGCCCTC 12082 29 100.0 32 ............................. TTCGGATTCGACACGTACAAGACGCAGAACAT 12143 29 100.0 32 ............................. TCGCGCCGGAAGATCGACGCCGCGATGGCCGC 12204 29 100.0 32 ............................. CTCGCGCGACTGCGACGGCTCACCGCCCGCCA 12265 29 100.0 32 ............................. GTGATGATCTGAGCGTGCATTGGTTCCTTCCT 12326 29 100.0 32 ............................. GCGGCATCGCTCCGGCGGTCGCGCACCAGGCA 12387 29 100.0 32 ............................. TCGTGCGCCGCTGGCCGGACGTCATCGCCATC 12448 29 100.0 32 ............................. CGCGCACCAGCTCGGGCAGGTTCGCCATGGCC 12509 29 100.0 32 ............................. GAGCTGTTCGTGTCCCCGTCGGCCCGGCTGCG 12570 29 100.0 44 ............................. GAGCTGTTCCCGCCCGTCGATTACGTGCCGGTGATCCGTGGCCT 12643 29 100.0 32 ............................. GCACTCGGCGTCGTTTCGCCGCGTTCCCAACG 12704 29 100.0 32 ............................. GCCCGCCGGGAGCGGGCCGCGCAGGACGCCGC 12765 29 100.0 32 ............................. TCGTGCGCCGCTGGCCGGACGTCATCGCCATC 12826 29 100.0 32 ............................. GAGATCCAGAACGCGGCGTCCATCATCGCCCC 12887 29 100.0 32 ............................. CGGACCGGGCGCTGGCCGAGGTCGAAGCGTGT 12948 29 89.7 0 ....C................A......T | ========== ====== ====== ====== ============================= ============================================ ================== 28 29 99.5 33 CTGAGCCCCACGCACGTGGGGGTGGACCG # Left flank : TCACCCGGGAGGGCGGACGGGTCCATTGCCTGGAACTCGTAAGTGATCTTGCCGATATCATGGAGCGCGGCCCAATGGGCCACCAGGAGACCGGCGTCATCGACATCCACTCCGAGCGCGTCGACAATGGTCAACCGGGCACCGGCGGCTATGTGGTCACGCCACAGCGCTTCGGCGGCAGCTCCGGCATCGAGAAGATGACAGATAACCGGATAGGTGACGCCTTCACCCAATCCATCCGATTTCCCCCACAGGCGAAGATCAACATAACCCTCGCGATCTTCACGCGAGGGAACAGAATCCTCCGACAAGGACCAATCCCCTCAGTCCAGCCCTCCCCGATACCGCGTAGATTAGCGACGAGGGCGGACACTTATCAGACTTTCACGAGAAAAATCATGCAACTACTTTCTGTCAGCGAATGGCTACAGCGACTCCCAACTGGCGGCCATTTCATGTCACAAATCAATAACGGCCCGCGTCGTCCCAGGTGAGGAAGT # Right flank : TGCGTGAGCTGTCCAGACGGATGACGTCGTCTTGTGAGCCCCACGCCACCCGAAACCACCCCGGAGCCCCCGCCTTCAGCTCCGCAGCCGGTCGAGCGCCCACTCCCGTCAGTGCCGGTCTACCCCCAGCATGGCCAGCAGGTCCGCTCGCAAGGCCACGAACTCCGGGGCCGAGCGTCGGCGTGGGCGGGGGAGGCCGATCGGCTGGTCCTGGGCGATCACGCCGTCGCGCATGACCAGCACCCGGTCGGCGAGCAGGACCGCCTCCTCTACGTCGTGGGTGACCAGGACGACGGCGCAGCCGTGGCGCTGCCAGAGTTCGGCGACGAGGTCCTGGGCTTTGATCCTCGTGAGCGCGTCGAGCGCGGAGAAGGGTTCGTCGAGCAGCAGCAGGTCGGGGTCGCGGACGAGCGCGCGGGCCAGTGCCGCGCGCTGGGCCTCGCCGCCTGAGAGGACCTTGGGCCACACGTCCACCCGGTGGCCGAGGCCGACTTCCTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 213-480 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000090.1 Marinitenerispora sediminis strain TPS81 scaffold_89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213 29 100.0 32 ............................. GCCGCCGGGGTGCGTCCGCTGCGCAGCAGGAT 274 29 96.6 32 ............................C CCGCTCCGCCTCGACACGCTGGCGGCGGGTCA 335 29 100.0 32 ............................. ACGCCGGGCCGGGTGCCGTGCACGATGTCGGC 396 29 96.6 29 ............................C TGGTCGTATGTCTGGTAGATCCGCAGGCC 454 27 82.8 0 .C........--.AT.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTGCGCCCCACGTGCGTGGGGATGAACCG # Left flank : GGGAAGCGGGGAGTGGGGTGGCGGCGGTCGAGACCGGCGGCGGTTCTGGGGTGTGCTGGGTGTGCCGCGCGTGTCGGTCCGCCGCATCTTGGGGGTGCGAGGTGTGGAGCGGCACCGGGTACGGCATCATGGCGGGGTGCTGGTCTCGCTGTTCGGCGCCACGAGTGGATTTCGTTTTGGTAACACCCTTGCTCCGCCCCAGGTCGCAAAGGG # Right flank : GCCCGCGCGCTTGAGCGGCACACCTTCCTCGGCTAATACGCCCCCGCCGGACCGGCGTGCCCCCCGGTCCCGGTCAGACACGATCGTGGAATCCGTCCCCCGTGCGAGCTACGCGCAGGTGTCCACCGCAAGGTGACGATCTCGGGCCGCTGGCTCCGTAGCGTTCTCGCTGCCGCGGCGCTCCGGTCGCGGATCCGGCGGAGGAGTCTTCATGAGGCTGGTCTGGCAATTCGCGGCCGTCGCGGCGGTCGCCTTCCTCGGCGGTCAAGGGGTCATGGCCGTGCAGGGAGACCCGTGGCTCACGCTGGCCATCGGCCTGCTGACGGCGGTGGTCTCCGTGCCCGTCTACCGGTGGGTGGTGCGGCGGACCGAGCGTCGCCCGGTCACGGAGCTGGCCGGAAGGGGCGCCGTTACCGCGACCGGCCTGGGGACCCTGATCGGCGTCGCGGTATTCGCGGCCGTCATCGTGAACATCGCCTTCCTCGGGGGCTACCAGGTCC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7135-5221 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEIN01000178.1 Marinitenerispora sediminis strain TPS81 scaffold_177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 7134 37 97.3 35 .......T............................. TGCTCCCCAGCGTCGCCGCAAGGACCGGCGCCAGG 7062 37 97.3 36 .......T............................. GGCTCGGCGACCGGCGGCTGCGGCCCGGCGACGAGG 6989 37 97.3 35 .......T............................. GCCTCCTGCCGCAGAGGTCGAGGGGGCTCGGACCG 6917 37 97.3 35 .......T............................. ACCGAGCGACTCGCGGCGGCCGAACAGGCAGCGGC 6845 37 97.3 35 .......T............................. CGACGCTTGGAGTTCGAGCTCGCGGGCCTCCCGGG 6773 37 97.3 37 .......T............................. CCCGGGATCTCAGGTCCGCGTAAACGGTGTCACGGGC 6699 37 97.3 34 .......T............................. GAGCAACAGGCCGGCTACCGGCTGTCGGGGGAGC 6628 37 97.3 35 .......T............................. GTTGCCGGCGGTCGGCCACAGCTCGATCGTGGCGG 6556 37 97.3 34 .......T............................. GGCCGGATGCAGTACCAGGACGACCGGGTCTGAG 6485 37 97.3 35 .......T............................. TCCGTCATGATGTCCACGATCTTGACCGTCTCCCG 6413 37 100.0 35 ..................................... TTGGGCTCGACCAGCCGGGAGCGGGTGCGAGGGTC 6341 37 100.0 36 ..................................... GGTGAACGCACACTCACGTCTCTGACCTACGCCGAC 6268 37 100.0 35 ..................................... GCGTCAAGAAACCCTGACAAGCGAGAGGAGTCGAT 6196 37 100.0 35 ..................................... GTGACGCCCTGGTGGCGCTGATTGAAGAGCTCAAT 6124 37 100.0 37 ..................................... GGCCCCTCGACGTGCCACGCCTCGCCGGCGCGAACGA 6050 37 100.0 35 ..................................... AGGGCTCCTCGTCTCGGTCATCTGCGCCCTGGCCG 5978 37 100.0 35 ..................................... GATCGAGGTCTACCTGGACGACGAGCTGGTGGAGT 5906 37 100.0 35 ..................................... CTCGGGGCTCATGCCTTCGGCCGTGGCCTGGGTGT 5834 37 100.0 35 ..................................... CCACCTCGTGCCCTGGTGACGTGCTGCGCGGCATG 5762 37 100.0 38 ..................................... GACTGTTCCAGCCTCATGCAGTACGCGTGGTGGCAGCA 5687 37 100.0 35 ..................................... TCGACTGACAGCCTCTCTGTCGCCGAGCAGGCGTA 5615 37 100.0 35 ..................................... TTGGAACCAGCACATCGACGCACTGTCGATATGCG 5543 37 100.0 34 ..................................... GCTGGATAGCCGGCACGGCATCGCCATGGTGCGT 5472 37 100.0 34 ..................................... GCCCCTCCTTCCGGAGCCGGTCGTAGGCATCCCG 5401 37 100.0 35 ..................................... GTCATCGACCACACGGCGTGGAGCGACGGCGACCG 5329 37 100.0 36 ..................................... CCGGAGAGCCACCCCGGCTACGACGAGGACGCTCCG 5256 36 86.5 0 .G............T....A-............T... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 98.5 35 GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Left flank : TCCTCGCCCGCCATCTGCGCGGGGAACTCTCCGACTACCTTCCTTGGATTCCGGCGTGATGCAGCTGCTTCTCCTCACCTATGACGTCAACACCACCACACCCGAAGGGCGGCGCCGGCTCCGGACGGTGGCCCAGATCTGCGAAGGGTATGGCCGGCGTGTTCAAAAGTCGGTCTTCGAGATCATCAGCGACGAGCCTGGGGTGTTGACGTTGATCGACCGCATCGGCCGCGTGATCGACGACGAGGCCGACAGCATCCGCGTTTACCGGCTTCCGCCTGACGGATTCACGGTGGTGCGCACCCTCGGGGCCGCCCGGGCGGTTGGGCACAACGACGCGATCATCATCTGATGAACGCCTTGGCCTCTGCTTGGGGACCTGAAGTGAGCAGAGAATCCCGGGGAGGTTCCCAAGCGAAAAACGGACGAAAGGGTTCGAATGGAAGCCGTGAGAACATGGGGCGCGCCTCAGCGTGGCGCATCTCCCCTGTTCAGGCGGC # Right flank : GTTCCGTGGTCAGGGTTCTGGTAGACGTCGGCGTGTGGCAGCCGCCCTTCGGGGATCACTTGCGATTGCGGCCTTTCGTCCTAAACACACGGGGCCCGTCGGACGCGTGCAGGTCAGGACGACTGGTGTGCAGTGACGACTGCTTCAAGAATGTGATCCGATGATGCGGGCCAACGCCTCACGACGCAGGCGTTCGTGTGCATCGCGCGCCGAACTCAACAACCGCAGGACTTGGCGTCGGTCGTCGTCCTGTGCTTCCGCGTACAAGACCGCCGCGCGCTGGAAGGCATGCATCGCCTCAAACATTTGCTGCACCTCGCGGAGTGTGAGGCCGAGGTTACTCCACGCCCCCGCTTCGCGATGAAGGTCGCCGATTTGTTGGTAGAGGTCGCGGGCGCGTTCGTGGACAGTGATGGCTTCGTCGTAGTGGTGGACGGAGCGGGGTGTGAGGCCGAGGTTGTTCCATGCGTCGGCCTCGCTGTGGCAGTCATCGATTTGTT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : GTGGCAGTCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //