Array 1 25211-26443 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACN01000003.1 Caldicellulosiruptor naganoensis NA10 N907DRAFT_scf7180000000024_quiver.12_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 25211 30 100.0 36 .............................. TTCTCTGGTAGTAATAATATTCTACAAACTCTATTT 25277 30 100.0 36 .............................. TCAGCATACTCTCTCCTGTAGCTGTGTACGTCCATG 25343 30 100.0 36 .............................. AAAATAAATTGTATATGGCAATCCCAGAAGGTGATA 25409 30 100.0 36 .............................. GCTTTTGGATTAACACGTGTTAGATTTGCATATGTA 25475 30 100.0 36 .............................. GAATTACATCATACCCCAACTTCCTACTCTGCGAGA 25541 30 100.0 38 .............................. CCAAAATCTACCTCTCTTAATCTTTTCACTACTCCTCT 25609 30 100.0 37 .............................. AAGTAAAAACACAGTGTGTTAAAGAATAACTTCGCAA 25676 30 100.0 36 .............................. GCAGGATAATTTTCTGGTACATCATAAGGCACAGGT 25742 30 100.0 35 .............................. GTAGAGCTCCAGCTTCGCCTGTAAGCTTCGCGGTT 25807 30 100.0 36 .............................. CAACACTAATATCAATAAGCTTCTTAACAGTCAATT 25873 30 100.0 39 .............................. CCTCCTTTCAAATACAACCTACACACGACCTATATATTT 25942 30 100.0 39 .............................. AAGCAACCTTGTAATGTTGGTAGTAGTTTGTTTTCGTTT 26011 30 100.0 36 .............................. TCATTAGGCATTGTCTCACCTGCCTTTCATCACAGA 26077 30 100.0 38 .............................. AAGTCACTTCAAACCTTGTTATATCCCTATCCTTAATA 26145 30 100.0 36 .............................. TAACCAAGCAGGGTCTCCAGTTGCACCCTGATACGC 26211 30 100.0 36 .............................. TATTTTTTGCCGTTAATTGGATATGATATTATTTCG 26277 30 100.0 36 .............................. TGATGTAAGCATTTTTTGATACTCCCATTTCTCTTG 26343 30 93.3 41 ..............T..............T AAAGTTCCTGCTGTTCCTGTATTAACCAAACTACCGCTTTG 26414 30 80.0 0 ..............G..G......A..GTT | ========== ====== ====== ====== ============================== ========================================= ================== 19 30 98.6 37 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : ATGTCTGGCACAACTCCCACTGCTGTGAAAACCTCATCATCACAGAGTATCTCAAACACTGTGTAGTTGTTCTCTAAGTTCTTGTATATTATATCGCTTACCATTCCTTTTATATCCTGAAGCATCTTTGATGTTTTATCCTCTCTTTGCAGCAGTTTATTTGCTAAATTATATATTACTCCAAACTAAGGACATTCTCAAGAAAACATTTTCTGCAGAATATATATGCACAACATATCGCATTATGTTTCATTTTGACTAAAAGTCATATCTGTCGACCTCCAGTTGCAAAATTTTGAGGCTTGATTTGTATTCGGTTTCAGGCTTGCAGTGCATGGATTAGATCAAATTGCTGGCAGCAGCTGGATAGACGGAAAAGGCTTATGTGCTTCTGTTGTTTGATTTTCCTCTGTTGAGATGACTTATCCACAGATGTTTTGATATAAAAACATTGACATGTGTGTATAATCTTGATATAATAAAATCAAGCTATTTAACGA # Right flank : TGGTTTTGTGTCCTGCCTGGATGCTGATAAATAAGCTCATTTGAAATTTTGCCATCTCTTGGGTATATTCAAGAGGTGGCTTTTTTGTTGCATTTTTCTTATGTGTATATTAATCTTATAACTATCAAAAACCACAAAGTGCAGGGTGGAAAAGATGTTGGACAAAGCATCTTTTAAAGTTGTTGAAAAGTTTGTCAGCATTGAAGGTGAAGGAATAAGAAGTGGGTATCCGGCCATTTTTATCAGATTTGCAGGGTGCAATCTCTCTTGCTCTTTTTGTGATACAAAATATGCCACTCAAAACCCTGAATATGACCAGATGGCTGCCCAACAAATACTCGAATATGCAAAATCAACAGGTTTTAAAAAAGTTACGCTGACAGGCGGTGAGCCTTTGATACAGCCTCATATACATGAGCTCATTGACGCTTTTATCAAAGAAGGCTTTGAAGTTAATATTGAAACAAATGGGTCTGTTGATATAAGAGATGTGAACAGAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 68186-69543 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACN01000012.1 Caldicellulosiruptor naganoensis NA10 N907DRAFT_scf7180000000025_quiver.9_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 68186 29 100.0 38 ............................. TTTCAAATATCCCAAAAGCTTGTTTATTATCCCTGTTA 68253 29 100.0 36 ............................. TAGATTATGATATGGGTGTCGTGCCAACGTTGCCTG 68318 29 100.0 37 ............................. TAAATCAAGAAAATCTTCAAACTTCATAACAATAAGC 68384 29 100.0 36 ............................. TTGAAAGTCTCAATATCAATAATTTCAACGCTTGGT 68449 29 100.0 39 ............................. TGATTTTGGTATAAGATTCATTGTTTGAATTCCTGAACT 68517 29 100.0 39 ............................. CTCAGGTAATTCTGAAAGCTTTTTCCCATGTAACTTTTC 68585 29 100.0 39 ............................. CTCAGGTAATTCTGAAAGCTTTTTCCCATGTAACTTTTC 68653 29 100.0 36 ............................. CTCAATCTGTAAATGTTTATGAGGTCTCAAAAAATT 68718 29 100.0 38 ............................. CACTGCTTAACCCCTTGTACTGCCTGTGTCCTCAACAC 68785 29 100.0 37 ............................. CGGACATTCCCATACTCTATCCTTCAATTTTAGTATT 68851 29 100.0 37 ............................. CTCCAAATCAACCGCTATCTTCAAAAGCTCATCATAC 68917 29 100.0 37 ............................. CTATGGTAGACAGCGACGGTGAGATAGGCCCAGCTAA 68983 29 100.0 37 ............................. CTGAACCTGTAACAAGGTTTGAGATAAAGCTTAGTTT 69049 29 100.0 39 ............................. CACTGTAGAGATAAATCATACATTATTCACCTCAACTAA 69117 29 100.0 39 ............................. CATTTTTCGTTGCTTCTCATACATGAGGCCTATTGTATT 69185 29 100.0 37 ............................. CTTTAAACTCCAATCATGAGATATAAAACCTTTATCA 69251 29 100.0 37 ............................. CGCTTCTTCTGCAGATTCATGAAGTATAAAGACATCT 69317 29 100.0 37 ............................. CCGATTTTGCACTTAGACACGAAAAGAGCTTTGCTGT 69383 29 100.0 37 ............................. CTTATACGTGCTGACAATGAAGCGTTCAAGGAAAGCA 69449 29 100.0 37 ............................. CAAATTTAAGTATGTGTTTATTTCTTCCACTGTCTGC 69515 29 93.1 0 ...........................TG | ========== ====== ====== ====== ============================= ======================================= ================== 21 29 99.7 38 GTTTGTAGCCTGCCCTTTGGGGATTGAAA # Left flank : TGACTTTTAATGCCTACAATTGATTTAATTTAATTATACCACTCATGCCCAAAGTACAAAATTGCAATTTCGCAATCATAATCATCTACTATTTCTTCTGCCACTTCGTTCAGCTGAGAAAACAGAAGCTGAAAGTACAAAGAAAGATCTGTACCATCACCAAATGTCCATCCTTCTTCGGGTATTTTTAGTACTGTCCAGAACAAACTATAATTATACATTTAGAAGGCCATTTCTTTGTATATATATCCATCTTGACTAAAAGTCGTTTCTGTCGACTTCCAGTGGCAATTTTTTGAGAGCTAAATTGTATTCGGTTTCATTAATGTAGAGTAAGGTTTTGTTTGGATTGTTGGCAGCAGCTGGATAGACGGAAGGCTTTGAGGTGGCTATATAGCTTGATTTTTCTGGCTTGATGTGAGTTTTCCACAGATGTTTTGATATAAAAACATTGACAGAGGTGCATAATCTTGATATAATAAAATCAAGCTATTTGACGT # Right flank : GCGGAAGAAGAGGATAAGAAAATATGTTTGATATTTCTCTTCCCATCTGCTATAATGTTTTCAGAATACCTTCTCAGGTGAAAACAATGAATAATAACCAGCTCCCTCATAACATAAACGACCTTGAGTACAAATACATATTCTCTAACAAAAGCATTTTCCTCAGGCTTCTGAAAAGGCTTGATGAGATTGGAATATTCAAAAACCTCACAGAAGACCAGCTTGAAAGAATTGACAAAAGCTATGTACTACCTGATTTTTCTCAAGAAGAAAGTGATTTGCTTTACAAAGTAAGCCTAAAAGAAAAAGAAATTATCTTTTACATTTTGTTTGAACACCAGTCTTCAGTTGACCATTCAATGCCCTTGAGGCTTTTGTTCTACATCACAGATATATACAGAGACTATATCAAGGATTTTGACAGAGTGGAAATAAAGAAAAAGGGATTTACATTGCCGGCAGTTGTGCCGATAGTATTTTACGACGGGGAAGACAGGTGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 71009-72560 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACN01000012.1 Caldicellulosiruptor naganoensis NA10 N907DRAFT_scf7180000000025_quiver.9_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 71009 30 100.0 36 .............................. TAAGATTTCACGATTTGCGTCACACTTTTGCAACGC 71075 30 100.0 36 .............................. CACTATGATTACCTTCTAACCCTTGAAAAACCTCAA 71141 30 100.0 37 .............................. TCGTCATCATAGTTTTTGCTACCTTTCATAACAACTG 71208 30 100.0 37 .............................. CTTTCATTTGCTTCTTTGTTGTAATAAGCATCTCTGT 71275 30 100.0 38 .............................. GTAACAATTAAAACATGACAATGTACATGCCAGCCTTT 71343 30 100.0 39 .............................. CAAAGAAGACAATACACATAACACCATCGAAACACGTGC 71412 30 100.0 34 .............................. GTAAAACCACTCCGTAGGTCTTCCTTTTTGTTGC 71476 30 100.0 34 .............................. GTAAAACCACTCCGTAGGTCTTCCTTTTTGTTGC 71540 30 100.0 34 .............................. GTAAAACCACTCCGTAGGTCTTCCTTTTTGTTGC 71604 30 100.0 35 .............................. ACAACCAACCCCGGTGGGGTAGGGCACATGTGGGT 71669 30 100.0 38 .............................. GCTTTCCTTTGATTAGCTATTGAACATCTCATACCCAG 71737 30 100.0 37 .............................. CTAAATGGATGAGCAATATAAACCAGTTCCACAATAA 71804 30 100.0 38 .............................. ACAACTTTAAAAACTGGAATCACAAGCATCCCTCATCA 71872 30 100.0 38 .............................. CCTGCATATGTGAATTCTTCTCCTAATTTTTCCACTAC 71940 30 100.0 36 .............................. TTTTTATCAACCTCCTTCATTTATTTTTGAGCCTTT 72006 30 100.0 35 .............................. AGACCTGGTCTGGGTCTACTGTGTTTGTGGGCAAG 72071 30 100.0 36 .............................. TGTTACTTACTCTAAATACTTTTGTTTTTTGTTGTG 72137 30 100.0 35 .............................. AAAAATAGACAGTATTTCCGCACATCTGCAAATCC 72202 30 100.0 37 .............................. TCTGAAAGCTTAAAGTTTTGCATCAAAAACCTGATAG 72269 30 100.0 35 .............................. CGACCATATACTTCTACCACAAGTTTTCTAGGTGA 72334 30 100.0 35 .............................. ACACCTCTAACACCCAATTTTTGCCTTCAAAAAGC 72399 30 93.3 35 ............TT................ CATTGTAAACAGTTGTCGGAATTGGCTGTCCTACA 72464 30 100.0 37 .............................. TAATTATTCCCTCCTTAACGATTTTGTATTTTTAGTA 72531 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.7 36 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : GAATAGAGACAGCTGAGAGGATGATTTTAAAAGGTTACAAAGATGAGGAGATAGCAGAGATTACAGGACTTTCGCTTGAGAGAATAAAAGAGCTTCGTGCAAAGCATAGAAATTGATTGAAATTTTGAAAAATATCCTTTTGCCACAAGCGTTTTTGGTGCTGCTTGTGGCTTTTATTGTTTTAGCAAGCAGCAGTAGAATAGAGATTTCACTTTTTGAGTTATTATTCAAAAGACAATTTATATTATTTCATTTTGACCAAAAGTCACATCTGTCGACCTCAGGTAGTAAAATTTTAAGGTTTGATTTGTATGCGGTTTCAAGAAGATTTGACATGGTTTTTGCAAAGTTTCTGGCAGCAGCTGGATAGACGGAAGGTTTTGAGGTGGCTATATAGCTTGATTTTTCTGGCTTGATTTAAGTTTTCCACAGATGTTTTGATATAAAAACATTGACAGGGGTGCATAATCTTGATATAATAAAATCAAGCTATTTGACGT # Right flank : CTTTTCTTTTGTTTTACAATAACATTTCAAACCAAATGTTCTGTTTGGTGTGCCTTTTGAAAATGCTTCTCTTTATGGAAGTGCCTTTTTGTCAGTTTATATTTTCCCTGTATATTTTTAACAAAACGGTTATAATAACCTTAGATAAAAAACGTTGGAGAACCTTTTTATGTCCAAGCTATCTCAAATGTATTTCTTTTGGAAAAACTCAATTACCCAGTCTATGGAAAGGTTAAACAGTAACATAAATGGGATATTTCAAGCTCTTTCTGGCTTTTATCAAAACATCGTGCTTACTTTTTGACACCTCCAATCCCCTGAAGAGTATGGAATTCTTGGCAGCTCTTTTTAGGCTACCTTCCACGGAGCGTCCGTCATCGAGCAAAATGATCTCTTTTAAATCTAACCTTTAGACTTCAACTTTCTCAAAAGATAGAAGATTCTTTACAAAAAAGAGAAATCAATCTTGTTGCAACAGATGCTACTTGTCCAAAATGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 3 82545-84310 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACN01000012.1 Caldicellulosiruptor naganoensis NA10 N907DRAFT_scf7180000000025_quiver.9_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 82545 30 100.0 36 .............................. GGTGTTATTTGCACAAATATTTTCTCTCTTGGGTTA 82611 30 100.0 36 .............................. TTGTAATGCTGCATTGCTACAATTGAGTCCAGATAT 82677 30 100.0 36 .............................. TTTTAATCTCTTGTAGTTTGAGAGTTCTCTTAGAAT 82743 30 100.0 37 .............................. TGTTCCTAGCACACCGTTTCCAGCCCAACCATCTGCA 82810 30 100.0 37 .............................. CAAAAAGTGTGAGCCCAAATCAATTATCACGGCTTCT 82877 30 100.0 37 .............................. ACCTAATCCTTACATGGACGCTTATACGTTCTATTAT 82944 30 100.0 40 .............................. TTGTCTATTGCTTGAAGCAAATCACTTCTTGTTATTTTTT 83014 30 100.0 37 .............................. CAGATGAGCAGGTCGAAATCTTAAGACATGAAATAAT 83081 30 100.0 36 .............................. TCTTTTTAGCTTCTTCATAAACTTATCAAAATCCCT 83147 30 100.0 37 .............................. TTCTGTCGAACTGCGTTATCAATATAATGTCATATCC 83214 30 100.0 38 .............................. TTCCTTTTTCACGCTACCATCTGGCATAGCCCAAACGG 83282 30 100.0 36 .............................. ACAATCTTGAACCTCAAGGAACATGGAAGTTTAAAG 83348 30 100.0 35 .............................. ACAATTGATATTAGAAATATGACACTAACTGAAAA 83413 30 100.0 32 .............................. TTTTTACGTTTCCATTATATAGCTCTTTGAGT 83475 30 100.0 36 .............................. ACATTCGCTCTTAAAGCACTAATATCTTTGATTTCC 83541 30 100.0 38 .............................. AGCTGTGTTTTCACTTGTTGAAGAGCTACCCGAACAAC 83609 30 100.0 36 .............................. TTTCTCTTGTAACTATCAAACTATGAACGTGAACAT 83675 30 96.7 38 ...........A.................. TTTCTTCGGCAATCCTTCAACATCGTTGATATTGAAAA 83743 30 96.7 38 ...........A.................. ACAGGTTTTCCACATATTTCACAATTCCCATATTTATT 83811 30 96.7 36 ...........A.................. GTATTAGTAAAGAGAAAACTTTCCTTCTGGTAGTCG 83877 30 93.3 38 ...........A..T............... GAGAGAATTGCTTGGAACACCATGAGCAGGTGGTGCAA 83945 30 96.7 37 ...........A.................. TAAGATACCGATGTTAGCTCAAGGCACTAACCACTTT 84012 30 96.7 38 ...........A.................. TGTCATAACCAAGTTTTCTACTTTGACTAAAAAACTTT 84080 30 96.7 36 ...........A.................. GTATACTTACAACGTTTGGAATTTCTTGTCAACTAA 84146 30 96.7 36 ...........A.................. ACGCACACCTGAGCCATACACCACAATCCTCATTTT 84212 30 96.7 39 ...........A.................. TACCTCAGCAACGCTTTTCCCAATCGCTTTGGCTAAATA 84281 29 93.3 0 ...........-.................G | G [84308] ========== ====== ====== ====== ============================== ======================================== ================== 27 30 98.5 37 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : TTAAACTCAACATCTTTACAAATTTCTTTTTCATTTTCTCAACTCCCCTAAATTTTATTTACAATTTGTATTTTATCTATTATTTTGGTTTTTTCAGTTCAAAAAATATGCGAAGTAGATTTCATGTTAAATTCTTTTACTGGGCTGCTTCAATTAAACTCATACTTGGTTGCCTATAACTACTCCGCAAAATCACAAGATGGGTGATTAACAATTTGTATTTTTAAAACACACAAATAGAATATAATTTCATTTTGACCAAAAGTCACATCTGTCGACCTCAGGTAGTAAAATTTTAAGGTTTGATTTGTATGCGGTTTCAAGAAGATTTGACATGGTTTTTGCAAAACTTCTGGCAGCAGCTGGATAGACGGAAGAATCTGGGGTGACTATATAGCTTGATTTTTCTGGCTTGATTTGAGTTTTCCACAGATGTTTTGATATAAAAACATTGACAGGGGTGTATAAACTTGATATAATAAAATCAAGCTATTTGACGT # Right flank : GAAAGAGCCTTCTCTTTGGAGATTGAGATGTTTGGGTTCCAATTCCGTATTGTCCTTTCTTTTAACTTCGCATAAAATTTGACCTTTCTTAAAGGTTTCAAACAAGTAAAATTTTAATTGTAAATTTCAAAATCGGCTGTTTGAAAGAAGGTCAGAAGCAGTTGGAAAAGGCTTTTGACATCAAAGGTTCGATTGTACAAGCATACATTGTTTGCAAAAGACAGGCGTGGCTTTTGTCGCGAAATATCGGTCCATCGTCAGACAATCCATTTTTGGAGATAGGCAAGTTAATATCGCAAGAGTATTACAAGAATGATAAAAAAGAAGTCTACTTTGACGGGGTAGTTTTAGACCTTATCAGGCAAGAAGATGAAGTCTTACTGGTTGGGGAAATTAAAAGATCATCACGTGCAAAGAATGCTGCAATCTTGCAGTTAAAATTCTACCTGTATAAGCTCTTTAAAAACAACATTAAAGCGCGTGGCAAACTTCTTATTCCT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 4 94586-95081 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACN01000012.1 Caldicellulosiruptor naganoensis NA10 N907DRAFT_scf7180000000025_quiver.9_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 94586 30 100.0 38 .............................. AGGGCTTTCGCGGCATAAACGGTTTCCCCCCCAGAGGG 94654 30 100.0 36 .............................. CGCCGCAACAACAAAAGAAATATTTGATTGAAAAAC 94720 30 100.0 37 .............................. ATCTTCAACTCTCTCAATCCCTAAATACAAGCTACTC 94787 30 100.0 36 .............................. TCTAAATCCATAGCCACTTTAACCAATTCGTCATAC 94853 30 100.0 37 .............................. ATTTCCCTCAACTTCTTCACTATCCCCTTCAACCTAT 94920 30 100.0 36 .............................. GCTTTTGGGTTAACACGTGTTAGATTTGCATATGTA 94986 30 100.0 36 .............................. TTCGTCTTGATCTCACCTCCTCTCTTGTTAAGCTTA 95052 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.6 37 GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : TCTTCTAAGCAAAATTATAAACCAATTTTTCCTTTTTTTAAACGCTTCTCGCTCTTCTTTTTGACAAAATTCGCAAAAAAATAAATTCTGCTTTTGCACAATATAGTTATAATTAGTTATTCTTGTAAACAATATGACTCCTAAATATCATCTACAGGGGTGATTGAGATGAATTTCTTTTTGCCGAAATACAACTTTCTGCTTATTTTATGATTATGCATATAATACATTAATTTTACGATTATATATTCATTTTGACCAAAAGTCACTTCCGTCGACCTCCGGTGCAAAATTTTTGAGTTTTGATTTGGATACGGTTTAATTTCGATATAGCAAGGCTTTGGCTTGATTTCTGGCAACAGCTGGATAGACGAAAGGGATTGATGAGGGTTTAGCTCTTGAATCTTCTGATTTGAGCAGCACTTTGATATGATGTACTGATATAAAAACATTGACACCTTTGCATAAAGTTGATATAATGAAATCAAGCATTTGAACGT # Right flank : CTTTTATTTCACTCCCTTTCAAACAGATTTTCCCACGCTTGTAGCCTGCACTAATGTTCAAACTTCGCAAAAAATTTAACTTTAACTCCTGCTTTTCCTATTCTATCATTAAGAGAGGAATCTTCCTTTTATAAGAAGGGGGAAATAACACATGTCTTCTATTCCAAAAAGTCCAAAGGAAGTCTACGAACAGATTTTATTTGAGTATCAAGCCTATTCAGAGTTTAAAAAACGAATAGAAGGAAAGTGTTACCTGCCACACGATCCCGAAAATGTCCTTTACCTGTACTGCACTTCCACTTTTAATGAAGAATATGAAAAAATGCTAAAAAGCAAACAGATTGAAAATTATATCGAACCGCAAAACGAAGAAGAGGTGGAAGACTGCTTTTTGGAAGAAGACGAATATTTCAAAGAAGAATTGGAAGATGACTTTGACCTTTTTGATGCAGACTATGAGATGTCAAGCGAAATGGACGATATTGTTGACGACCCTGATT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 5 107695-110933 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACN01000012.1 Caldicellulosiruptor naganoensis NA10 N907DRAFT_scf7180000000025_quiver.9_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 107695 30 100.0 36 .............................. TCCTAACGACTAAGCTTTGTTAACACCGCAAAGAAA 107761 30 100.0 34 .............................. CTTTGTATCTTCCCTGGGTATCCTGGTCTACTTT 107825 30 100.0 34 .............................. AACCAATACTACTCTGTGCTTTTAACCCACTAAC 107889 30 100.0 39 .............................. GCGCATTACTCTTCATCTTGAAGAAGATGGGGTCTAGTG 107958 30 100.0 36 .............................. TTTTTCCTTAAATCTCAAGTATTTCATTATTTCACC 108024 30 100.0 37 .............................. ATTCTAAATGTTTTTGTTTTATAAAATCCCTTTAGCA 108091 30 100.0 36 .............................. AAGCCATCCCCCTACCTTGCAACACTTCTGAAAAAC 108157 30 100.0 35 .............................. AAATTACAGCCTGTCCATTTCCCAGAACGACCTGA 108222 30 100.0 38 .............................. AAAAAATTTCCTTTTTCGTTACCGTTTGACGTTGCTTA 108290 30 100.0 38 .............................. ATGACTTTTTGACAATGTATTTGAAAAGATTAAATACT 108358 30 100.0 39 .............................. GTTAATTGTGCATTTTCTAATGGGAAAACGATTAAATTT 108427 30 100.0 37 .............................. TGCTATTTCTTCACCATATAGTTTCTCCATCTCCGAA 108494 30 100.0 36 .............................. AAGGATTGCTTGTACCACCGCTTGAAGCGTCATGAA 108560 30 100.0 36 .............................. ACTTTTTCAAATCCACTGTCCCATCCTGTGGAACGT 108626 30 100.0 38 .............................. CTTTATACATCTTCCCACTCCCTTTTTATTTTTTTTTA 108694 30 100.0 39 .............................. CCTATTTAGATTTTTTGATTCCTATTGTTTGTTTTTCGT 108763 30 100.0 39 .............................. CAAATTTTTTTTGCTAATTTAAAACTAGGATTTCGTGTT 108832 30 100.0 39 .............................. GTTAATTGTGCATTTTCTAATGGGAAAACGATTAAATTT 108901 30 100.0 36 .............................. TCGTTTTGCGGCAACAATTCTACGCAATGTACAATT 108967 30 100.0 38 .............................. GCCAAAAGTAATTCCTCATATTAATGTGCTTAACCTCA 109035 30 100.0 36 .............................. CAATAAAATTTGTGTATAAAGCCTTTATAAGCTTCA 109101 30 100.0 38 .............................. CACTACTGGGAGTAGGGCCAAAAGCCCTGCTCCACACC 109169 30 100.0 36 .............................. ACCATACTTTCCAGCTTTTTCATGTTTGCTTTTCTG 109235 30 100.0 38 .............................. AGTAATAGAAAGTTCTGGGACTTATTTCACATTCTTTG 109303 30 100.0 37 .............................. ATCTTTCCACTTTTATGTTAACCTCAAAACTGGTATC 109370 30 100.0 36 .............................. TCCCAAACGTCTACAACCGTCGTTCCTTTATGCGGT 109436 30 100.0 38 .............................. ACTTATGTAAACCATTCCAGAGATTTGCCAGCTTTTTA 109504 30 100.0 36 .............................. ACGCAATACATACTAACCCTGAAAAACTCAAACCAT 109570 30 100.0 36 .............................. CCAAGCCCGTTATAAAGCTCTTTGTTCCAAAAAATT 109636 30 100.0 37 .............................. AATTTTTGACTAAAACACACAAATAAAAAATAGCTAA 109703 30 100.0 38 .............................. CAATGCTCTTGAAGATGTTGATACAATTGACATCGCTG 109771 30 100.0 36 .............................. ACTTAAGAATTAAAAATTTTTAGGGAGACAGCTTAA 109837 30 100.0 36 .............................. ACTTTTCCAAATCCACTGTCCCATCCTGTGGAACGT 109903 30 100.0 38 .............................. AGGTTTTGACAGGATTTTTTACTTTTTGTTTTTGGCTA 109971 30 100.0 36 .............................. TCATAGCCCATCAGTTGCATAGTATTATAGTATCTA 110037 30 100.0 36 .............................. TTTCGTTTAAGAGCTTTTCTTCTAACTCCTTGCTGC 110103 30 100.0 38 .............................. GGCATTTCAAGAGTAACATATGCAATAACTCTTGCTTT 110171 30 100.0 36 .............................. CCTTCAAATTCATGCACTTTGTACGACACAACATAG 110237 30 100.0 38 .............................. TTGATATTAGTGTTGAGAGGGGGTTTTATGGAAAAGAA 110305 30 100.0 34 .............................. GATCGCTAATACCAGAAGTGGTTTGTGAAGAACT 110369 30 100.0 36 .............................. CTTCCAAATAAGCCCTATCTACAACAGCCTTACACA 110435 30 100.0 36 .............................. ACCATACTTTCCAGCTTTTTCATGTTTGCTTTTCTG 110501 30 100.0 38 .............................. AGTAATAGAAAGTTCTGGGACTTATTTCACATTCTTTG 110569 30 100.0 37 .............................. ATCTTTCCACTTTTATGTTAACCTCAAAACTGGTATC 110636 30 100.0 36 .............................. TCCCAAACGTCTACAACCGTCGTTCCTTTATGCGGT 110702 30 100.0 38 .............................. ACTTATGTAAACCATTCCAGAGATTTGCCAGCTTTTTA 110770 30 100.0 36 .............................. ACGCAATACATACTAACCCTGAAAAACTCAAACCAT 110836 30 100.0 38 .............................. CTTACTGAATTGCAAAATTAGCGACCTAGGGCTAAAGC 110904 30 96.7 0 ...........A.................. | ========== ====== ====== ====== ============================== ======================================= ================== 49 30 99.9 37 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TCAGAAACTAAAAGCAGGCAAAAGATTCTACTAAAAGCAGAAACTTTTTCTGTTTTTATATTTTTAATAATCTTTTTGTAACAAAAGCACCAGGCAGGACATTCTATCTCGCCTGTTTTTGCCTTTTTTAAGTTTTTCCCTTGCAAAATTTCTGTTGACTTGTGTGAAATGTTCATTTAAGTAAAAACAAGCAATGTGGCAAATACAGGTGATAAGTGAGAATTTATACAACAAACATGCATAAAACTAACATTTTGACCAAAAGTCATATCTGTCGACCTCCGGTGGCAAAATTTTAAGATTTAATTTGTATACGATTTCAGACTTGCAGCACGTGGATTTGACCAAACTTCTGGCAGCAGCTGGATAGACGGAAAAGTCCAATAAGCTTTTATCGCTTGATTTTCCTGGGCTGATTTGAGTTTTCCACAGATGTTTTGATATAAAAACATTGACAGGGGTGCATAATTTTGATATAATAAAATCAAGCTCTTTAACGT # Right flank : CTCGTTGTTTGCTTGTTTGTACTTTTTTCCATTTCTTTGTTTATAACTTCCTTTCTTTATAGGAGAAAAATAAGTTGGTACTTCGGTTGTTGTCAATAGCCCGTTCCTTGTGACCTTTGTCAGAAAGAAGATAAGAAAATATGTTTATGTTTGATATTCCCCTTTTCATCTGCTATAAGGTTTTCAAGAAAACTTCTCAGGTGAAATCGATGAACGAAAACCTATTTACTCACAACATAAATGACCTTGAGTAACAAATATATATTCTCTAACAAAACCATCTTTCTCAGGCTTTTGAAAAGACTTGATGAGATTGGAATATTTAAAAATCTCACAGAAGACCAGCTTGAAAAAATTGATAAAAGCTATGTGCTGCCTGACTTTTATCAAGAAGAAAGCGATTTGCTTTACAAAGTAAGTCTTAAAGAAAAAGAAATTATCTTTTACATTTTGTTTGAACACCAGTCTTCAGTTGACCATTCAATGCCCTTGAGGCTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 6 155588-155361 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACN01000012.1 Caldicellulosiruptor naganoensis NA10 N907DRAFT_scf7180000000025_quiver.9_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 155587 29 100.0 35 ............................. CCTTTTTGGTATCTTCTTCTATTACGACAAAATCA 155523 29 100.0 37 ............................. TTTCTCAATACTAATTTTTACAAGCTCATCTACCTTG 155457 29 100.0 39 ............................. AAAGTTGTTTCTTGCCTACCGACTGGGTTATCCTGTCTG 155389 29 86.2 0 ........T.T...G.............T | ========== ====== ====== ====== ============================= ======================================= ================== 4 29 96.5 37 TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : ATCTCCAACTGGTGATTTCTACCGCTATGTGAAATTTTCTTTCAGCCATAAGCTTATCTTGAGTTTATAAAAATTACAAAGACTGCTTTATAAACATTGCTATAAATACATGTCGCTTGTTTACATCAAGCTGTTAAATATGTAAAGGAGTTTAAACTTTTGCAATTTGATTGTATACTTTGAATTATTGCTGCATAAATAAGCATATATTTGAAATTAAAATTTATTCACATGCATATGCAAATATATTTATTTTGACTAAAAGTCATGTTTGTCGACCTTCAATGCAAAAATTTTGAGATTCAATTTGTATGCGATTTCATTTAGTCATAGCAAGATTTTTATAAAGTTGTTGGTAACATCTGGATAGACGGAAAGGTTCAATAGGTTTTCCTTGCTTGATTTTTCTGGGCTGATTTGAGTTTTCCACAGATGTTTTGATATAAAAACATTGACAGAGGTGTATAATCTTGATATAATAAAATCAAGCTTTTTAACGG # Right flank : TGTTCGTTACCAAACATAGGTACGATACTCTACTTTACGCATATAAAATTCAATTAAAGGCAGATAACCGCATTGGGTTAATTTGAAAAATCTGATGGGGATTTTGTTTTTTCATGGGAATTGTGTAATAGAAGCAGGGATGAAAAAGAGAATACCCTGAGTTGGTAAGAATCTTGTTAATCAAAAATACCTTAAGTATAAAACGTAAGATTGCAAAGCTGAAAAGAATGTACAAACTTTTATAACTTCTGCTTAAAAGGATTTGTTTACGGAGTAGAAAGCTAAAATACAGTAGGCCATCTTGACAAAGGAATCAGAGCATCGTTATTCCTAATGAAAAGATAAAAACAAAAGAAGTGTGCTAATTTATTTTCCTATGAATAGAAGGGGATAAAACCCAGTCTTTTGTACTCTGGTGTGTACAAACTAATATATTTGGTGCCAGATTTGCCTAAATGTTTAGTTGTGGCTTTAATTCCAACCGGGAGTAGAAAATTATG # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 7 240366-252936 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACN01000012.1 Caldicellulosiruptor naganoensis NA10 N907DRAFT_scf7180000000025_quiver.9_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 240366 29 100.0 37 ............................. TCGGATGTTTCGTTGAATCCACCAACGGGTGTACCTA 240432 29 100.0 36 ............................. TGCAATAGAAATACAACGCCTCCTCAATACATCCAA 240497 29 100.0 39 ............................. AATTTTGTGATTTGATAGTTAAGCGTTATTATGATGTTA 240565 29 100.0 39 ............................. TGGTTATGTCAAATTTATCTGGTATGAAGAAGTTGACGA 240633 29 100.0 36 ............................. GCAAGAATTATTTCTGCTGCAGCTGCACCACTCAAA 240698 29 100.0 38 ............................. CCTAATTGCAGATTATTAGCAATTTCAATTTTATCCAT 240765 29 100.0 36 ............................. TTCTCATCAGGAATCAATTCAAGTGTTTTGTTTCTT 240830 29 100.0 37 ............................. ATTTCTTTAGCTGAAAATATTTTCCGTGTAAATTCTA 240896 29 100.0 37 ............................. AACTAATATCGCACTGAGCCAAACAGGCAAAAATATT 240962 29 100.0 37 ............................. AGAGGTAACGTTGTTGTTGTATCTTGTACAACAAAAT 241028 29 100.0 37 ............................. GTGATTATGGGTGCTAAAACGTTGTCTGCACCAATGA 241094 29 100.0 38 ............................. GACATATCATTTCGAGGATGAGGATATTAGCTGTATTC 241161 29 100.0 36 ............................. TTCTGAGCAAACTTTTGAGAATCTTTCATTACAGAA 241226 29 100.0 36 ............................. ATCAAACGCTTCAACTCATGACGGGGTTATCGAGGG 241291 29 100.0 37 ............................. CTAATAATGAGGTGATTTAATATGTTTAAGCTTGAAA 241357 29 100.0 37 ............................. TGGGATGTATTAAACTAAGTATTAAACTAACAAAAGA 241423 29 100.0 35 ............................. ACAATTAAACAATACATCGAAGAAAGATTAAAACA 241487 29 100.0 36 ............................. TCTTGTAAGGAGGTGAGTATCAAATGGTTGAGGAAA 241552 29 100.0 38 ............................. GCGATTAACCGCTCGCTGTCAGCGTAAGTTTGTATGCA 241619 29 100.0 38 ............................. AGCTATGATATGAGCCTGTACGTCTTTAACGTTGTCTG 241686 29 100.0 37 ............................. TGCTTAAATCTATGTTAAACAATGATGTCTTTTCATT 241752 29 100.0 38 ............................. TTTTTACTAAAGCTGCCTTAATTGCTTTATTTGCAATG 241819 29 100.0 36 ............................. GATATATTTCATGAAATATATACAACCGTCGTCTTG 241884 29 100.0 36 ............................. GCTTTTTTGCAGATGATAGCTGATAGTAGCTTGAAG 241949 29 100.0 37 ............................. ATTCTTACCGCATACAGGTCTGTGAGCCCTGTTACAG 242015 29 100.0 36 ............................. CAAGAAGCTGTAAGAAAAATGTATACTGTGACTCTG 242080 29 100.0 37 ............................. GTTTGAATTGTACCTGCAGTTATTCCTTCTGTCATCA 242146 29 100.0 38 ............................. TATAACCTGTTCGTATTGTCTACCTAACTCCTGCGTGA 242213 29 100.0 36 ............................. AACATTAGTGTCGCTACAAAATCTTTGCAGTCTTTG 242278 29 100.0 37 ............................. TTATCTCTTAGCCATTGAAACAATCTATTTTGCCCTA 242344 29 100.0 38 ............................. ATATTTGTGTACATAAAACGCATTTAAATTGTTGCATT 242411 29 100.0 37 ............................. GCTGAGTAAAATATTGCACCTATTTCTATTAATTTTT 242477 29 100.0 35 ............................. TCGCCTTTGTGTTCCTGCCGTTCGCTACCTCCGTA 242541 29 100.0 38 ............................. TTACATCACTCGGCCACTATGTTGCCGGGTGTGTGTTG 242608 29 100.0 37 ............................. TTAGCACCCGGTCATATTCAATTAAAAGACACAAAGA 242674 29 100.0 37 ............................. TTTGAAAGCATAGAAGCACCCAAAAGAGACAAAAAAG 242740 29 100.0 36 ............................. GAGGTTAAACGAGCCGTTTGCTGTAAACGGGCAAGT 242805 29 100.0 37 ............................. GTTATTATCTCTGTGTTCTTAAGTTTCATTATTCTTG 242871 29 100.0 36 ............................. TTAGCGTTTGCGAACTGAGCATTGTCGAGTACCTGA 242936 29 100.0 37 ............................. ATTATTTTTAGTTCAAAACATTTTTAAGTGTTCTTGA 243002 29 100.0 37 ............................. GAAAAAGACAAGGAAGCGGTCAAACGCAAAATAGCTG 243068 29 100.0 37 ............................. AAATCCGATATCTAATGTTTTGGCAGGCAAGGAACAA 243134 29 100.0 37 ............................. AAGGTGTTGGATTTCAAAAATGAAGAATTTGGACAAG 243200 29 100.0 37 ............................. CTAAAATACCTCATGATAAGTAGCATGTGTTTCTTTT 243266 29 100.0 37 ............................. GTTGTTGTGTTTAGCAATGCAGAACTGCCAAACGTTG 243332 29 100.0 37 ............................. GTTCGCAGCATATCGTATACGAATTGGAGATTTGTAT 243398 29 100.0 38 ............................. GTGGGCCGTCTGGTCAGGTTTCACCGGTTTAGTGCCGG 243465 29 100.0 36 ............................. GGAACACACCGCCCTGGTAGTATATTTCTGTGTTAC 243530 29 100.0 37 ............................. TATAGTCATGTAACTTTTTCGTACAACAAGTTCCTTT 243596 29 100.0 37 ............................. CCATGTCCTTTATCCATAGCCCTAAGCCTGTAAGCTT 243662 29 100.0 37 ............................. AATGCTCGCTGGTCTCCTTTCGTTTTCTGCATTATCT 243728 29 100.0 36 ............................. TTACTACTTTATGATTTTTAACTTTGCTAGTACCAT 243793 29 100.0 37 ............................. AGCAGTGCTTGGCTTTTATAGGGTTTGAGAAAACCTT 243859 29 100.0 38 ............................. GTTGTTAAAGAGTATATAGTTCTTACTGAATTCGCCTA 243926 29 100.0 41 ............................. GTGAAACCTGACCAGACGGCCAGCTGGCCGTCCAACTCCGA 243996 29 100.0 37 ............................. AAATCCTTTGTCTTACCAACCTGTTTAACTCTTTGAC 244062 29 100.0 37 ............................. GCAAAACTATTTCTCCGCTCGGACCACAGTCAATTTC 244128 29 100.0 36 ............................. GTTCGCTGGGGGCAAATTGCTAACTATATAGAGGTT 244193 29 100.0 36 ............................. GACAGTTCTGACTTATATCCTGCACGCCACAAGCAG 244258 29 100.0 36 ............................. ACACAGAATTTTACACAGGCAGGTAATGAAGAATGA 244323 29 100.0 36 ............................. ACAGTAAACTGCAATGCATTGCTTATGAAAGACCTT 244388 29 100.0 37 ............................. ATATACTGCTCATACAACCCCTTGTTTTCTTCAAATG 244454 29 100.0 37 ............................. ACATACAAACTTGCAATATACTGGTCTGCAGCGTCTG 244520 29 100.0 36 ............................. ATTGCTGAAAAGTACACTAACTTGTGCCCCTGAGGA 244585 29 100.0 36 ............................. TTAGATTCGAATAAAGTTCAAATTTGGGTAGATAAT 244650 29 100.0 38 ............................. ATTTTTATTGGCAGGACGTTGAATGGGAATATACGCCA 244717 29 100.0 38 ............................. TATATTTAACCCACCTACACTTATAGTTGTCCATATAC 244784 29 100.0 39 ............................. ACCAATCACAGAAGGCGTTGAGTTGTTTTATATAGTTCA 244852 29 100.0 38 ............................. CTTGGTTTGTAGAAAAAAGCAAGTGGAAAATCCAAAAC 244919 29 100.0 38 ............................. CAAGCAAAATTAGCTGCCCACTTGGACCGCAATCGTAT 244986 29 100.0 37 ............................. CTCTTCAACTATAATGGTCGCTAACTCATCGGCTTTG 245052 29 100.0 36 ............................. GTGTGTGTCACTCGTTATTACGTATATCGCAATCTT 245117 29 100.0 37 ............................. AAAGATAGTTTCAACGCTTTCAAAACTGCTTCCTGAA 245183 29 100.0 37 ............................. TTTCAAGCAGGTATTGTTGCAATGACAAAAGACAATG 245249 29 100.0 36 ............................. ACGTTCATGCTGTACAATCGCATACGGCAGGTCATA 245314 29 100.0 37 ............................. GGCTAACCTCTAAAACATTTTTTTCTGGTGGTTTATA 245380 29 100.0 37 ............................. TTCTTTTACTTTTTTGTATCAGTGATAGTAATTATTA 245446 29 100.0 36 ............................. CCAAATAAAACCTCGTCCTGCGTCGCCTCTACAAAC 245511 29 100.0 39 ............................. CTTCTTTTTTGCTCTTCTAAAGGCTTTTATGCGCTTCTA 245579 29 100.0 36 ............................. CATAGATTCTTTTGTCAACACTTAATTTTTCACAAA 245644 29 100.0 38 ............................. GAATTTCGAGAAAAAGAGTTTTTAGCATTCATAGATTA 245711 29 100.0 38 ............................. ACTGTATTTTTGTTGCAGGGGCAGAAAGGCAATATATA 245778 29 100.0 38 ............................. ACGGCTCACATTGGTCCAAAAAGAAAACATATGGCTGG 245845 29 100.0 37 ............................. TACGGTATTAATTGCAGCTTTCCACTCCTAATCTGCT 245911 29 100.0 36 ............................. ATCTTATCGCCGAAAGAATCGACTGCAAGGCTATAT 245976 29 100.0 37 ............................. GAAATTTGATAATCCGGTACCTGACGATTGGGAACAG 246042 29 100.0 38 ............................. TTTTTCGTTAAAATACGAGGCATTTATGAACGTTTAAA 246109 29 100.0 37 ............................. ACACTGTACGCATTATGACCGTATACATGAGCTCCAA 246175 29 100.0 35 ............................. TATATCGAACTCAGCAAAACCTGTTGCTATATATA 246239 29 100.0 37 ............................. TGAAGGGCTAATCAATTTTGCGACACAGCAGATTGTA 246305 29 100.0 36 ............................. TATCTTATTCTCAAAGATTTAGATACTTTGATTTGC 246370 29 96.6 38 ................C............ CCAGTCGGAATTCGTATTCTGTCGAATGAAAAAGGTAA 246437 29 100.0 38 ............................. TTGATGCGAACAAGGAAAAACTGTATCGTTGCACCTTC 246504 29 100.0 38 ............................. TGTAATCGCATCTGCTGTAATGTTTTTAAAGTTGTATG 246571 29 100.0 36 ............................. GTGTTAAACCTCCATCTTCGGTTATCTCATATATTA 246636 29 100.0 37 ............................. ATTTTCATTGACAACAGGGAGTCTGTGACAAAGTTAA 246702 29 100.0 37 ............................. AATTAATGTTTTCTCGTCTATCCCTATGAGTCCGCAA 246768 29 100.0 39 ............................. ATGCCCAACCTGTGTCATGTAAATTGAAATAAACATCGT 246836 29 100.0 37 ............................. CTGTCTTACTTCAAATTTTTCCTCTTTTTCCAACCCT 246902 29 100.0 37 ............................. AAATCCCGTAACGTCTGGTAATGTTAATCATTATAAG 246968 29 100.0 37 ............................. GCAGTATACAGCAAACCCAGTTGGCGTGGGCGGGGCG 247034 29 100.0 37 ............................. ATATCACTAAAAGATTTCAAAAAGACATTAAGCGATT 247100 29 100.0 37 ............................. GCTATGGGAAAGACTACATTCAGCTTAAACATAGCGA 247166 29 100.0 39 ............................. TTTGTCTTTGCAATTTTAGCTTATCTCATAGCAAGCTAC 247234 29 100.0 37 ............................. TCGAGACTGTGACTTTCACTTGCAAGCGGTTCAAATT 247300 29 100.0 35 ............................. ACACAGGCTTGTTTTATAAACGCTTTATTCTTGGC 247364 29 100.0 37 ............................. ACGTGCCTGAGGATTGACAAAGGCTCATCAATTTCTT 247430 29 100.0 37 ............................. ATAATAGAAAGTCCTGGGACTTATTTCACACTCTTTA 247496 29 100.0 39 ............................. TTGCTGCTTGAAGTTTGAAGTAATCTTTTTTGTGCTCTA 247564 29 100.0 36 ............................. ATTTCAGCATATGGGTCATGTTCTGTATCGTCTCCT 247629 29 100.0 36 ............................. GGAGAAAAAAGTGTAATTCATTGTTTTACGATTCTT 247694 29 100.0 38 ............................. GAAAACGCTTATAAAAAAATTAGCTTTGCTCTATATCA 247761 29 100.0 38 ............................. CTTTTATGAGGTTGTTTAAGTCATCATAATAACGCTGA 247828 29 100.0 37 ............................. GGTTTTGAAAGCTGGGCAAGTTGGACAGGCAGCAGGC 247894 29 100.0 38 ............................. AAATAGTTGGTTTGAAGAAACAGTTGATGAATTAATAA 247961 29 100.0 37 ............................. AGCATTGACGCTTGGCTTATGTAGGGGTAGAGAAAAC 248027 29 100.0 37 ............................. GTTAGCTGTAATTACTACCAAGGCTTCTGGTCTGATT 248093 29 100.0 36 ............................. ATTGGTGGGCGCAGAAAGAGATTGCATAGGTATATA 248158 29 100.0 37 ............................. TTTCTAAACTTGACTGTTTTTCCTTCGTTCTTTGCTA 248224 29 100.0 35 ............................. TTTCATTGCCGCTTTTAGCATTTCGTCAAGCTTTA 248288 29 100.0 36 ............................. CAAGAACAGCAACAAAAAAAGCGGGGCACGACGCCC 248353 29 100.0 38 ............................. TTTTTCTGGGTTTTTCTTTCTGCTTTGTGCTATTTGGA 248420 29 100.0 35 ............................. CAGGTACATTTAATCATTTTGATACCTCCTTCTTT 248484 29 100.0 37 ............................. CAATGCCATGAAGCGTATTTATCATCGACAGTTTGTA 248550 29 100.0 37 ............................. AAACCTGTTTCATTTGTTGTCGGTAAAACCATTCAGT 248616 29 100.0 37 ............................. ATTCGTGAACCAGACGGAACTTTGAACGAGAATGGGG 248682 29 100.0 37 ............................. CCAGAAAGCTTATATCGTTATGCAGGTTTAAAACCAC 248748 29 100.0 35 ............................. GATTTAAACTGTGTTGAATGTTGCTATAATCCGCA 248812 29 100.0 36 ............................. TCAGATTATTGAAAAGTTGATTGATAAGCTTAAAAA 248877 29 100.0 37 ............................. TTCTTTTGCTTTTTCAGCGTTTTTTGCCGTTTTTTCA 248943 29 100.0 38 ............................. ACTAATTGCTCATATTGCCTTGTTCGCTCTGGATTATA 249010 29 100.0 36 ............................. CAAAGATTATTGAACAGGCTGAAAGCACAATTGGAA 249075 29 100.0 39 ............................. AGTTATTACAAACCTTGGCAGTATATTTGGGTGTACCCA 249143 29 100.0 40 ............................. CAAACACCTTTTGATTTTAGGTCTCTTATTATCCTAAAAA 249212 29 100.0 37 ............................. AATTCCTGCATCTCTTTAACCCAGTACTGACTATTCC 249278 29 100.0 36 ............................. TTTTTATTTTCCTGCTCTTTTCACTTACTATTATAC 249343 29 100.0 36 ............................. ATGCCCGGGCTGCCGTCGCTTTGCCCCTGAGCGTTC 249408 29 100.0 36 ............................. ATAGCTGGGAAGTCAAATTCCCGATAGGGAGACCTC 249473 29 100.0 37 ............................. TCGTTATTGAAATACTGCTATGGCCTAACCTTTCACT 249539 29 100.0 37 ............................. GGGAATTGACTTCCTTGGGTATCGTATTTGGCCAACA 249605 29 100.0 37 ............................. CTGGTATGTAAAAAAGAGGCTACACATCAAACCAGCC 249671 29 100.0 41 ............................. GACACGGATTTAAGCTGGTTATCGGTGGTTCTTTCAAGAAA 249741 29 100.0 36 ............................. GACAGTGAATTAGAGAGGTTACAGCGTTACGACCAG 249806 29 100.0 37 ............................. AAATTTATGCTAATTGCGAGTAAACTGCACTATTCAG 249872 29 100.0 38 ............................. GTAAGCTTTCAAGTTTACACTGACGCAGCGGATACTTG 249939 29 100.0 37 ............................. CTGATTATTGCAATTACTACTGCTGGCTATGATAGAA 250005 29 100.0 34 ............................. AATAGGGCTGGTCTTTATTTTTGTCTATCTTGTA 250068 29 100.0 37 ............................. ACATATTTCGGTAGCCCTCAGGTACCCCCTGAGCTAT 250134 29 100.0 37 ............................. ATGGTACAAAAACTGGCTGACGTTTTAAGTATGCTTG 250200 29 100.0 35 ............................. GTGTCAACTGGTGCTTGTCTTTGTGATTTCCCCTG 250264 29 100.0 38 ............................. CTGCAGGAATTTAAACAAAAATTCAACGTTTAAGGGGG 250331 29 100.0 37 ............................. AGGTGGTGAGATGATGTGGCGAAGTTTGATTGGGAAA 250397 29 100.0 36 ............................. GCATTGTTCTAAATCACTTGCACTCTAAAACTCTGG 250462 29 100.0 38 ............................. TCGCTTATCTCTCCATTGAAAAGTTTTGAGCTTACTTT 250529 29 100.0 37 ............................. GTGCCCCGCTGGTGTTATTTGATGCGAACAAGTATGA 250595 29 100.0 38 ............................. AACGGTTTGGGTAACGGTTTGGGGAACGGTTTGCCTAA 250662 29 100.0 37 ............................. ATTTATATTCCATTTTTGCTTGCTGTAACAACTGGTA 250728 29 100.0 37 ............................. GTGGTAAGGGCTATCTGGGTTTGTCGTTACAAAAACC 250794 29 100.0 37 ............................. AACGATGATAGAGAAGGAGTTTGGGAACATGCTGCAA 250860 29 100.0 35 ............................. ACTCCACACCTACCCTTTGTAGCCTTCCCTTTGGG 250924 29 100.0 36 ............................. TATCTTTCTCGTTGTCCCTTTGCAACTGTTTTTCAA 250989 29 100.0 37 ............................. AGGCCATTACGGTATCATCGTGATAACCCTCAGAAGC 251055 29 100.0 39 ............................. GTCTAATTTTTGTATCAGCTGGTAGTGTTGTTTGTATCA 251123 29 100.0 39 ............................. TTGAATGTGTTGAAGCGTGCTTGTTACAGTAAAATGAAA 251191 29 100.0 36 ............................. GCTGCGAACAAGACAGCGTATCAGGGTGCAACTGGA 251256 29 100.0 36 ............................. GCTGCATCTTTGATTTCTTCTATCTCGCTCATTCAT 251321 29 100.0 37 ............................. AAAGGTAGGCTACAACAGGCACGGGCTACAGCTTGTA 251387 29 100.0 37 ............................. GATGAGTTTTTCCTGTTCCAAAAGTGCCGACGAACAT 251453 29 100.0 36 ............................. TTCATGGCAGCAACCACACTGCCAACCCTAAATGGG 251518 29 100.0 37 ............................. AGGATGTTAACAGAGCAAACGCAGAAGCTGCAGAGTA 251584 29 100.0 36 ............................. AGCAGTGCTTGGCTTTTATCGAAGTCAGCGAAAACC 251649 29 100.0 37 ............................. GCGCTGAGCTGGGGTGCTTTGTTTTTTTGAGGTGTAA 251715 29 100.0 37 ............................. AACAGCGCAACACCGTTGCCCCAATTCGTTATTCATC 251781 29 100.0 39 ............................. ATTCCAGCCCAGCCCTTTTGTAAATGCCATCTGTGAACG 251849 29 100.0 37 ............................. GTGATATGGACTATCAGGATTCGTTGCAGCGAACACT 251915 29 96.6 38 ............................T ACTTAACAAAGATTGTTATTTTTGTACCTTCTTGTCTT 251982 29 100.0 38 ............................. GTTTGAGCTTGCGGTAGGAAAATTGGTAGCTCTAAGAG 252049 29 100.0 36 ............................. ACACCAAACTGTTTTGACATGAAGATGATACCTTGG 252114 29 100.0 35 ............................. GCTTAGAAGAGGAAGCACGCTTCTTTTGTCAAAAG 252178 29 100.0 37 ............................. ACGTGCGCAAAAGAGTGGACTTTGCAATGGCTGGCGA 252244 29 100.0 39 ............................. ATAGACGTATTCAATGTAAGATTTTCTCATTCTTTTCTT 252312 29 100.0 36 ............................. ATTGATACTATCGGTGCACATGCAAAAGGATATAAT 252377 29 100.0 36 ............................. ACGCAAAATACAGCAAGTTCTTCTTTGCTAACTTGT 252442 29 100.0 38 ............................. TAAGTTGTTCAGCGTTAATAAGTTGTGGTTTGCTTTCA 252509 29 100.0 37 ............................. AATTATAAAAGAACTCAATGAAGAATTAGAAAATAAA 252575 29 96.6 37 ............................A CGCACAATGCCAGCTGTGAGGTCGCCAGCAAGGTCAA 252641 29 89.7 37 .............C.........A....T CTGGCAGCAACAGATGTTGTTACTGTTAATGGTAAAG GG [252659] 252709 29 93.1 36 ...........G.......T......... AACTTTCTTCAGTGCATATTTCATTCTTGCTGTCCA 252774 29 96.6 37 ...........................G. ACAAAGTTCTTCTGGGCAAAGCCTTACATAAGTATTC T [252789] 252841 29 89.7 38 ....................A..A...G. TTTGTTAAGGCAGTTCCTTTAATCTCTTTATAAACATC 252908 29 69.0 0 A........T.T....C.ATA....G..T | ========== ====== ====== ====== ============================= ========================================= ================== 191 29 99.6 37 GTTTTATCTGAACTATTAGGGATGTAAAC # Left flank : TAGAGGTTAAGTTGTCAATAGGGTTTTTAAAGACCATCTTAAGGCATGAAATGGCAAAGTCTATCCAAAGGACCTCATAAAAGTTATTTATCATGGCTCTGAAAGAAAACACAGGAGAGTGATTTGAGCAATTTGCAAGAGGAAGATGAAAAGTATGGTTCGAATAGAGAGGACTACGACGATAAAAACGAAGAAGCAATTTTCAGAAAAGAATTTGTAGGAATTCTTAATAACAAAAAGCAAAATAAAAACAAAGCAAGTTGCAAAAAATACAATGACAGTTAAATAAATACTATTTGGAAATTTTAGTTATTTTGCAGCGAACCTAAAAATAAATGCTGAAGGTAAATATTTTGTCAATCCTGCAAAAGAAGCTAATTTGTCATTTACATCCAAAACCCAACTTGACCTTTGCTGCAAATAAAATTAGTTGCATATCGAATTACAAAAGGGTATAATTATAGACAGTAGCTGGTTTATGAGTTTTTTTAAAAATGTGG # Right flank : TAATCCTTTTACAGTTCCAGCATTGGGTAAAAAATTTATTTTGAGAAGAAGGATTTTTACAGTTAATGTCGAAATATAATAATCAGTGCAGATTGATGTAAGAATTACTTAAAAAAGGAGAGATTGTTTGAGATGAGAGCAAAATTTATTTTTGAAGTTCACAATATCCAGCAGGAGACCAAGGAACTTCCTGTTTATTACAGAACACTTTTTATGGGTTTTTTAAAGAAAGCATTATCTTTGTACAATGAAGATTATTTCAATAAGCTTTACTGTTGGGAGGATAAGAAGAATAAATGGCAGAAGCCTTTTGTTTTTGCAGTAAATTTACCAAATATGAATTTTTTAAACGATAAAGTGCTGTTCAAAGGCGATATAGTTTTGAATATTTCGACTTCAGATTATGAGTTTTTTGTAAATATCTACAATAGTCTTGTTAACCACAAATTGTATCCTCATAAACTTTCTGATAGTTGTCTTGAAATAACTCTCAAAAAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATTAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //