Array 1 5325-6817 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIQ01000133.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5325 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5386 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5447 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5508 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5569 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5630 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5691 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5752 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5813 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5874 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5935 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5996 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6057 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6118 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6179 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6240 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6302 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6363 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6424 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6485 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6546 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6607 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6668 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6729 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6790 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 29974-28009 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIQ01000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29973 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 29912 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29851 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29790 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29729 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29668 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 29607 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 29545 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 29484 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 29423 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 29362 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 29301 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 29240 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 29179 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 29118 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 29057 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28996 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28935 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28874 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28813 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28752 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28690 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28587 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28526 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28465 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28404 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28343 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28282 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28221 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28160 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28099 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 28038 29 96.6 0 A............................ | A [28011] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 183-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIQ01000025.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 121 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GAACCGCTGGCGGGCTGATTGGTCTGCAACCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //