Array 1 108714-106851 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLP01000002.1 Salmonella enterica subsp. enterica serovar Ekotedo strain CFSAN059902 CFSAN059902_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108713 29 100.0 32 ............................. GGCGTTCGCGTAGACGTCACGCTCAGTAATTA 108652 29 100.0 32 ............................. CGCAGGCTGTTTGACGGCGGACACGTACACGG 108591 29 100.0 32 ............................. CCGAAATACGATGCCGGAATATCGTAAACGGA 108530 29 100.0 32 ............................. GAGGTGGCTGCATTAATTAACTCCCGCGCCGG 108469 29 100.0 32 ............................. CAGTGGCAGACGGGCGACACCGCGCCAGATTA 108408 29 100.0 32 ............................. CGCCGTCGTGCGTGAAAATCGGGTTAATGGGG 108347 29 100.0 32 ............................. AAGCAGATACCGTAGAGAACCAGAATCAGGCT 108286 29 100.0 32 ............................. TTGTTACTTCTTCTCTGGCTGTTGCTAGTTAT 108225 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 108164 29 100.0 32 ............................. TATACACGGCACTATTTGGAAATCAGGCGGGA 108103 29 100.0 32 ............................. GGTCTGCTGAAACGGTTACCCCGTTATCGGTA 108042 29 100.0 32 ............................. TATACTCGTTGCCGATCAACGCATATTGATCA 107981 29 100.0 32 ............................. ATGCGGAACTATATCAGGAAAATCTTAAAACA 107920 29 100.0 32 ............................. ACTTACGTCAGCGCGCCGATTTGGTGCCGGAG 107859 29 100.0 32 ............................. ATCTCATAGCGACGATTTATACCTATTTAGCT 107798 29 100.0 32 ............................. TGCGGCCAGCATCGCCATTTCTGACAACAGCA 107737 29 100.0 32 ............................. GCGGAGAGGGTGGGGATAATGGAGCAACTGAT 107676 29 100.0 32 ............................. TCACGGAAACGATCGCCTCATCATTAAAGTTA 107615 29 100.0 33 ............................. ATTCGTTAATTAAATATGACGGCAATCAGCAAC 107553 29 100.0 32 ............................. GCTGGCCGCTGTTTCTTGTCTCCCCGTCCTGG 107492 29 100.0 32 ............................. CCAGCGGCGATAATTGCTCTTTCAATATCGCG 107431 29 100.0 33 ............................. GACATTTCATCCGGGGTTATTTGCCATTCACGG 107369 29 100.0 32 ............................. CCGGGGACGTATCGCGGAATATCTCAGATTGA 107308 29 100.0 32 ............................. CTATATCTTCTATCGCGTCCGACGCCGGGTGT 107247 29 96.6 32 ............T................ TATCCACATCGACAACAATCACCGCACAGTGA 107186 29 100.0 33 ............................. AGCGAGGACGAGTTTAACGCGCGGTTCCCCAGC 107124 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 107063 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 107002 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 106941 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 106880 29 96.6 0 ............T................ | A [106853] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCATTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127676-124961 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLP01000002.1 Salmonella enterica subsp. enterica serovar Ekotedo strain CFSAN059902 CFSAN059902_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 127675 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 127614 29 100.0 32 ............................. GCGGTTTCTCCGTACGAATCATCAGTAATTCC 127553 29 100.0 32 ............................. TTTGATTGTGCGGATTGACCAAAAGCCGCACC 127492 29 100.0 32 ............................. CTAACGATCAAAAATACGAGGTTTGGCACGAC 127431 29 100.0 32 ............................. TTGCAGCTGCAATTGGAAAACACTGGCTCGAT 127370 29 100.0 32 ............................. CCCTGTGCGGTGTACATGCGGTACGACGTAAA 127309 29 100.0 32 ............................. AGTCGGCTTGGACGTTGACGGCACACCCTTCC 127248 29 100.0 32 ............................. GACTGGAGAATAACAATCCCCCCGACACACAG 127187 29 100.0 32 ............................. ACAATACACTGAAACTGGCCAGCGACATGGAA 127126 29 100.0 32 ............................. AGTTTACTCCAGATATGACAATGCGCCGCTGG 127065 29 100.0 32 ............................. TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 127004 29 100.0 32 ............................. GGCGCGGGAAATGGGTTTTAAATATTATCGCT 126943 29 100.0 32 ............................. TCAGACTCCGGTCAGAATTGCATAGTCGTCAG 126882 29 100.0 32 ............................. CCAGCATCAGGCAATCAACCATCACCAGAAAA 126821 29 100.0 32 ............................. ACGACATCGCGCAGGCTATCTGGACGGCGGCA 126760 29 100.0 32 ............................. AGGCCTGATTATTCACTGCCTGCCAGTGTTTT 126699 29 100.0 34 ............................. GGGTGTTTTGGAAAAGTTCGGGCCAAATCTCGGG 126636 29 100.0 32 ............................. TCCATTGCCCGCGAGATGCCGGTTACGCAGGA 126575 29 100.0 32 ............................. ATGGCTGGTTCGCTTGCTGCATCCGGTATGCA 126514 29 100.0 32 ............................. CGTGTTCTCGGCGAGTGGTTTTTTACGTCCAA 126453 29 100.0 32 ............................. TTAACAACTGCCGCGCAGATGATCGGGAAATT 126392 29 100.0 32 ............................. TGCTTACGGAGCGCATTTTCTTTGCCTTCAAA 126331 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 126270 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 126209 29 100.0 32 ............................. GGATCTGTATCCCCTGCAATAGCGGTCACATG 126148 29 100.0 32 ............................. GCTAGGGTTAAACAGGTAACAATATGGGGCGA 126087 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 126026 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 125965 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 125904 29 96.6 32 ............T................ ATTATATAAAAGGCGGCGGCAATGACGGAGGT 125843 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 125782 29 100.0 32 ............................. ACACCAGCTACCGGCGACGCCTGCAGGCTGCA 125721 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 125660 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 125599 29 96.6 32 ..A.......................... CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 125538 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 125477 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 125415 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 125354 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 125293 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 125232 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 125171 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 125110 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 125049 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 124988 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================== ================== 45 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTGGC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGATCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //