Array 1 29174-27620 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXX01000009.1 Salmonella enterica subsp. houtenae serovar 50:g,z51:- strain 74-1022 NODE_9_length_138297_cov_3.86969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29173 29 100.0 32 ............................. CAACGCCCTGACATTCTCACGCCCGCGCGAAA 29112 29 100.0 32 ............................. GGACTTCCCACTCAAAAACAATTCCTACGTTA 29051 29 100.0 32 ............................. TTAGCGGGTTAGGGTATCTCACAGGGAGAATG 28990 29 100.0 32 ............................. AGCAGTGGAAAGTTGAGGGATTTCAGCCCTAT 28929 29 100.0 32 ............................. CATTCAACCAGTTTGGTGGAGCGTTGAAGTTG 28868 29 100.0 32 ............................. CGGGCCGCACTGGCGGCCCATAGGTATTACGC 28807 29 100.0 32 ............................. TGATTTTATAAAATTCTGTAAACGCAGTTGGC 28746 29 100.0 32 ............................. GCGACCTAAGCCGCGCTCAGTTGCTTAGCCAT 28685 29 100.0 32 ............................. CGGTCGCCATTTGTGGGCAAGATTTTGCGGTA 28624 29 100.0 32 ............................. TAGTAACTAAGGTAAATCATCTGTGTCCGGCT 28563 29 96.6 32 ............................A ATAAATAAATGTGTACCACATAATAACAGCAA 28502 29 100.0 32 ............................. CTGCGTTAATATTACTCATTGATTAGCATCCA 28441 29 100.0 32 ............................. GATTTGCGCAAAAAAATATTTAAGACGCTTGC 28380 29 96.6 32 A............................ GATGTAGCTGAACTTCTGGAGGTGCTGAAATC 28319 29 100.0 32 ............................. CATCCAATGTCCAGACACCCCAAATCACTGTA 28258 29 100.0 32 ............................. GTGGTGAGAGATTGTCGTCTGATGTTGTGGCT 28197 29 100.0 32 ............................. CGCCCGAAATTGCCGGATAATGCTTCATGTGA 28136 29 96.6 32 ............................A GTAACGCGCCTTACTTCTGAACGTGATAAATA 28075 29 100.0 32 ............................. CCACCCACCAGCCCAGCGCCAAAACCGCCACC 28014 29 100.0 32 ............................. GAATGCTTAAAACGCCGGATGATTTAACCGGA 27953 29 100.0 32 ............................. AACAACCAGTAACAGCAGTACAGAGAACGCCC 27892 29 100.0 32 ............................. AAACTATTTCTGGAATGCAGGAAAAAGACCCG 27831 29 100.0 32 ............................. AGACAGAAAAGACCCAAGAAAAAAACATGGAA 27770 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 27709 29 93.1 32 ................T...........A GAATGGCGCTAGTTCGTCATATCAATGTGAAT 27648 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCCGGTTCCTTTTAGCTCTTGCCCTAACCAGCCCTCTTCTGCGTGCTCTTGCCATTCCGGGGCCAGAATATGCAATATGGGCGGCTGGCGACCGTCGGGCAGCGCGGATTGACGTTGCCCGTGGGCGTCGCGAATATGTCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGGGCGAGATCGGAGATCATCCAGTCAAAATCCAGATCGAGGCTCTGCTCAACGACCTGTGTAGCGATCAATACTTTACCCCGTCGTTCAGATACGGAAACATGATTGCCAAACCAGCTTAACGTTTTGTTTTCAATGGTAATACGATCGGTAAAGGCAAAACGGCTGTGGAAGAGTAAAAGATTTTCCTCCGGTACAATCCCTTCATGCAGCAGTTGCTGATAAATATCTCGTGCATCGTCAACTGTATTGCGGATCCAGCAAACGCACTGCCCGGCGGCCACCACGCGGTAAATAATGTCCAGCGCTTCCCGGCGTTGC # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //