Array 1 219927-221297 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPO01000002.1 Salmonella enterica strain BCW_4858 NODE_2_length_403031_cov_1.86709, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219927 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 219988 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 220049 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 220110 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 220171 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 220232 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 220293 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 220354 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 220415 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 220476 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 220537 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 220598 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 220659 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 220720 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 220782 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 220843 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 220904 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 220965 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221026 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221087 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221148 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221209 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221270 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237430-238540 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPO01000002.1 Salmonella enterica strain BCW_4858 NODE_2_length_403031_cov_1.86709, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 237430 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 237491 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 237553 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 237614 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 237675 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 237736 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 237797 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 237859 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 237962 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 238023 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 238084 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 238145 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 238206 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 238267 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 238328 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 238389 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 238450 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 238511 29 96.6 0 A............................ | A [238537] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //