Array 1 376-86 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSWC01000051.1 Clostridium tetani strain CN655 Scaffold12.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 375 30 100.0 34 .............................. TAGAAATATTTATAAGCTTCCTTTAAATCTCCAA 311 30 100.0 34 .............................. CCTAAAAGAGATTATATAAAAAAGTGCAACTCTT 247 30 100.0 36 .............................. CAACATGAAATTATTGTGAAGTAGGAATTTGATGTT 181 30 100.0 36 .............................. TTAGATTTTTTATTTATATTTAAAGAAAGTGCATCC 115 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TCTTAATTTTAAGAAACCTTGATTTTACAGT # Right flank : ATATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 394-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSWC01000057.1 Clostridium tetani strain CN655 Scaffold12.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 393 30 100.0 36 .............................. TCATTCATAGCATTGTTAGCAAATTGTGTAGCATTC 327 30 100.0 34 .............................. TTTATCTTACCCCCAAATATAATCTTTAGTCGAT 263 30 100.0 34 .............................. ATGTTTTCACTATATTACCACTTCCTTTTATTTT 199 30 100.0 34 .............................. GCAAATTCTATTATTTTAAGTGATTTCTCTATAT 135 30 100.0 35 .............................. AAAGGAATGTAATTTAAGTTCTAGAAGTGCAGCAC 70 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : CTTAATTTTAAGAAACCTTGATTTTACAGT # Right flank : ATATACATTAAAAAACCTTAGCCATGTCGTTTAAACCCATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 16432-15814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSWC01000047.1 Clostridium tetani strain CN655 Scaffold17.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16431 30 100.0 36 .............................. TGAAAAACAGTAACATGAGTGTATTCATGTTACTGT 16365 30 100.0 34 .............................. AAATACGGAACTATTGTAGTTCTACAATTAGGGT 16301 30 100.0 36 .............................. TTAAGATTTACTTCATTTCCCCAACAGTCCCAACCT 16235 30 100.0 35 .............................. GTTATGCTGCAACTATGTGCTATGGTTGCAAGAAA 16170 30 100.0 36 .............................. TTTATATTTGGATTAACAGTTGTTAATTTAGCACCA 16104 30 100.0 34 .............................. TAATATTTAAGTTTTTCTCGAACCTCTGCAAAAC 16040 30 100.0 34 .............................. AAAAATAAAAAAAGAGGTAGCTCCTAGCCTAAGC 15976 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 15910 30 100.0 37 .............................. AAGATAATGAATACCAACCAGAAGAAGCAGCAAAAAC 15843 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TCTTAATTTTAAGAAACCTTGATTTTACAGT # Right flank : AACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2195-1774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSWC01000048.1 Clostridium tetani strain CN655 Scaffold37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2194 30 100.0 36 .............................. TCCTTTGAATATCTTTGAAATATGGCTATTGCATAT 2128 30 100.0 35 .............................. ACTAAATCCACATCTTTGTATTTATCTTGTAGCTC 2063 30 100.0 37 .............................. AAATATATATGAGCATAGCTCAAAAGGAGAATTAATA 1996 30 100.0 35 .............................. TTTTGTAAGCATTCATTATCGTTGTTAAAACATCT 1931 30 100.0 34 .............................. GAAGTTTGCCGACCTAGATTGATACGGAACACAC 1867 30 100.0 34 .............................. ATTGCTGTAAGAGAATATATTTTATCTGGATTAA 1803 29 90.0 0 ................-.A...T....... | T [1790] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : CTTAATTTTAAGAAACCTTGATTTTACAGT # Right flank : AAATCATTTTGAGAATATACATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGAGAATAGTTTATTCCTCTCCATTAACATATAATATTTGTCCTGATAGTGGGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATTGATGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCTCATATGCCACACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGCGATTTCATTAAAGGTTAAATTATTGTAATATCTTAAGATTAAAAGCTAGTCATTTTCAATTACTATAGAATTTACTAGTTTATCATGAAATCCTTGATTACTATCATTAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 32334-32963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSWC01000034.1 Clostridium tetani strain CN655 Scaffold4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 32334 30 100.0 36 .............................. TTAAATGAAGGTACTAAATTTAAGGTAAGAATGGTG 32400 30 100.0 36 .............................. AGCATTCCTCTATCTCCATTAACTACTGAAAAAGGA 32466 30 100.0 36 .............................. GCTATAAGAATAATTCTAATTTTATCCAAGGAACTG 32532 30 100.0 38 .............................. TTCCAATTTTACTAGCTGCTACCCCAACGCCTAATAAT 32600 30 100.0 37 .............................. TAAATATATTACTTCCTTCTTGCACTGTAGGTTTTTC 32667 30 100.0 35 .............................. TTGTTCGTAACTGTTAAAGCTATCTTTCTTTATGC 32732 30 100.0 37 .............................. AGAGCCTAGTTTCCTAAGCCCTTATAACCAACTTACC 32799 30 100.0 39 .............................. ATACAATGCTCCATGGAAAGGACTCCACTTAGATATATA 32868 30 100.0 36 .............................. CCCACATCATTAAAGGATATAAAATTACCACCTTCC 32934 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 100.0 37 GTATTAGTAGCACCATATTGGAATGTAAAT # Left flank : AAGAATATGAACCATTTAAAATATGGTGGTAGGAGAGATTTAAATGTATGTTATATTAGTTTATGATATAAAAAGTGGTGAGGAGGGGCAGAGAGTTTTAAATAGAACTTTTAAGGTATGTAAAAAATATTTGTCCCATATTCAAAACTCAGTATTTGAAGGAGAATTAGCAGAGTCACAAATAATTAAACTAAAATATGAATTAGATGATATAATAAGAAAAGATAAAGATTCTGTAATATTATTCAAAAGTAGAAATAAAAGATGGTTAACTAAAGATATGTGGGGTAAAAAAGAAGATAGAACCAGTAACTTTATTTGATTGTCTACCTAAGATGATGTTAAAATATAAGGGAGTAGACAATTATAGTTATATTAATGGTTTATAAATTATTTAACATAACTTGTATTATAATAATAGACTATAAGAAATCCCAACTTAGTAGGTAGACAGAAATAGAAGTTATACTATAGACATATAGTGCATCATAGATGAACGC # Right flank : GTTTTAATATTAATATCGGCAAGTGCTAATTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGCACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 37-1459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSWC01000035.1 Clostridium tetani strain CN655 Scaffold4.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 37 30 100.0 36 .............................. TTTTGAAGTATATTATAAAGGCACAGTAACACGCCC 103 30 100.0 35 .............................. GCTTTAACTCTTAAAAAAGATAAAGTTCTAAATTC 168 30 100.0 36 .............................. AAGATGCAGCCAACGCACTTGGATATATGGCTTTGG 234 30 100.0 36 .............................. GGTAATGTAAGTAATTCTACAACCAATAATAGCAAT 300 30 100.0 36 .............................. ATACAGAATACAAGATTATAGTTAGTGGATATAGAA 366 30 100.0 35 .............................. AATGAAGTCAAATAATAACATACCATTTTGTGCTC 431 30 100.0 36 .............................. TTTAAATCTGGTTTATTTTTTACATTCTTCCAATCC 497 30 100.0 37 .............................. AAGTGCGTTATTTACGCCTTCTATATGTCCGAATACC 564 30 100.0 36 .............................. TTTTCATTAGCAATTCCTTTGTACTGCCATCTTCCG 630 30 100.0 38 .............................. CCTAGTACGCCCAGCATACCCAAAAAAGAACTACTTAA 698 30 100.0 38 .............................. CTGGAAAGAGGCAATAAAGCATTAGGAATAATAAAATG 766 30 100.0 38 .............................. CTTACTAACACTTTCAGACCTAGTATTAAAATAATTTT 834 30 100.0 37 .............................. GTGTTACATCTCCCAATTTCTCCTCATAATACTTTAA 901 30 100.0 36 .............................. GCTATAGCTAGTATAGTAGATACGTTGCGAGAATGG 967 30 100.0 37 .............................. AATTAATATTGGCAGTATATGCTATACCATCTATAGC 1034 30 100.0 38 .............................. TATCTAACTCAATATTTTCTTCTTTTACATCCTGTTTA 1102 30 100.0 36 .............................. AAATTAATAAAGATAGTAGGTTAAAGGGTATATTAG 1168 30 100.0 36 .............................. TTATAAAATTCTATTTCTAGTTCTTCTTGAGTATAT 1234 30 100.0 35 .............................. GTCGACCCATTGGAGTTAGACAGATGGGATTTTCA 1299 30 100.0 36 .............................. TTAGCATCTATAATATTTACTTCTTTAATAGTTCTT 1365 30 100.0 35 .............................. ATATGTGATGATGAATTAGAGAAAGTGCTTGAAAG 1430 30 96.7 0 ........................A..... | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.8 36 GTATTAGTAGCACCATATTGGAATGTAAAT # Left flank : AACTGCACAGTATCACCGCTAGCTTTTAATTCTTTAG # Right flank : TTGACTGTAACTATAGTATAAATAGGTAAATAGGGACGGTTAATGAATTTTTCAAAAGTATGATATAATAAAAACATAATTTACTTGATGAGGTATGATATGGATTTTAATGAAACAATATATAATAGAATATTAAAATTTGTTAAGGAGAATCCCGATAGTGTTTATTTGCCACAGGATTTTGATGAAGCGGGAAAGAAAGATGCATATTTTATTTTTAATGCGAAATGCGGAACGGAAAAATTTGAAATTGAAAATAGCAATAATTTAATTAAGCTTATATCAAATTATTTAAATGATGAAGCTCAATATAATGATTTAATAGAGTATATTCATGAGTTTCCAATAATAGTATATTATTTTGAGTTTTGTAGAATACTTGAAATGCAAATTAAGGAAAGCTTGTTAAGTAGGAAAAAGGTCATAGAGGTAGGAAAAAAATTTGTCACCGAAAGTAATGATAACGAACAGATAAAGCTTGGCATTGCTTTACTAGGGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGCACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 4234-4072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSWC01000049.1 Clostridium tetani strain CN655 Scaffold12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4233 30 100.0 38 .............................. TCTAAATCTGGTAGATGGTTTTGAGGTAAGTTTTGTAC 4165 30 100.0 34 .............................. ACAATGAATAAAAAAGAATTAGTAGAAGCTTTAA 4101 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TCTTAATTTTAAGAAACCTTGATTTTACAGT # Right flank : TAAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGAAATGTAAGGAAAAATATGGTATAATGGCATTACCATAAATTTGTGGGAGTGATATTTTATGAATATCTTAACAAATTGTATTATTGGTTTTATTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATAAAAAATAAAGACACATGGTATGAGGGGAATCGTTTCTGCGGGACAATACTTTTAATAAGTAGTATTATTTTTATACCATTTTCAATATTAATAAAATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATGTTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //