Array 1 4086-4968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHN010000126.1 Escherichia coli strain B-19 ESC_QB0119AA_AS_NODE_213_length_4982_cv_6.852111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4086 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 4147 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 4208 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 4269 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 4330 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 4391 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 4452 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 4513 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 4574 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 4635 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 4696 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 4757 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 4818 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 4879 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 4940 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATGTAGGGGCAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHN010000110.1 Escherichia coli strain B-19 ESC_QB0119AA_AS_NODE_19_length_46454_cv_8.096337, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 61 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 122 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 183 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 244 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 305 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15833-16596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHN010000110.1 Escherichia coli strain B-19 ESC_QB0119AA_AS_NODE_19_length_46454_cv_8.096337, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 15833 29 100.0 32 ............................. GCATTCAATATTCGGTTTTTAACTGCGGATTC 15894 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 15955 29 100.0 32 ............................. ATTTTTGCGGTATTCTCCCAGCCGCCCAGCAG 16016 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 16077 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 16138 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 16199 29 100.0 33 ............................. CCAAAAATGCGCCCCATGCGCACAAATTCGCGC 16261 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 16322 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 16383 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 16446 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 16507 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 16568 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17340-15991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHN010000355.1 Escherichia coli strain B-19 ESC_QB0119AA_AS_NODE_72_length_22777_cv_7.242517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17339 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 17279 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 17219 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 17159 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 17099 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 17039 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 16979 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 16919 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 16859 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 16799 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 16739 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 16679 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 16619 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 16558 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 16498 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 16438 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 16378 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 16318 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 16258 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 16198 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 16138 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 16078 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 16018 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4531-3661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHN010000364.1 Escherichia coli strain B-19 ESC_QB0119AA_AS_NODE_80_length_21624_cv_7.291296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4530 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 4470 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 4410 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 4350 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 4290 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 4230 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 4170 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 4110 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 4050 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 3990 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 3930 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 3870 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 3810 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 3750 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 3690 28 85.7 0 ....................T...C.CT | C,A [3664,3667] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //