Array 1 71490-72055 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI271594.1 Schleiferilactobacillus shenzhenensis LY-73 LY73.Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 71490 33 100.0 35 ................................. CCGGAGAGTGCCGGATCTGCGAAATACCCGGGCAT 71558 33 100.0 33 ................................. ATGATGCTCTTGGCAGTGTCCTTGATGCCACCG 71624 33 100.0 34 ................................. AGCTGGGCACGCCGAAGCCGGCCGATCCGTATGA 71691 33 100.0 34 ................................. TTCAGAGCTTTGCCCGTCGCAACGACTACGGCCG 71758 33 100.0 36 ................................. ATGCCGCTGGCAAAGCTGTCGTATCCAGAGTGAAAG 71827 33 100.0 31 ................................. TTCTGCTGGGGGAGATACACGGCGCTGCTTG 71891 33 100.0 34 ................................. GCTGATCTTGATCTGGCCAGCGACCAGCTTGCGC 71958 33 93.9 33 .......T......T.................. GACGCCGCCGCCCCGGCTGGGTTCAACCAACTT 72024 31 90.9 0 .....--..A....................... | G [72037] ========== ====== ====== ====== ================================= ==================================== ================== 9 33 98.3 34 GTCGCATCCCTCCGGGGGTGCGTGAATTGAAAT # Left flank : CTACCGCTTTATACAGCGCAAGAGACCGTGGCGAATTTGTTTCAAGTAATTGACAGTGCTACGACACCTATAATTGTGCATTGGGCTGGTCACAACGACGCGATGATTAACGGTATCTTGAATTCGGATACCAGCGAGGAGCAGCGCTGTCTCTTGTTGCGAGAAGCGCAACAATACACTGTACAGCTTTGGGATGATCCAAGTCGAAATGGAGATAAGTACCAAGACATTCTGATTCACGATACGAAGAGCGATTTGTGGATATTACGTCCAGAGTATTATGATGACGAAAGCGGTATGGAGATCGATTAATTTTGAAATCTGACGGAGCCATTTGACGTTTTAATAAATGGTGCGAATGTAGGGCACACAGAAAAACGTGGAGGATTCGCACCTATCTTTCATGAAAGAGCCTCGTTACACGGTTGAAAACCATGAAAACACAAAAATTTCTGCGTCATAAACGTTGAAAACAGGCAAGTAAGCTTGTTTCTACCGCG # Right flank : TCGTACTGATGAGGGCATCAACGGGGTCCATATTCATCGGATTCCCGGTAATGTGTGTTTTTGAACATGAAGTTACTTGTTACGATATCAATTGTCCGAATTGAGACAGAGCTGTGCACAAATTAGTTTCATGTGCGATACTGAGTTAAGAATTGTTTCTGGGAGAGGACATTTACTGATTGTGAAAAACAAGAACCGTTTAATGCCTGTCTTGCTGGTACAACTACTATTCATTGTACTAAGCGTCGGTTATGTACTTGCAATGGCGCCCCACGGGACGTTGGTCGCGCGTGACAGCTATGATGCGTATTTTCATCTGACTCGGATCCAAGCGTTGAATGGGATATTTCAAAGCCCTGTGAATTTCGATCTGTGGAACCATGTGGGTAACGGTACCGCTATGTTTTACCCGTGGTTGACGGTATTGCCGGCACTTCCCTTGTTTAACTTGTTTGGTGCAGTCCATGGCTTCTTGGTGTTCCTCGGGTTGGTCACGTATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCCGGGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 82708-86239 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI271585.1 Schleiferilactobacillus shenzhenensis LY-73 LY73.Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 82708 36 100.0 30 .................................... ATCCGTCAAAATTTGGCAAGAAGTTTGAAT 82774 36 100.0 30 .................................... TGCCATGGGCGCCTATTTTAATACGCTGAC 82840 36 100.0 30 .................................... GACGGGCATTGCCAAACTGTACGCCGGAGA 82906 36 100.0 30 .................................... CGCCAGTACAATCAGGCCCGGACTCGCGAA 82972 36 100.0 30 .................................... TATCTATCGTGGCGCTATCCAGGCCATGAA 83038 36 100.0 30 .................................... CTGGGTCACCTGATTGTTCAGGAATGATCT 83104 36 100.0 30 .................................... TCGAGACATCAAAATAATCGGCTACTTTCT 83170 36 100.0 30 .................................... CGTCGCCGCCGGGTAGCGGCAACTGAAATA 83236 36 100.0 30 .................................... AAGTTATTCCACGTGTTAAGACAAGCAAAT 83302 36 100.0 30 .................................... ACAACTCGGGGGGTAAATTAAAATGAATAG 83368 36 100.0 30 .................................... TCCACTTGGTCTCAGAGACAGAGGCTTGCC 83434 36 100.0 30 .................................... TTGCAGGGCGGCCAAGGCGTGGCTGTGGTA 83500 36 100.0 30 .................................... GGTCAAGGAAGGGACGACAGGAAGCGAGAA 83566 36 100.0 29 .................................... GGGGGGGTACGATCATCAGCTATTTACTT 83631 36 100.0 30 .................................... ACTGGCTGTTCTCGCATTGACGTAACCTGC 83697 36 100.0 30 .................................... CGGTTGGCCTTAACGTTGACCAAGTAGTCG 83763 36 100.0 30 .................................... TTCATGTCGGTCATTTCTTGACCCCCAATA 83829 36 100.0 30 .................................... CCAGCCACCGGAACTTCGCCATTTCTTTAT 83895 36 100.0 30 .................................... AAGAGCCTTAGCGTAGTCGTGCGAAATGCC 83961 36 100.0 30 .................................... CAAGGTTGTGTGTGGTGATGGACTGCATTT 84027 36 100.0 30 .................................... TCCCCTCCTCATCTAGTGGATGAAGAAGCA 84093 36 100.0 30 .................................... TTGGCCGGTACGCCCACTTTTTTCGCCAAA 84159 36 100.0 30 .................................... ACCCGCGCCGGTGCTGATGACAACGCCCGT 84225 36 100.0 30 .................................... GGCAGCCGTGCACCAGCAGACGTTAACGAC 84291 36 100.0 30 .................................... CGCGTTGACGTGCTGGACTTGCAAGAGGAC 84357 36 100.0 30 .................................... TACACCGAAGTTCGTCCCATTGTAACCGAT 84423 36 100.0 30 .................................... AGCCCGCGAGTTCGGGAGGGTGCGCAAAGA 84489 36 100.0 30 .................................... CCACCTTATCCAAAGTAAACTCGACGCCAG 84555 36 100.0 30 .................................... GGGCACGGGAAAAACATTACCGACACTGAT 84621 36 100.0 30 .................................... GAGCAAGGTGAACTGTACACCGCTGAGGAA 84687 36 100.0 30 .................................... AAAACACCTATACCACTGCTAAAATAAAAC 84753 36 100.0 30 .................................... TTGGGCACGTCTTTCATGATGGCCGCAAAG 84819 36 100.0 30 .................................... CTGAAGCTTTGCCATGCCCGTGTTGATCTT 84885 36 100.0 30 .................................... CGGATCAGGTTTCTTTCCAGCGGGAAAGAA 84951 36 100.0 30 .................................... CGTGCAACTCTGAGTGAACCTTACCATCAC 85017 36 97.2 30 ..................................T. TGTATCAGCTCGTTAGAGCGTGTCTGGCGG 85083 36 100.0 30 .................................... GGCTGCTGTGGTCAGCTCATCGGCATGGCT 85149 36 100.0 30 .................................... ATAGGGGGTATTGTGTTATGTGTGGAAGGG 85215 36 100.0 30 .................................... TCGCCTTGCTCTAGGTGAGCGCCCGTCAGC 85281 36 100.0 30 .................................... TTTCTGGATCAACAGCAGCAGCCGAATCTT 85347 36 100.0 29 .................................... CACGAAAGGCGGAAATTATCATGACTAAG 85412 36 100.0 30 .................................... TGGTTAGAAGAAAAGGGATATATAGTCCCC 85478 36 100.0 30 .................................... GGCGCCCGACCGTGTAAACACCTTTTTATG 85544 36 100.0 30 .................................... CTGAGCCCGCTGCGGAACTTCCGGAAAGAC 85610 36 100.0 30 .................................... CGGCAAGATTGACTGGATGACCATTGATCA 85676 36 100.0 30 .................................... GACGTGGGGCCGGGGGTCCCCTTCGTACAG 85742 36 100.0 30 .................................... CAACCGGTCTTTGCTCCTGCCCTTGGCGTA 85808 36 100.0 30 .................................... CGTCCAAATAGCCCATGCCGGGCTTGATGA 85874 36 100.0 30 .................................... GGACGGTGATGCCAATGCGCACTAACCGCA 85940 36 100.0 30 .................................... TCAGGCCTAGATAATGATGTGAAGCCATAT 86006 36 100.0 30 .................................... GCCCTGCTTGTGCATCAGCTCTTCTTCGCG 86072 36 100.0 30 .................................... ATGGTGGTCGTTGTTGTGTCCCCCCGAGCA 86138 36 100.0 30 .................................... ACGGCAAACTAAAATAGCAGTTGAAAGGTC 86204 36 97.2 0 ....T............................... | ========== ====== ====== ====== ==================================== ============================== ================== 54 36 99.9 30 GTCCCATTTTAGCCGATTGCGGAAGGATCCAATAGC # Left flank : AAATGAATCCATTCAAACGGTCCGCAACGCTATCCACATGACTGTCGAAAGCATATCTGCCGCATACGCAACAGGAAAAATGTCAGGAATCAGCCTCCCTCAGCTCATTCCATTGCATCCTCATGAGTTCGCCTAAGTTCATGCGAGTAATCGTAATGTTCGACTTGCCCGTTGTAGAAGCTGAAGACCGCAAGGCTGCAAATCGTTTCCGACATGATTTAATCTCTGAGGGGTTCGTAATGATGCAGTATTCAGTCTATTACCGCATCGTCAATGGGCTGGATATGGCAAAGAAATATGAAAATAGGATCGAAGGCTTCCTTCCTGAAAAGGGACAGGTGCGATTGCTTCTGCTCACAGAGAAGCAGTTTGCCAACATGAAGGTCCTAATTGGGGACATCAGCCCGCAAGAAAGGGATATTTCAGGAAACTCACTGACAAGTTTATAGCCAAGAAAAGACGGCTCAAATCGCATGGTTGAGCCGTCTTTACATTTATCT # Right flank : CTTCTGGAGGGATTCAATAGCAATTGCTAATATAATTGCATCATCCCTATAATTTAATTTTACCAAAACTGTCCATCAAATACATCCACATCCCCCGCCTCCACCTCAAACGGCACCATTACCGCCATCCCCGTCAACAAATCCTCCACCACCAAATAACAAATCTCCCCACTCTCAAAATCCCAATCATCAATCTTGGCAGTGACGTGCACCACCGTACTGGCCAAATTACTCAGAACGGTAATTTTGTCCGAAATCAAATTGTTATTTCCATCCACGAAATACACTTGGTGGTCAGCCCGCACAGCGCCGTGCGCCGCATCCACCAAGAAATCCAAATGCACCCGTGGACCATCAATTACCTGCTTGTTCCCCATCAGTTGCAATGGCACCACGTCTGCCTCCCGCAACCGATGACCCGCCACCCGAAATAACGGCGCTGCCTCACTGGTCACCAACTCCAGGGAATAATACAAGCAATCCGTCACGAAGTTCTCCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCATTTTAGCCGATTGCGGAAGGATCCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 10354-12360 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI271582.1 Schleiferilactobacillus shenzhenensis LY-73 LY73.Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 10354 34 100.0 34 .................................. TGCATACTGCAAACATCAACCGGTGTGTCATGGG 10422 34 100.0 33 .................................. TTTACTGTCGGTCTCAACTCGGTTTGTTCGGGA 10489 34 100.0 32 .................................. CGCGCCAAACCATCCGCCCCTCCTGAACAACC 10555 34 100.0 34 .................................. TGGTCAATATCATCGCTAATGTCCAGCAGATAGC 10623 34 100.0 34 .................................. CTGCGTCGCACTGTCATCACTTGAATCCTGCGCT 10691 34 100.0 34 .................................. TAATAGCAAGGGACGGTGAACAATGGCAAAAGGC 10759 34 100.0 34 .................................. CCAAAAATCGATTGTCCGACGAAACTGCAGGGTC 10827 34 100.0 33 .................................. GCAGAATACCCCATTATGTTAACTAACTCTGAA 10894 34 100.0 35 .................................. GTATTGAACTCTTACAGTATAGCGGGTTTGAAAGT 10963 34 100.0 33 .................................. CAGTAGGTGTCGTCCGCCATGAGCCAGATGCCA 11030 34 100.0 33 .................................. CAGCACCAAGAAGTATTTGATGATGGAAGACGC 11097 34 100.0 35 .................................. GACAAACCAAGGAACTTTTACAGCGGTACGAAATA 11166 34 100.0 33 .................................. ATGTCGGTCATGGCGGACGAAGATCAGCAACAG 11233 34 100.0 33 .................................. CCTTATAGCCAACGCTCAGCCGTCCTCCCTTGT 11300 34 100.0 35 .................................. CTAAAATAGTCAGTCCGCCCGCGTGTAATCCACCG 11369 34 100.0 35 .................................. GCTCTCCAGGGCTTTAATCATGGTCTCAGCATCAC 11438 34 100.0 35 .................................. ACGGACCGCATCCGCAGCGACAACACGACCGGCTA 11507 34 100.0 35 .................................. TCCGAGTACCCCACCCAGTACCTCGCCCCCGGCTA 11576 34 100.0 34 .................................. GGCGAAGGAATTGCAGAAGGACACTTTGGTCGCG 11644 34 100.0 34 .................................. ACTGTTCGTTGTATTTTCCACCCCAGGAAATGAT 11712 34 100.0 34 .................................. CATGGGGAAGGCGGTTACGGTGAGCCACGAAGAC 11780 34 100.0 34 .................................. CGTGCTCAGGCAATCGCACCGTTGGTTGAATATC 11848 34 100.0 34 .................................. ACGTAGTAGTACCGCCGCCCAGCGATCACGGCGT 11916 34 100.0 35 .................................. TGCTCAATGCCGTCTTGCTTCTCAGGCCATGGTGG 11985 33 79.4 35 .G.........AC....A-..T....G....... TCGGTCTCGCGGATCTCGGTAACATCGGAGACGCT 12053 33 82.4 35 ...A.......AC.A..A-............... GACCAAAGCCGTCCCTTCATACCAGCGCAAAGAAT 12121 33 82.4 35 .......TT....C...A-.............G. ATCGCCGACACCTTTTGTGGATCCTGCGGTCCACC 12189 34 85.3 34 ...........ACA....A.............G. AGCCCCAAAATGTATGCATAAAAATTGATCATGA C [12203] 12258 33 76.5 34 .C.....T.-.C.C....A..AT........... GCAGCTCCGGTACGTTCGGGGTATATATCCATCA 12325 34 73.5 0 ..T....T.C..C....T...A.......TT..G | T,A [12348,12351] ========== ====== ====== ====== ================================== =================================== ================== 30 34 96.0 34 GTCGCATCCTCTTGGGGGGTGCGTGAATTGAAAT # Left flank : CGCATCCTCTTGGGGGGTGCGTGAATTGAAATACCTTGGCTTTCAATGTAACGACGGATCACTTCAAGTCGCATCCTCTTGGGGGGTGCGTGAATTGAAATATTTTGACGGGCTCGCCGGTCTTGTCGTCCCATACGGTCGCATCCTCTTGGGGGGTGCGTGAATTGAAATAAACTGCCTGCAAGCCAGCCAAGTCCGACTGTACTGTCGCATCCTCTTGGGGGGTGCGTGAATTGAAATTGGAAACCGGATGACCACTTGACGATGGCCTTCCGTCGCATCCTCTTGGGGGGTGCGTGAATTGAAATCCGGACAATCAGCCGCAATTGCTTGAGCACATCATGTCGCATCCTCTTGGGGGGTGCGTGAATTGAAATCAGTCCTTGCCGAAGCCCGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAATAGTGCAGTATCCGCAAGTAATCCTC # Right flank : GAAGCCCTTCGAGGCCGTAACTTACCGGCGTCGCGTCCCTCCAGGGTGTCTGAATTGAAATAAGTTTCATAACTATTTTCTGGTTGCGTACACTAAGGCACGCAAATTTGAAATGAAAAGGTATTTCTCGCAATTCTTGTCGAAAATGTCCCGCTTCTACGCGTTCATGAACGAGGTCAAAGTGAGAGAAGTGAAACATCCCGGGTAAATTTCACACATCATAGTGTATTATGGTCCTTATGATCAAAACGCAGTTAAGGAAGGTACACCAAAGTGGAACTCACAAAACAAGCCGTGCAACGTCTACGCATTTCTTCTGGTTTGTATGTCAACTACATTGTACACGGTGCGGGTATCCTGATTCTTGCCCAATCAGTCGACGCATTATCGTCCCAGTGGCAAACTGGCGCTGGGACTGTTGCTACCGTAATTTCAGCCATAGGAATCGGCCGATTACTCGTCCTCTTGATTTCGGGATGGTTGAGTGATCGGCTTGGTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTCTTGGGGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-68] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //