Array 1 28928-30438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUH010000005.1 Riemerella anatipestifer strain 20190328E2-1 NODE_5_length_136970_cov_295.954044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 28928 47 100.0 30 ............................................... CCCCTCCCCCAGCTTCTCCCGGAAGCGCAG 29005 47 100.0 31 ............................................... CTGCCGTAATGCCTAAGCCTTTATGATTGAT 29083 47 100.0 30 ............................................... CAAAATGAAACTCTTTTAGAAGTATCTTGG 29160 47 100.0 30 ............................................... CAGACTGTCACTGCCCTGTGGTGAGAGATT 29237 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 29314 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 29391 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 29468 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 29545 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 29622 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 29699 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 29776 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 29853 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 29930 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 30007 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 30084 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 30161 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 30238 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 30315 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 30392 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== =============================== ================== 20 47 98.4 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 134-1782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUH010000004.1 Riemerella anatipestifer strain 20190328E2-1 NODE_4_length_157078_cov_284.684206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================================================== ================== 134 35 85.7 79 .......G.............TT....T...G... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC C,A [158,165] 250 35 85.7 79 .....................TA..T.T...G... TCCGCTGAAAATATAACGAAGCTGTGAGTAAAATGAGAGTAGTCCCAACAGACCTAGCAGATGACGGTAAACTAAACGG CT,A [271,282] 367 35 85.7 82 .......G.............TT....T...G... TCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT C,A [391,398] 486 35 85.7 81 .....T...............CT....T...G... TCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAA C,A [510,517] 604 35 88.6 81 .....................TT....T...G... TCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA T,A [628,635] 722 35 85.7 80 .......G.............TT....T...G... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC C,A [746,753] 839 35 88.6 80 .....................CT....T...G... TCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT T,A [863,870] 956 35 100.0 30 ................................... CATAGCAGTAGAACCATCAAACGCTGTGGC 1022 35 100.0 30 ................................... CCGGCAACAAAAGAAGGAGAAGAACAAAGC 1088 35 100.0 30 ................................... CAGCAACATATACGAAAATCCAGAAATCTT 1154 35 100.0 30 ................................... CTGTGCTTCCTACAACGAGTAGCGTTCCTT 1220 35 100.0 30 ................................... CTTAACTAAGTTACCTAGAAGTATAAATGA 1286 35 100.0 30 ................................... CCAATAGGACCTATTATATTTACAACAACA 1352 35 100.0 30 ................................... CATTTTGAAAATATAGAGGCGATAAGCCTT 1418 35 100.0 30 ................................... CATTCTAAAAGGTACAGAGAATGAAGCTAA 1484 35 97.1 30 ...........................A....... CTCAACCAATTTAATCTGCAACTCTGAAAT 1550 35 100.0 30 ................................... CTAATTTTAAGACATTCTACCTTACCAAAT 1616 35 100.0 30 ................................... CTGATAGGAATATTTCTTATTCTATTTTTT 1682 35 100.0 30 ................................... CTTAGGAGCAAATAAGCTGTATTTATTGGT 1747 35 74.3 0 .....................T.T...T.ATTGTT | C [1768] ========== ====== ====== ====== =================================== ================================================================================== ================== 20 35 93.9 49 GTTGTGAATACCCTTCAAATGAGAGCAGTCCCAAC # Left flank : GCTGGACTTAATCGGCGTTGTGAATACCCTTCAAATGCTTAAGTATTCACGAACTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAATG # Right flank : TATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTCT # Questionable array : NO Score: 4.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.25, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [48-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //