Array 1 211283-213232 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRP01000002.1 Neisseria meningitidis strain NCTC8554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 211283 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 211349 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 211415 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 211481 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 211547 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 211613 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 211679 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 211745 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 211811 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 211877 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 211943 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 212009 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 212075 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTGTACG 212141 36 100.0 30 .................................... CTTCCGCACTTCCAGGGGTTAAATCGGGAC 212207 36 100.0 30 .................................... ACGCTTACCATCAACACGAAAATCGGTAAC 212273 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 212339 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 212405 36 100.0 30 .................................... ATCATGACATCCTCAGATTTAGTATTCAGA 212471 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 212537 36 100.0 30 .................................... CCTGAGCATCAAAACAGGCGGAAAATTGCT 212603 36 100.0 30 .................................... GACAGCCAACAGCACGAAAGCAACGGCGAA 212669 36 100.0 30 .................................... TATCCGGACAGCCATTGTTTTCATACATAA 212735 36 100.0 30 .................................... TTTTCGTTTCAACGACGGCAATGCCGAAGT 212801 36 100.0 30 .................................... ATTATTTTTGATTTTGATTTTTTTCGTACA 212867 36 100.0 30 .................................... CCTGAGCATCAAAACAGGCGGAAAATTGCT 212933 36 100.0 30 .................................... GACAGCCAACAGCACGAAAGCAACGGCGAA 212999 36 100.0 30 .................................... TATCCGGACAGCCATTGTTTTCATACATAA 213065 36 100.0 30 .................................... TTTTCGTTTCAACGACGGCAATGCCGAAGT 213131 36 100.0 30 .................................... CTCCGCCGACAAATATGATTCCGGCTGCGG 213197 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //