Array 1 12545-11295 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBIL01000014.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051008 CFSAN051008_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12544 29 100.0 32 ............................. TCCGACTCGCCAACCTGGTCTATGTGCTCTAT 12483 29 100.0 32 ............................. TCAACAACGGACTTACATAATTTTGCTTGTAT 12422 29 96.6 32 ............................T GCACCTTCCAGGATTGCAGAAATATAATTAAT 12361 29 100.0 32 ............................. CCCGTTTTGTGGCGGTGTGGCTGATCGTGTAA 12300 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 12239 29 100.0 32 ............................. TTTTCTTCGCTTCGTTAGGCGTTACTGCTGAT 12178 29 100.0 32 ............................. GATCGCCCTCCGTTGAGCCATTATGTACAGCC 12117 29 100.0 32 ............................. GCCAGGTCCGTATGAGGACCGTATTTGAGCAG 12056 29 100.0 32 ............................. GTTCGATTCACATCAGGTCTGGGGGCTTACTA 11995 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 11934 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 11873 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 11812 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 11751 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 11690 29 100.0 32 ............................. GTGATTCGCCAGTTCGCCCGAACGGTGATCGC 11629 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 11568 29 96.6 32 ..........T.................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 11507 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 11446 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 11385 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11324 29 93.1 0 A...........T................ | A [11297] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGCAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29143-28688 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBIL01000014.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051008 CFSAN051008_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29142 29 100.0 32 ............................. GGCGCTATTACCGGCGAATTAGCCGCCGGGGG 29081 29 96.6 32 .G........................... GTTTCGGGTGGCAACCGGGAACAGAGTTCGGG 29020 29 100.0 32 ............................. CAAGTGCCACACCGGCACCGCCTTAGCGCGGA 28959 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 28898 29 100.0 32 ............................. AGGTGTCCCGGTGGATGCTGGCCCGCAGGTTC 28837 29 100.0 32 ............................. TTACGGCGATATTCAGGCGGGTAGTCCAGCAT 28776 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 28715 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //