Array 1 2330532-2331500 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024202.1 Methylomicrobium sp. wino1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2330532 36 100.0 36 .................................... CACAAATCTGGTGGCCGTCGGGTTCACTCTGTGGGC 2330604 36 100.0 35 .................................... GATTCAAAACAACAATCATTGGAGAAAAGAAAATG 2330675 36 100.0 36 .................................... TACCTTGCTGTTCTCCCAAGTACTCAACTACAGGAG 2330747 36 100.0 35 .................................... CAATTGTCCTGGAGCAACGAGCGGTCATTGACGAT 2330818 36 100.0 36 .................................... TGTGCCTGCGGGTGCGGTTGGGCCGGTGTTTACAGC 2330890 36 100.0 36 .................................... CCCAAGGCATTCCCAAACTTGAGCAACACAAGACCT 2330962 36 100.0 36 .................................... GCGGGTTGTCCCGCTCCGGTGACCAGATTCAGAACA 2331034 36 100.0 36 .................................... CGTGGATGCCTTTTTATTAAAATCATTGGAGATAGA 2331106 36 100.0 36 .................................... CAAGCTCCCTGTCAAGACCACGGTACCAGATGAGGG 2331178 36 100.0 36 .................................... AAGCAAGGTATGTACTTATGGCCAGAGTTTTGTGAA 2331250 36 100.0 35 .................................... TCGACATGCCTTCACCGAGTAAGTCCAGTTGCAAG 2331321 36 100.0 36 .................................... CGTTGTTGCTGCGGCTCTCGGATGAAGTGGAGCAGA 2331393 36 100.0 36 .................................... ACATAAGCCCTGTTTTTAACGACTCTGGATATTATT 2331465 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 14 36 100.0 36 GTCACAAAGCCCTTTCAACGGGCAGGTCGTCCGGAC # Left flank : TTGTATTCGGTCTTGCGTTGTTCCAGCGCGCAGAGCGCGGTATCGACGGCCCTGCCTAGCGGGGTGCAGCCATTGGGTTTCAAGGTGTCGAAGCCTTCGATTTGATGCGAAGGCGTCAATGACAGCATTTCGACGTCAGGAGAGCTGGTCGTAACGACGCCGATTTCCACCGAATAGGATGCAAACTCGTCGTCTTGAATTTCCTGCAGGAATTGCGCGAGACCGGCATTCAATTCGTCGATTGGGCGGTTCTTGAACGTAAGCAAACCACCGCTCATCGAAAACGAGTCGTCCAAGACCAACATGCAGGCGCAACGCGGCGATGGGTTCTCGATCAAATCGGAATAACGGGCGGGAAGGGGGTAAGTCATGATGAATCCTCGTTGACTGTTTTGAGTGGTTACAACGAGATAAACGAGAAAAACGGAGCGGATTTTAAAAAAATCGAAAATTATTTTTCGAAACAAAGTAGGGGCAAATAATCATTTGCCCCTACGGAT # Right flank : CAGCGGCCTTGGCATCCCAGAAAGGACGTGGCTTGCAGCCGCTGTCGGGCGCAACGGAGATATTTTCGGTCCGGACGAGGTGGATTCTTTCATAAAAAAAACGTCACGACAAGGGGTAACACGCGCTAGTCCGCGCCAGGCGTGGCGGGCGCGGATTTGGCTGATAAATTCAGGGCTGGAGCCTGGCCGCTCGGCTTGAATGTAAAACTGCGCCGACCGCTAACCATGCAGGGTCCACGCATCGAGTTTATTCGATGTCTGGTCCAACAGATGAACCCAGGCCAGCACTTGGCGTTCGATCAAACGCCGGTAGGTGCTGGTTTCGCCCAGCCACATTTTACGCTCGTTCATTTGGTCTTCCCACATTTTTAAATAAGCCGCCCGTGCTTGGTCCTTCAAACGACACTTGTCCGCTTGTTGCGCAAAATCCTCCAAGGTCAAGGTTTGTCTTAAAAATTTCAGCGCCAAGCGGTCGGCGAGCGGACGAAATGGCTCCATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAAGCCCTTTCAACGGGCAGGTCGTCCGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 2670173-2678783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024202.1 Methylomicrobium sp. wino1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2670173 28 100.0 32 ............................ CATAGAGCGTCATAAAATAGGGGAATTTTATG 2670233 28 100.0 32 ............................ GTCAAAAACCGGATCAATATGATCGGGAAAAT 2670293 28 100.0 32 ............................ ACCGCAGCCCGTGCAGAATCCAGATCTCGACA 2670353 28 100.0 32 ............................ CGCACCTCCGCTGTTATCGTATCCTCCAAAAA 2670413 28 100.0 32 ............................ TGTGCAGAATCCCGAGGTTGAAGCAATCATCA 2670473 28 100.0 32 ............................ GGAGTGGTGCGTTTACGTCGAAATGCCCGATG 2670533 28 100.0 32 ............................ TCATTGATATTTTGCTTGTCCTCGGTCGCTTC 2670593 28 100.0 32 ............................ TTGGCAGGCATCACCACAGGAGGGTTGCTGTG 2670653 28 100.0 32 ............................ CACGCATCGTGCGGCAGATGAATTGCGCCAAG 2670713 28 100.0 32 ............................ CAGCTTTATCATGCATCAACGCAACCCAAGGC 2670773 28 100.0 32 ............................ GCGATAGCTGAATATGTGCGTTTCGTTTTTGC 2670833 28 100.0 32 ............................ TTTGAGCTGATTAATTGACGACATAGCCTTCC 2670893 28 100.0 32 ............................ GATATCATCGGCGTTAAGTTTCATGCGATCGT 2670953 28 100.0 32 ............................ TACGAACGAGCAATATGGATGAACCCGGTAAC 2671013 28 100.0 32 ............................ AGCGAGACTGCAACAGCCCAGAGCATCAAGTC 2671073 28 100.0 32 ............................ CGGATAGACGGAATACAAAATTAGGGGATGAG 2671133 28 100.0 32 ............................ GAACTGAAACCTGTTGAGCGATGCTGAAACGA 2671193 28 100.0 32 ............................ TGATCCGCGGGCAACGAGGAGCGCATTGAGCA 2671253 28 100.0 32 ............................ TATCAATATCGTCATGGTTTTGCTGGATTCAC 2671313 28 100.0 32 ............................ ACGCTGCCCATGAGCGCGACGCCATTCGGCGC 2671373 28 100.0 32 ............................ GCATCCAAGCCGCTATCGCCGTCGTATTTCAG 2671433 28 100.0 32 ............................ GAAGCGAAGACAAAGCGCGTTGGCTTAAAAAA 2671493 28 100.0 32 ............................ TTGCTCGACAATACGCTGCATTTCAAGTTTTT 2671553 28 100.0 32 ............................ TCGGTCGCTTCTGGGAGGATCGTTGAGTTAGT 2671613 28 100.0 32 ............................ ATTTGCACAGCCGGGAGCGCTTCTTTCATGAA 2671673 28 100.0 32 ............................ TCTGTTCTCGTGATTACTTTCGGCGTGGAAAT 2671733 28 100.0 32 ............................ ATAATCCAACCGAAACAGCGGTCTGTCCCGGC 2671793 28 100.0 32 ............................ ATTCAGGTGCGGCGGATACGTCATGCCCGGCC 2671853 28 100.0 32 ............................ CGTACCAAATCGGCATTCTCGATGCTTTCGGA 2671913 28 100.0 32 ............................ TGCGCGTCGTCCAGATGGTCGGGTGACGTGTG 2671973 28 100.0 32 ............................ ATCCCGAAATTGAATCGTCCCAGTAACCGCAA 2672033 28 100.0 32 ............................ GTGTTCAGTGCATTTGTATTGATAGACCGGCA 2672093 28 100.0 32 ............................ TTATCGAGGTTTCGGCTTTCGGCGAGACAATG 2672153 28 100.0 32 ............................ TCTTATTGTAATAATTAATAAATTCTAGTCAA 2672213 28 100.0 32 ............................ TTGATCCAGTCGGTACGGCGAGCCGGTCACGC 2672273 28 100.0 32 ............................ GATATCATCGGCGTTAAGTTTCATGCGATCGT 2672333 28 100.0 32 ............................ ATCGTAGTTTAGATAAACACTCGTAAGCGGCT 2672393 28 100.0 33 ............................ CCGTTCAATTAACGACTCCGGATCAATTTCAAG 2672454 28 100.0 32 ............................ GGTGTGATCGTGGCCACGTGGTCGGTAATGTC 2672514 28 100.0 32 ............................ ATCTAGGAATGAAGATGTTAAAGCCCCATTGC 2672574 28 100.0 32 ............................ TAACCAGGGCTTATTAACGAGGTGAAAGCCAT 2672634 28 100.0 32 ............................ GGTTCAGGGTATAGCCAAGATCGCTAATCAAC 2672694 28 100.0 32 ............................ ATTTGTTGCCGCAAACACTGGCAAAGGGCGTG 2672754 28 100.0 32 ............................ CGCGACACATTCGATAACCACGCTATCGTCCT 2672814 28 100.0 32 ............................ AATCGCCAGGTTTATTGGCATTTGCATTTCAG 2672874 28 100.0 32 ............................ ACAAAGCCATTTTTTACGCCGGTGTAGCTAAT 2672934 28 100.0 32 ............................ GTTTTTCGGCTGCATCGATCTCTCTTAGCCAG 2672994 28 100.0 32 ............................ CAAAGCGATCATCAAGAGCAGTCAGGGTGCCG 2673054 28 100.0 32 ............................ ACGCAGGACGTTGAATGAGCTTCTTTACCTCT 2673114 28 100.0 33 ............................ ATAGACAACAGGCGCTAGCCGGCTTTACAAAGC 2673175 28 100.0 32 ............................ AGCGCCGATATATTTCGCGCCTATTTCGGGAC 2673235 28 100.0 32 ............................ GGTCGAAGTAGGTTACTCGGGGTTTTAATATC 2673295 28 100.0 32 ............................ AGATTTCGAGTTATCGGGTGCCGCTGTTCGAC 2673355 28 100.0 32 ............................ CATTCCTGGACCCGCCTTTTGTGACGACAAGT 2673415 28 100.0 32 ............................ GGAACGCTTCGCGGCAAAAAACTGACGACTCA 2673475 28 100.0 32 ............................ GTCACGACCTCCGATACTGTCGCGGCGTGGTC 2673535 28 100.0 32 ............................ ACTCCTCGACAGCGACATATGGCATTTTCGAC 2673595 28 100.0 32 ............................ GTCCCCCTCTTCGCGCAACGTTGGCTCCAAGA 2673655 28 100.0 32 ............................ TTGCGATGATCGCTTCAACCTCGGGATTCTGC 2673715 28 100.0 32 ............................ CAAGCGATCAAGGTCAAAGGCGTTTACGATGC 2673775 28 100.0 32 ............................ AACTCCGTACAAAATGTTAGTATGGGCAAAAT 2673835 28 100.0 32 ............................ TTTCGGAACTCTTTAGTCCGTTTTTCGGCTGC 2673895 28 100.0 32 ............................ TAGCGCAAGGACGCGCACTTCTATCGAGGCTC 2673955 28 100.0 32 ............................ CCACATGGTCGGCGAAAAGAAATCGGGCGGAA 2674015 28 100.0 32 ............................ GCTCATGTTTTCTATTTCGCGCTCGACGGTCT 2674075 28 100.0 32 ............................ ACCAGTCCGGATCAATAAAATAGGAATTCTCA 2674135 28 100.0 32 ............................ AATCTATTTCAACCGGCCCGCTAGGCTTACGA 2674195 28 100.0 32 ............................ TATTGAAAACCTGCACATCGTCGCCTTCCGGC 2674255 28 100.0 32 ............................ ATCAATGAAAGCCGACATACCAAAACAACCAG 2674315 28 100.0 32 ............................ GGCATTCTCTGCACTTTAGGCATAAAAAAACC 2674375 28 100.0 32 ............................ ATAAAGGAGCTCGATATGCAAAAATGCCCAAA 2674435 28 100.0 32 ............................ GAACTAGACGCATTGCAGCCGCCGCCACAACC 2674495 28 100.0 32 ............................ TACGAGATCACCGGCATATCTGACATCATCCG 2674555 28 100.0 32 ............................ GATCATTCAGCAAGCACAAGCCGTATTACAAA 2674615 28 100.0 32 ............................ TGTTACCAGCGACCAGGCCTCTGCGCCCATCT 2674675 28 100.0 32 ............................ GCCCAGAGCATAAAATCCCAATGGGGCACAAT 2674735 28 100.0 33 ............................ CTTCCTCAAACGCCGGCGGTAATCAGCTCTACC 2674796 28 100.0 32 ............................ ATTATCTGCTGAAATTTGGACTGATTATAACG 2674856 28 100.0 32 ............................ CACGGACGGGGCTAACCGGAGAAGATCATGAA 2674916 28 100.0 32 ............................ GACAATCATCGAGCAAGATAAGCGGCTACCGG 2674976 28 100.0 32 ............................ TTTTCGCGAAAGCGAAAGAGGCTGGAATTGAA 2675036 28 100.0 32 ............................ AACAGGAGGAACAAAAATGAAAGCAATTTTCA 2675096 28 100.0 32 ............................ ATCTAACCCAGCGCTGCTACTCGCCAGTTTTA 2675156 28 100.0 32 ............................ GCGCCTGAGGCCGTCGATGCGGCATTGCCGAC 2675216 28 100.0 32 ............................ GCGCCTTTGGTGATGGTCCGGGCATTGGATTC 2675276 28 100.0 32 ............................ CGAGACCGCCGTGCCCACGTAAAAAACGCCGT 2675336 28 100.0 32 ............................ GTTTTAGGGGTTCTGAAAAGGTCGGTTTGATG 2675396 28 100.0 32 ............................ GTCCGGCGGCAATAGTGTCGTTCCTGTCCTTT 2675456 28 100.0 32 ............................ AGGCTACCAGAGGCATCGCCGTTGATCTCGGC 2675516 28 100.0 32 ............................ GCTATGAGCAATATTTTAAACCGAGTTTTCCG 2675576 28 100.0 32 ............................ TACAATCGGGCTGTTGCCGATGCCCGCTCAGC 2675636 28 100.0 32 ............................ ACATGTTCTTTTCGGTTTTCAGCTTCTGTTTT 2675696 28 100.0 32 ............................ TTTCAAAAAGCGGGACCGATAGCCGCAAAACG 2675756 28 100.0 32 ............................ CTTCGCCAAGCGCCCATTTAATTTCGGCTTTT 2675816 28 100.0 32 ............................ ATCGCCGACGAGGATCGACACCACTAAGCCAC 2675876 28 100.0 32 ............................ AATTGATCGAGTATTCACGATGCCACCCAGCA 2675936 28 100.0 32 ............................ GATCAAAAACAATTCCCAAAAATGCTGTCATG 2675996 28 100.0 32 ............................ TTTTTTTTAAATTATGTGCAAAAACGCACTTT 2676056 28 100.0 32 ............................ AATTGATCGAGTATTCACGATGCCACCCAGCA 2676116 28 100.0 32 ............................ GATCAAAAACAATTCCCAAAAATGCTGTCATG 2676176 28 100.0 32 ............................ TTTTTTTTAAATTATGTGCAAAAACGCACTTT 2676236 28 100.0 32 ............................ ATGATCGAGCCGGACCTGTTCATATCGAATTC 2676296 28 100.0 32 ............................ GTTTCGAACCATCTCAATAATATCGCCTAGGT 2676356 28 100.0 32 ............................ ATTCCAAGTCGGCGGCGACTGAGCAAATACAT 2676416 28 100.0 32 ............................ TACCCAGTCAAATAGATCGATTTTGATGAACA 2676476 28 100.0 32 ............................ GTACAAATATTTACCGACGAACCATAAAACAC 2676536 28 100.0 32 ............................ AATCAGCGAAATCGGCAACGAGCTCGCCAAGG 2676596 28 100.0 32 ............................ AGATCTTCATCAGTTCCTTCGTTAATATCTCC 2676656 28 100.0 32 ............................ AATGAAAGCGCCGAAATTTACAGGGAGGTCAA 2676716 28 100.0 32 ............................ GCCTGGATGGAAGATCAAGGCGCCATCTGCGA 2676776 28 100.0 32 ............................ AATAACCGTTCTTCCAACATTGATCGCCGTTT 2676836 28 100.0 32 ............................ GATTAGCTATGATGGTGATACTGTAACTGTTG 2676896 28 100.0 32 ............................ GAAGCGCGGAAGCTTATTGGTTTGTCAAACAC 2676956 28 100.0 32 ............................ CGATTTGGGCGAGGTCTAGGGTGATTGTGACT 2677016 28 100.0 32 ............................ GGCTTTAAAAAGAGCCCGAAGGAGTCGGGCTT 2677076 28 100.0 32 ............................ ACGGTGAGCCACAGCGTGTTACCAATGAAAGC 2677136 28 100.0 32 ............................ CATTCCTGGTCCTGCTTTTTGTGACGACAAGT 2677196 28 100.0 32 ............................ CCGAAAAGATAGAATCGTTTCGGCTTTTGATG 2677256 28 100.0 32 ............................ TGAAGAGAAGGTGTTAGAGATTGATGCTGCGG 2677316 28 100.0 32 ............................ CACTCGGACAACCGCATCGGCGGCAATGCGGT 2677376 28 100.0 32 ............................ TCTCCTGTTAGGATGGTTTAGGCCTCGCTGTT 2677436 28 100.0 32 ............................ AAACGTCGAGGCATATATGCCAATAACGGGAT 2677496 28 100.0 32 ............................ TGTCGTCAAGCCAAACTTCGACTGGGACAATC 2677556 28 100.0 32 ............................ AGCAGCAACACGGCAAATAAACGCGCTGAAGA 2677616 28 100.0 32 ............................ ATCGGCTCTACAAATTGACTGAAGAGTTAAAC 2677676 28 100.0 32 ............................ TGTTCAGAAAATTATTAACGATGTGATTGTTC 2677736 28 100.0 32 ............................ GCTTGCTTGTCGGTTGCCGGTATGTGTTTCAA 2677796 28 100.0 32 ............................ TACTAGAGAACCTGTTCTGGCGGTTCAAAACA 2677856 28 100.0 32 ............................ AACCTGCCGCCAGTTGCCAAAAACCAGACAAC 2677916 28 100.0 32 ............................ ATCAAGGGTGGCTTTTTGATCTTGAACCCAGC 2677976 28 100.0 32 ............................ GATGAGATCATTGATTATCACATGACCTATAA 2678036 28 100.0 32 ............................ CTCAACATCCGAACATCATCGTCATGCCGCCA 2678096 28 100.0 32 ............................ TTTAAGCGCATCTGGAAACGCATCACGAAGGG 2678156 28 100.0 32 ............................ ACGCTGGCGGGGTGGCGGGCGGCTCCTGTTTC 2678216 28 100.0 32 ............................ TCATCGCTGCCTCCAGCTACCGCCAATGGCGG 2678276 28 100.0 32 ............................ ACGCTGGCGGCGTGGCGGGCGGCTCCTGTTTC 2678336 28 100.0 32 ............................ AGGTGACATATTGGCCGAGATTCCTAGTTTAC 2678396 28 100.0 32 ............................ AGCGTATGCCGATCGGCAATCTCCGGCTGTAA 2678456 28 100.0 32 ............................ TCTTTGCCGTTTCGCTCTTTAAGCGTGCCAGC 2678516 28 100.0 32 ............................ GACATGACCGGCTATGACTTGAAATGGTTGAT 2678576 28 100.0 32 ............................ TGGCACTAAGAATATCGATGTCGCCAGCTCAT 2678636 28 96.4 32 .............T.............. AATCAGTGATGAACTGAACTGGATTATCAACA 2678696 28 89.3 32 ......C...A.............A... CTTGGATATAGCTGAAGAAGCGGGCATCTATC 2678756 28 92.9 0 ................A..A........ | ========== ====== ====== ====== ============================ ================================= ================== 144 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAGCTTATTAAGCAAACCTTACCGCTATGCGATCAATGCGGCTACTCACTTAACGCGGGATAGTTTAAGGTTAATCCGTTCGTGGTGAGCCTGTCGAACCATGAGCGGATTAACCTTCACCCTTCGACAGGGCTATCCTGAGCGCAGCCGAAGGGCTTAGGGCGAACGGTTAAACCTTAGTGCTTTTGTCCCTCTTTAAGTGGGAAGCCATCAATGCTATCTGTTGGATAATTCCAGTGCGGACAACCCGTTTAAAAAAGTTGGAATTATTCGAAACGGGAAAGCCGTGTTAAAACGGGACACAATTCCGGAATGGGCGAGGGTGTTGTTGGCAGATTATTTGCTTAATACTAAAAATTAAGCAATTGGACCCAAAAAATTTAGGCTCTTTAACAATATAGAAAAATCAAATAGTTATAAAGCAACGAAAAATAATGGTTAAAACGGTTATTTGCAGATAAGTAACTGTTGCCATTATTTTTTTGCGCTTTATACTACA # Right flank : ATGCAACCAAAGAAAAGACTGGCAAAGTCCATACCATTTCACCCCTCTACGCAGCTAAGTAAACGCTCTTCATAGAATTGTCGAAAGTAGTCGATTCCACATAAAAAATGGAAGAAAATAGTGCGAATCTAGTTGAAATAAAATGATTTTTTGAATCCTTTGGTAGAATACGCGCCGATCGTCTTTGCGCCGTAATTGTTTTTGAGTTAGATAGGCTGTTTGCGTTTTAAAACAGGTTCATTTAAAGCGTTCTGTGTAATGATTGAGTTATTTCGCTGGGTGCTTAATTCGGCAATTTTGTGGATATACTTTGTAAGCTTTCAGCCCCACGGCCATTCTCGGTCCCATGCTCTGCGCTCATCATTATACATAAGTCTTGAATTACACTTTTGCAATCTTAACCAATGAGGCCTCGATACCATTGATTGTCGCTTAACACACTAGGCTTCGAAATCGCGATCTGGGGATCGCTCCCACAGAGCATCCGACCCTTTGTGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3795774-3796776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024202.1 Methylomicrobium sp. wino1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 3795774 32 100.0 33 ................................ CTTTGTTTTCGCGTTGAATACTACCCGTTAGGG 3795839 32 100.0 32 ................................ GACACGACTGGCGAGTTAATCGGACCAAGCTC 3795903 32 100.0 32 ................................ GTCCGTTTATTGCGGATCGTCGTGAGATAGGC 3795967 32 100.0 33 ................................ GACCCGTATCAATCCCCGGCGTCTGGCAATGTC 3796032 32 100.0 33 ................................ AGTACATGGGGATGTATTCGACACTGCGGTATG 3796097 32 100.0 33 ................................ GATTATCTAGTGTTTGAATGGTCCATACATCTC 3796162 32 100.0 32 ................................ AGGTCCACCAAGATCGAGAATCAGATTGTGCC 3796226 32 100.0 33 ................................ ATTGGTGATTTGTTCGAAGAACGCGTCCGGCAG 3796291 32 100.0 32 ................................ TTCCTGGTCGATCCATTCTTCGAGTGCGACAT 3796355 32 100.0 33 ................................ GCGGCAATCAAGCGGCGCTCGAATCTTTTCGAA 3796420 32 100.0 33 ................................ TATCCCATAACAGCGTTGCTGTTTGCGCACCGG 3796485 32 100.0 33 ................................ TACGGGCGCGCGCGGGACAAGGGTTTAAGCATG 3796550 32 100.0 34 ................................ CATCTCGTCATCGCTAACAACGTCTTGCATTAAA 3796616 32 100.0 34 ................................ TTTATCGATACTGCGGTACCGACAAAAAAATCGG 3796682 32 96.9 32 .............................C.. GCTGCCGAAGCGAATACAAAGCGCGTTGGCTG 3796746 31 68.8 0 ...............AAA.-T.C.C.G.CC.. | ========== ====== ====== ====== ================================ ================================== ================== 16 32 97.9 33 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CGTTCTTGTGGAAATAATGGGAGATAGATCAATGATGATACTGGTGACCTACGATGTTAGTTTTAAGACCGAAACCGGGCCCAAGCGCTTGCGGAAAATCGCGAGACTTTGCCAAGTATTCGGGCAACGGGTTCAATACTCGGTGTTCGAGATCGAAGTCGATATGGCTCAATGGACGCAGTTGAAAAACGACCTGATTAATGTGATGGACCCGGAGGAGGATAGTTTGCGGTTTTATTATCTGGGCAACAACTGGGAACGAAAGGTAGAACATGTTGGAGCCAAAAAGGTATTGGATTTGAATGGGCTGTTATTGATGTAGCGCGAACCCCAATCACTCATGAAAATACTTGGGGTTTCGCAAAATGCCCAATCGATTGATTTATTTTGTATTCTTGTTATTGCATGGCGTCTGACTATAATGAATACCGTATTTGTTTCGATCGGTTCGCATTTTAAAGCGCGTAAAGTCTTTGATTTCAACCGATTGGGTAAATGCA # Right flank : CGATTTATCAAACCTTCGGCGGCGAAGAGCTGTATCCGAGCATTGAGGAAAAAGCGGCGAATCTGTTGTATTTCATCGTCAAAAATCATTCTTTCAGCGATGGCAACAAACCCATCGCGGCGGCAATTTTTGCCTGGTTTTTACAACGGCACGATTATCTGTACAACGAAGACGGTAAAAAACGCATTGCCGATAACGCCCTGGTTGCCTTTACTTTGTTGATTGCCGAAAGCAAGCCGGAAGAAAAAGACACCATCGTCAAAGTCATTATCAATTTAATCAACGGTAACAATGGATGACTCGTCAGACGGTTCCGAGCTGGTAAAACATCACCCCACCAAGCAGGGGTAATACAAGCAGTCGTGTTACCAGCCGCCATTTAAAACTGTCGAACGTCGGATAGCAGGGTAGAACCGCAATACGAACCGAAACAGCAATGTGCCCAACAACGATTCGCCCCTAACTTTGGTGGATCTGGAATTCCATTTTTCTAAAACCGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3887785-3883428 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024202.1 Methylomicrobium sp. wino1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3887784 37 100.0 32 ..................................... TTTCTTTTAGCGTTGCGGTCACTGCTATTTTT 3887715 37 100.0 28 ..................................... AGTTTTTCGGCGATGTGTTCAACGTGCT 3887650 37 100.0 33 ..................................... AGCACTCATTGTATCACCTATTATATTATCTTT 3887580 37 100.0 33 ..................................... CTATGCCAATGCTGTTGTTGTCAGTGTGTTTCC 3887510 37 100.0 32 ..................................... GAGCTGAGTCCAGCTCTTCTAGACTTTTTTTT 3887441 37 100.0 33 ..................................... AAGTGATCGAGATTTTCCCTAACAATCGTTCTA 3887371 37 100.0 33 ..................................... GCGACTAAGATAACCTACATAAACGCTAGCGGT 3887301 37 100.0 35 ..................................... GCGCCGTGGATGTAAACGTTTACCATCCCTTTCAT 3887229 37 100.0 35 ..................................... TTTAGTTTTCTTATGTATTCAACGCACTCTAAATG 3887157 37 100.0 31 ..................................... CTATGCCAATGCTGTTGTTGTCAGTGTGTTT 3887089 37 100.0 33 ..................................... TTGTTTTGCCTTTCCAGCCTGTTATTTTCACAA 3887019 37 100.0 32 ..................................... TTACGCCATGCTCTAACCATTCTGTTTCCAGT 3886950 37 100.0 32 ..................................... AGTCGTCGCCAGGATCGACTTTGCAAAACATG 3886881 37 100.0 35 ..................................... TACTTTTTCGCGCGCAATGCGGTCGGATTCGGCTT 3886809 37 100.0 33 ..................................... CCCGAGGTTTCGCGTTCGAGCCTGTCTATTTCA 3886739 37 100.0 33 ..................................... CCCTTCCAGATTAGCCAGCCTCAGATTAGCCCC 3886669 37 100.0 35 ..................................... CGGGGCGAATGGCGCTAACGTCATGGACGCAATAG 3886597 37 100.0 35 ..................................... CGGGGCGAATGGCGCTAACGTCATGGACGCAATAG 3886525 37 100.0 34 ..................................... CAAATTTGGCGTCGTTGATTTCGTTGTTGTCTTG 3886454 37 100.0 31 ..................................... ATTAGTCCTGCGACTAATGCCTCTCTTAACG 3886386 37 100.0 34 ..................................... GCGGTTTCCGCGGCTGAGCTGTCATCCAGTGACA 3886315 37 100.0 32 ..................................... TATGCCATTGCCGGTTTCGATGACGTAGTCGA 3886246 37 100.0 31 ..................................... TGAACATGTCAGGGATGATGCCTTTGCTTTC 3886178 37 100.0 31 ..................................... AAAGCGCCCCGGAGTGAGTTGTTTTGGTATC 3886110 37 100.0 30 ..................................... CCCGGCTGTAGATCGTATTCGAACTGTTCT 3886043 37 100.0 35 ..................................... ATACGACCAACATCATTTTTAACGTGATGTCGACC 3885971 37 100.0 32 ..................................... GCATTCCTTCCAAGACTGTTCTGAATAATGTT 3885902 37 100.0 33 ..................................... AAATTATCGAACGGATACCATCCTCTTTCCGCC 3885832 37 100.0 33 ..................................... CCGCGTCATTGTCGATATCAATATCGGCTTGCA 3885762 37 100.0 34 ..................................... ATTGATTATCCCCTGTATAAGTGAGTTGCTCACT 3885691 37 100.0 32 ..................................... GGTCAAATGCCGCTTTAGCGCGGCGTGCGTTC 3885622 37 100.0 30 ..................................... TAATTTTCTTGTCTGAGCTAACACTAAAAG 3885555 37 100.0 36 ..................................... AGAGCGCTCTGAAGATTAGAGCTGTTTTGAGTACCG 3885482 37 100.0 34 ..................................... GGCGTTATCCGATTATAATCGCGTAATAATCGCG 3885411 37 100.0 33 ..................................... ATGGTTTCGGCCGCGCTGTTTAGCTGGCCTTAT 3885341 37 100.0 31 ..................................... CATAATTGAGTTTATACAGCTGCTCAATTAT 3885273 37 100.0 31 ..................................... CATAATTGAGTTTATACAGCTGCTCAATTAT 3885205 37 100.0 32 ..................................... TTGTAAATCAAGCGGCATTGCTCTCCTAATAA 3885136 37 100.0 28 ..................................... ATACTGGCGGTATTTGATTAAGATCGCC 3885071 37 100.0 32 ..................................... ACGTTGGCATTGTGAAGGTCTGCAATGTATTT 3885002 37 100.0 34 ..................................... TGGTTACTTTAAAAGGGATTAGCTTACCCTCTTT 3884931 37 100.0 34 ..................................... GTATCGAATAGGGTACTTATACTCACTTATAGCA 3884860 37 100.0 33 ..................................... CTTCTCTATATTTAGCAATGCAAGTACAGTTCT 3884790 37 100.0 29 ..................................... CAAAGATGACGGCGGCTGCGTTTAGCTTT 3884724 37 100.0 32 ..................................... TCAATGATGATTTTTTGCTTTGGTGATAACGC 3884655 37 100.0 30 ..................................... TTAACCGCCCGGAAATTGAATACATCAGTT 3884588 37 100.0 35 ..................................... CTAGCAGTCTAATTTCACTATGAGCAAGCTTATTA 3884516 37 100.0 35 ..................................... GTGTTATCCGTATTGCCACCTTGTTGACCATGTCT 3884444 37 100.0 33 ..................................... ACTTGCTTGTACTCTGCCTTTAAAAAACTCTGC 3884374 37 100.0 34 ..................................... ATAAATTGTCATCAATAGTCCAATATGCCAGAAA 3884303 37 100.0 34 ..................................... CTTGGCTTCGCCTTCGGCGCGTGATAGGCGAAAA 3884232 37 100.0 31 ..................................... TCGCGAGCCGAGAGACCCGCCGCTTCGCGAG 3884164 37 100.0 27 ..................................... CGTCACGGTAGATACTTCTACTAATGA 3884100 37 100.0 35 ..................................... AGCCTGGCCGGCCCAATGTTTTCCGTATCCCAATC 3884028 37 100.0 35 ..................................... CTGGGGTTGCGCGCTTGATACGTTCGGCCATGGCG 3883956 37 100.0 33 ..................................... ATATTCCATTCGTCAATTGCTTCGTCTAATTGC 3883886 37 100.0 31 ..................................... CAAATGCCGCTTTAGCGCGCTTAGCATTCGC 3883818 37 100.0 35 ..................................... TCTGAATAATGTTTTCATGATCTCTCTCCGGTTTG 3883746 37 100.0 36 ..................................... CTGCTAGAAAAAACAGCTCTTCACTTCTCAAAGCGC 3883673 37 100.0 30 ..................................... GCCGAATTGTTAAAGAGCCGCCGCGTTCCG 3883606 37 100.0 34 ..................................... GTTTTCAGGTCGACATGGCCTACCTTGATAAAGG 3883535 37 100.0 34 ..................................... AAATTAAGCCGTTAAGCGGTCTTAACGGCTTGTT 3883464 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 63 37 100.0 33 ATTTGAATACCAGACCTTATTAAGAAGGGATTAAGAC # Left flank : CGCTTTTACATCAACGGCGGATGGTTGGAGCAACATGTGTGGGGCGTCTGCCTAAATCTGAAAAAATCCCTGGTATTGCAGGACGTCGGACGAAGCATCGAGGTCGAACGCAACCACAGAAAACCGCCGATCAAGAATGAAATGGATATTGCGATTCTCAAGGACAACCGGCTGTACATCATAGAATGCAAAACCCATCACGACAAAAACCCGGTTAACAACAAAAATACCCAGGCATTGTACAAACTCGATAGCCTCAAGGATCTATTGGGAGGGTTACAAGCCCGCGCAATGCTGGTAAGCTACAACCCGCCGAATAAATACGATCAGCAACGAGCGCACGATCTCGGCATCGCCATCTGCGCGCATCGAAATTTGGCGCAATTATCGCAAAAATTGACGGAATGGATCAGATGAAATCAATTAACTTTTCAAAAGCCGAAAACCCCGTCAACCCCCTTTGCAACCTATTGATAACAAAAGGAGAACAGAGACGAGCT # Right flank : TGCGGTTTTTTTGATTATTTTTATCGTTCCCACGCTCTGCGTGGGAATGCCTGAGTACCGTTCCAGCGGTACGAGACGCTAGAGCGTCTCGGGCTGCATTCCCACGCTGGAGCGTGGGAACGATAGGGGGATGTGAATAATTACGGCTCTTCCGGATTTCCCGTGGTAATTTGAAAAATTAGTGACAAAGCTAATTCTTAATGAATAAATTACATTTGATACCATCTGCTTAAAGAAAATCTTCTTTTCTTATTCGGTGTCGATCCGCTATTACCACGGCAAGTACGGAAGAGCCTTAATTACGAGCAATCTACATAGCAGCAATTCCCCATTTGAGAGTAAAAAAGGGTACGGAGTGAACTTTCATCGTTCCCACGCTCTGCGTGGGAATGCATCCCGCAACGCTCCTGCGTTGCGAATCAGGTTTAACGGAATATAGTCAGGCATCATGGCGCTATGGGTATCTTGACCCTGTTGCTGTAAACAGCGTTGAATTTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAATACCAGACCTTATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //