Array 1 13554-11941 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOZ01000046.1 Micromonospora andamanensis strain NBRC 109075 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13553 29 100.0 32 ............................. TCCATGGAGCGCAGCGATACCTCGCAGGCCCT 13492 29 100.0 32 ............................. GACCCGCCCAACCTCATCCTCGGCGGCGGATT 13431 29 100.0 32 ............................. AAGTACATGGCCCCCGGTGTCGACCCCGAATT 13370 29 100.0 32 ............................. TCAGGCTTGAACCTGAGGCGGCCATGTTCCAC 13309 29 100.0 32 ............................. TGGTCCCATGTAAAGCTAGCCCCGGGTCCGGT 13248 29 96.6 32 .................A........... CGGATCGTGCATGTCGGGCTGCTCGCCGAGAT 13187 29 96.6 32 ............................T GAGCAGCCTCGGCCGGCAGCTGGCCGCCGTTC 13126 29 100.0 32 ............................. GCGGGCAAGCGAATGAATGAGGACACGCGGTA 13065 28 96.6 32 ................-............ GATCTCCGCTCGTCGGCGCTTGAGTACATCGC 13005 29 100.0 32 ............................. TGACCGGGCAGTGACCCTCCCAGAGTCACTGA 12944 29 100.0 32 ............................. GCCGAACAGACCGCCGCTTGTACTGTTGGTGT 12883 29 100.0 32 ............................. AATCTTGGTTTGGGGCTGACGTCCCCCCGGGT 12822 29 100.0 32 ............................. GCGCAGGCGGCGCGGATCGTCGCGGGCAGGGT 12761 29 100.0 32 ............................. CACCGATGGCGTGTTCGGGGCACCCACCGACC 12700 29 100.0 32 ............................. GGCACGACGATCACGGTCCCGGCCGTTGTCGT 12639 29 100.0 32 ............................. TTTCTCGTCAACTCGACCACCGGGGCCATCTA 12578 29 100.0 32 ............................. CGGGTCACCGCGGTGGACCCGCCCGCGCTCAA 12517 29 100.0 32 ............................. CGGGCCACCGGCAAGCCGTACGCCGACGACGT 12456 29 100.0 32 ............................. CACGGCCTCAGCTCGACCGCCAGCGTCACCCA 12395 29 93.1 32 ......................C.....G GTGCCCAGGTGTGTCTGGGCCTGGGCCGCCGT G [12378] 12333 29 100.0 32 ............................. CCGCGATACCGACTGTCAGGACGCGGCTCACC 12272 29 96.6 32 ........T.................... GGGAAGCGGTCATCCGGCCCGGCCATCGTGGC 12211 29 93.1 32 ......T.....................G ATGGTGCAAATGCTCGCCGTCCCGGCCGAGGC 12150 29 96.6 32 ............G................ TTCGGCAGCACGAACGGTGTCGCGTCGGTCAG 12089 29 89.7 30 G..T.......................G. GCCATGTCTACGTTCAACCAGCATTCTGGA 12030 29 86.2 32 ......A.......C...A.......T.. GGCACCGGAAGAACGCCACGGTCGAGGCCGGG 11969 29 89.7 0 .....T........C...A.......... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 97.6 32 CTGCTCCCCGCGCATGCGGGGGTGATCCC # Left flank : TGCGGACCTCCTCGTCGACGAGGAACTCCGCCGGATCCACACCGAGTTGCTCGCGTTGCGGCGACGCCCAGTAGGCGGCGTTCGCGTCCTCGAATGACTGGTCGCCGTCGTAGGAGATGACCCAGATGTGGGCATCGCGCTCGCGGTCCACCCACGACCCGTGCACCTCGAAACCGAACTCACGCCGCAACGGCACGACCAAGGTCTGCCACGCCCGCACCCACTCGTCCAACCGCCCCTGCCGCACGCTGTAGGTGCGGATCTGCACAGTCCTCACGGCGACTCCATCGTGTCCGGCAGCATCTTCCTGACGCTCGACACCGCCTGCGACGGCCGACCTCCTCGACTCGTTCAGCGGTAATCCTCACGATGACACCCGCTACGCTGAACCCCAACTCCCGCCACACAGCAACACCTCCACGAAGTGGACCTAGACGATCTTGGGAAGCAAAGTGAAGGAAAACGGCGTAATTGATCTCTAGCGCCCCAGGTCAGCAAGC # Right flank : GAGGCGCCGGCGGAGGACGCGGTCCCGGCCCCGGTCGCCGATGTTCGGGCACGCGCTGTATAGGCGATCACACGACAGCGAAGTGCCCTGGCCTGTCTAAACGCCAGGGCACTTCATGTTGAGGTACTGCGTCAGACGAGCTGCGGCATCCGTCGTGCAGCTTCGGCGATAAGCGACGGCAGCTCCTTAGGGGCGGCGAGGCCCGCAATCTCGGTCACGTCGAACCAGGCGGCGTTGCCGACCTCTTCAAGTTGCGCGTTGAGGGTGTCGTTGTAAGTGCGGCAGATGTAGACGAAGTCGATGTGGCGGTGGGGGCCGACTTTGCGGTCTTCAATGTCCATTTCGATGATCGCGAAGGGTGGGGGGATGCTGCGTACGGCAGGGTGGGTGAACGGCTCGGGTGCGAGGATTTCTGCTTCGACGCCGGTTTCTTCTACGACTTCGCGGAGGGCGGCTTCGGCGGGGTCTTCGTTGGGGTCGACGTGTCCGCCGGGGTACAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18823-17755 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOZ01000046.1 Micromonospora andamanensis strain NBRC 109075 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 18822 29 100.0 32 ............................. CGGACGCGACACACGCACCTCCACCGTCATTG 18761 29 100.0 32 ............................. GTGCCCGGCCAGTCGCAGGACTCATCCGGCTC 18700 29 100.0 32 ............................. GCGATCAGCGCGGTGACGGCTTTACCTGCGGC 18639 29 100.0 32 ............................. GAGGAAGGCGGCCGGTCCCTGACGATTGACCG 18578 29 100.0 32 ............................. ATGACAGGTCACCCCTTTCCGAGGGCGAAGGT 18517 29 100.0 32 ............................. TCGGCGGCACGCTTCGGCGACATCGGACGCAA 18456 29 100.0 32 ............................. TCCTACGCGCCATGCTCCGCCGCTTCAACGAC 18395 29 100.0 32 ............................. TGCTCCTTGATATAGGTGGAGCCGCCCAGGTT 18334 29 100.0 32 ............................. GTGCCGATGAACTCGCGCAGGATCGGCCCACG 18273 29 100.0 32 ............................. TCCCGGCCCTGGGTTTCCATGGCTGCCTTCAG 18212 29 100.0 32 ............................. CGTACGGAAAGCGTGATGGCCAGGATCCTCTG 18151 29 96.6 34 ............................A GCCTCCGCCGCGCGGAATCCGGTCATCTCATCCC 18088 29 96.6 32 ...T......................... CACACGCCGCGCAGGAAGCCGTACGCGGGAAT 18027 29 96.6 32 ............................G GACCGCGTGCGGGACGGCCAGCCGACCCTCCT GC [18007] 17964 29 100.0 32 ............................. GCTGTCGCCACGGCGGTGCAGTGGGCGTGGCA 17903 29 96.6 33 ..................A.......... AGGTCGACCGCACCCCCGGCGGCGGTCTGCAGC 17841 28 96.6 32 ......................-...... TCGGCGCTGCACGTCACGATCCGAGCCCGTGC 17781 27 86.2 0 ...............C....--......G | ========== ====== ====== ====== ============================= ================================== ================== 18 29 98.3 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TTCGACCCGTGGTTCATCGCCGGCACCATCTCCCGCACCGACAACCTCCGCATCGCCGGCCGCGCCGCCAGCACCGGCAACGGGGCCATGCGCATCGACGTCCGACGACTGTCCATCCCGGTCGTAGCACTCGAACAACAGCACGCATACGGCCAAGCCTTCCGCCAACTCGTCGAATTCCGCGCCACCCTGGAGCGAGCATCAGCGACCGGAACCACACTCACCCGCGAGATCAGCGACGCCCTGACATCCGGCACCCTCGGCCTCACATCCTGATTCGACTGACCACGATGGAGCTGGGCGGTCAGGAAACCAGGAGCAACGACCAAGACTGGTCATCCCTGAGCAGCCGTCTGAACCGGCCGCGCCCGGTACGCTGCTCTCACCGCACCTCAGCACTGAGGCATCGCCCTTGCAACACAGTCCGCAAAGAGGCGATCTTGCGAAGCAAAGTGAATGAAATCGGAGTAGTTGATCTATAGCGCCGCAGGTCAAGAAGT # Right flank : GAGAAGGTGAAGACACATGACTCGGCCGGTAACTGCTCCCTGCGCCTACCGGATCCGGCGTCGAGTGCCGAGCCGCTGGCCTGTCACGGTCGGCGCTCGGTCGACTACCGTGAACGCTGGTGCGACACGTTCGTCCGTCCATGGGGGAGGAAGATTGCGGCACGGTCGGCGTTCGTCACTGACGCTGCAATTGTCGGTGCTTCTGCTCGCGGTGCTGCTTGAGGTGACGACGAGCCTGGCCACGGACGCGGCTGCCGGTTCCGGGTTGTTCGCCTGGGTGGAGGTGATCGCCGGGCCGGCGCTGATCGTGCTGCTGCTCGTGCTGGTCGGCGGTAATGCGCTGATTCTGTGGTGGGAGAACCCTCGTACACCGAAGTCGACCTGGGACGGTGGCCGTTCGCCCTATCCGGGGCTGTCGGCGTTCACCGAGCAGGATGCGGCGGTGTTCTTCGGCCGCGACGAGCTGGCTACGGATCTGGTCCGCCGCATGCACCTGCTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 36571-35076 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOZ01000046.1 Micromonospora andamanensis strain NBRC 109075 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36570 29 100.0 32 ............................. GCTGACGGCGAGCTGGAAGTAGAGCGGGTCGA 36509 29 100.0 32 ............................. GACAGCGTGAACGTGCCGTTGCTGTTGCTGGT 36448 29 96.6 33 ............................G CGACCGCCAGCCTCAGCCACCCGGGCGTACGCG 36386 29 100.0 32 ............................. CTCCAGCCATACGACGCCGACGCTCGCGCGCG 36325 29 100.0 32 ............................. GCCCGGCGGCGGTAGGGGCCCTTGATGTGCCG 36264 29 100.0 32 ............................. CCGTTGTTGGGTATGGAACAACGACAGGTTGC 36203 29 100.0 32 ............................. ACCCCTGGTCACGCAGTTGACAGCACCACCCG 36142 29 100.0 32 ............................. GGACTCGTGCCGTGCGTGTGTGGACGGGCGAA 36081 29 100.0 33 ............................. ACGTGGACGCGGCAAACGTACGCGCCGACGTCG 36019 29 100.0 32 ............................. GGAAGTCACGTCTTGATCAAGACCCTAGGCCC 35958 28 93.1 32 .................-....C...... GGCTTGCGGGCCATGGTGCGGCCTCCCCTCGT 35898 29 96.6 33 .......................A..... GCCCGCTGGGATGCCTGGCCGAGGCTCAATGTC 35836 29 100.0 32 ............................. CAGGAGAGCTGCGACTGAAGGATCTGTTCACC 35775 29 100.0 32 ............................. AACAACACGCCGCCAGCCAGGCCTGTCAACGC 35714 29 100.0 32 ............................. TATCTGAATGACCCGCTGGGCCGGGAGGGCGC 35653 29 100.0 32 ............................. GTGACGGCGGACCTTCTGTCCGCGTACTGGTC 35592 29 100.0 32 ............................. CGGACCCTCTGGGCGAAGACCTCGCTGTAGTC 35531 29 100.0 32 ............................. GAACGACTCGGCGGTCATGTGAGAGGGAAGGA 35470 29 100.0 32 ............................. GTGTCGGCGTCAGTGAGTGGCAGATGTTCGCC 35409 29 100.0 32 ............................. CCGGGGACACGGTACGGCCGAACCCGTCCGAC 35348 29 93.1 32 ..............G.T............ GGCGGTCGTCGTTGCGGAACCGGATCGTGGCC 35287 29 93.1 32 .......A....................T TCCGCGCGGTCGAATTCCACGATCTGGATTCC 35226 29 100.0 32 ............................. TTGTGGAGGCACGAGGCGTCACCGCAACGAAC 35165 28 86.2 32 G................C....-..C... ACCTACGGGACAATGCTCGCCCTGTTCGTGCC 35105 29 89.7 0 .G........................G.G | G [35082] ========== ====== ====== ====== ============================= ================================= ================== 25 29 97.9 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : GATCACGTACCGCCGCTGTTTGGTCAGTCGTCGTTCGCGCAGGTTGCTAACAACCATCCGTGGGGTCGGACCGACGGCAGGTACGTCAAGCGGCTAGTAGCCTTTCGTGACCAGGCCGACGACGTGATGCATCGCCAGATCGCCAAAATCCCTTGTCTGCTGTCTATGGACGACATGCCGGCCCGTGCTGCTGTCAACCGCTTCCTGGCAGGCTGTGCGGATCAACTCGCCTAAGGTCCGATCGCTGCTTAAGGAGGAGGCGTAGCGGCCGCCGACGGAGCGGGCGACCGGCGGCAGCAACCACGAGCGGCGACCAACACGTGGTGCTCTCAAAGCAGGTACGAGTCGACGACCCCTTCGCCCGCGAATCGCCCGGTACGCTGCTTCCTGCCGCACGCCAACGGTCACCCGCCGCCCTGACAGCGCCAGCCCGAAGGAGTTGGTCTTGCGAAGTGAAGGAAATCAGAGCAGTTGATCTATAGCGCTGCAGGTCAAGAAGC # Right flank : GGTAGATGTCCAACCTCCGGAGCAGTCTCAACTGCTCCCGCCCACATGGAAGCCGAACTTTCAATCTGGACCTTGTAGGTTCGGCTAACCGGTGTCTTCCTCACCTTGTTTGGGAGCGCCACCGAGGTGTGGCCGAGTTTCTGGAGAACGATGTCCGAAGCGCCGGCGTTTTGATGCTTTGCTCCAGCCGCGGGACAGGGCGGGGTTGTAGGTCCGTCGGTCGGTGGGTCGACGGATCAGCGTGATGCCGTCGAGGTCGACAGGCTGCCAGTGGTGGTCGTGAACCTGGAAGCGCAGCCGTTGTTCACCTGGCTGTTGATGGACGAGCAGGGCTCGGCCAGGCCCGGCCATCTCGACAACTTTGGCCCAGAGGCGTTGCCGGATTCGGCTGTTCACGTGGCCCACGTACACGCCGGCGGATATCTCCAGCAGCCACTGAGTCAGATGGCCGCGCAGCCCTTCGGGGCAGGCGGTAAGGATGATGACGGTCATCAGAAGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //