Array 1 71324-70315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRM01000024.1 Leptospira santarosai strain 56663 Contig024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71323 29 100.0 32 ............................. GCGGTATCCCGGACTTTCATTTGATAAAATTT 71262 29 100.0 32 ............................. GCGGTATCCCGGACTTTCATTTGATAAAATTT 71201 29 100.0 32 ............................. GCCAGATCGTTAGATTCTATGAAGATCTTTCT 71140 29 100.0 32 ............................. AATCCCAAACATTTGATAACGCGAAAATGGCC 71079 29 100.0 31 ............................. GAGAGTTCCAACACTCCTGATTTTATTGGAA 71019 29 100.0 32 ............................. TATCCGGAACGTCCTTATGGAAAAGGTCGCTC 70958 29 100.0 32 ............................. GCAGTAAACGGTACTGCAACTCCAGAACTTGC 70897 29 100.0 32 ............................. GATGAATACTTTAAAAGTAAGAAGGACTTTGT 70836 29 100.0 32 ............................. AAAAAGAATCGTATCTGTTCCAGTGACCAGAC 70775 29 100.0 32 ............................. GTTCCCTCTCTCAAAAAATTACTAAATTTTCT 70714 29 100.0 32 ............................. AAATCCATTTTGCATCACTTACCTGTATATGG 70653 29 100.0 32 ............................. TTTCATCTTGAACCGCCCGGACGACTTGTTCT 70592 29 100.0 32 ............................. AAAATTCCAAGTTCTTCCGATCTGCAAACGCT 70531 29 100.0 32 ............................. TAGAAAGGCGTCCGGCTGTGGTAGCGGATTGC 70470 29 100.0 32 ............................. GAACGTCTCTTCCAATTTCTGGATATTCGTGA 70409 29 100.0 32 ............................. CGATCGAATGGGAAACGTCGTTCGCAACACAG 70348 29 93.1 0 .......................C....A | TT,TAC [70318,70324] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TTCATTTTAAATCCAAAACCTGAAAACGTGGGAGTTCCCACAAATTACGTCTCTTTACCGATTTGAAAGAATTTTTTACAATGAAGTTTGTGTATGGAGGGCGGCAGCTCTGATTCTGTGGGAGTTACGACATTCGGGAAACTGTGATTTTCTTACGCCGAACTCACGTTAAATACAATGTCTTTTGAATACGAAGTTTAAATTCAACTAACACGAGTCCGGCGTTTTCTCATGCGTTTTTTTCCATAAAACAAAATGTGGGAACTCCCACAAGAATTGAAAAGTCCGCTCGAATACTCTCGTCTAGATTCGGCACATAGGCAAACGTTGTAGACCGGGAATATGATATCACTGTAAAACACAGGGTTTGATGAGAATCATTTGTTATCTACGCTGACTCGAACGCGAAACCTAAAAATTGGTTGCAAAAATCCTCATTTGTCCTATACAAGTTTTTAG # Right flank : AGGAGTTTTTGAAAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAACACGACGGTATAAGGAAAACGAGATATCCAAATCCTACTCTAAAATTTCCGATGACATCGGAAGCGATTCTGAATCTTTAACTACCGGCAAAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCAACGGTAAGTTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCAGAGCCGAGAATGTATGCCACATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCTGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGAAACCCGAGATCGCATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAACACATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25586-26224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRM01000028.1 Leptospira santarosai strain 56663 Contig028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25586 29 100.0 32 ............................. TTCGCGCGTTTTTAAAAAATTGGAATCAGGTA 25647 29 100.0 32 ............................. AATACGCCAAGCAATACACGAGGCACCAAAGA 25708 29 100.0 32 ............................. ACCACGTCGATCAGGAACATTAAACGTAGTCG 25769 29 100.0 31 ............................. AAAGAGCGCACATGATGACGCTGGCGCTCAT 25829 29 100.0 32 ............................. TGAGGCTTAGAAAAATCGGAGTCGATGTTCCT 25890 29 96.6 33 ............C................ AGCCCGAAATTGTAGTAGAAAACAAAACCAGAC 25952 29 100.0 32 ............................. GGTCCCCGATTTGGACCGGCTCCTCTGTTTTG 26013 29 96.6 32 ............C................ ATCCTCGTGCTGAAATATCTTGGAGAAAATCT 26074 29 100.0 32 ............................. TTATGGATACAATCCGTTTTGGCTGCTGCTCG 26135 29 96.6 32 ............C................ CACACCGCGTAGATTTGCACCGCATAGATCTG 26196 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCAATCATGTTGTTTTCGAACAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCTAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAAATATACCTCTTAAAATTCCTATACAAGTTTTTAGC # Right flank : CAATGAGCAAATTTCCCACGCGTGGGAAATTTCCTTTTCCCCGGTTGAACCGCTTCCCACCATACGTAGTCGCCCTAAAAAAACGTGAGTTCGGCCTAAGAAAATCGGAGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGATTTCTTTTAAGGTTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTACTATTATTATAACATGGGCAACTCATCAGTGAAAAAGGCGACCATTCGGGCAATAGGCAACTCCGCCGGGGCTACCATTCCTAAAGCTCTATTAGAAAAGTATAATTTTTATGAAGGCGACACCGTATTACTCTTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGACTTTGAAAAAGCTATGGATATTTACCAAAAAGGTTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : CTTTTCCCCACACGCGTGGGGTTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //