Array 1 267821-265512 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134298.1 Pasteurella multocida subsp. gallicida strain NCTC10204 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 267820 28 100.0 32 ............................ TTCTGATGTCGCTTATTTTCTTGCTTTTTTTA 267760 28 100.0 32 ............................ ATCTTCTGATTGACCGTAAAAAACTTTTGTAC 267700 28 100.0 32 ............................ TAATGCACCTAGAGTTGATGTTAAAACTAAAA 267640 28 100.0 32 ............................ TATGCCTTGGTCTTTTAAAGATAAGACGGGTA 267580 28 100.0 32 ............................ ATGATGCCTTATACCAAGATGGCATGATTAAA 267520 28 100.0 33 ............................ ACACTAAAATTTCCACGTGAGCCTGATTTAACT 267459 28 100.0 32 ............................ ATACACTGATTGGCAGAAAGTTGAATTTTTCA 267399 28 100.0 32 ............................ AAGACGGCAAACTCGCAATCCCGCCACGCAAT 267339 28 100.0 32 ............................ ACTTCTAAACTAGTCATTCTTCTAGTTCCTCT 267279 28 100.0 32 ............................ GTGATTGTACCGATAATTGCCGTGTTCATTTC 267219 28 100.0 32 ............................ ACATTCTGGACAATTATCAAGATTCATACTGT 267159 28 100.0 32 ............................ CAAAAAAGATAGAATTCCTCGCAACTCTAATC 267099 28 100.0 32 ............................ AACCACTTGTCTTTCGTATTTCGAACCGACAG 267039 28 100.0 32 ............................ ATTGATACTCTCCTGTTTTCATTTCAAACCAA 266979 28 100.0 32 ............................ CGTTTAAACAGCTAACGTTACAACACGGACTT 266919 28 100.0 32 ............................ TCTTCTGCTTTTACGTTTCCTTTTTCATCGTA 266859 28 100.0 32 ............................ ATTCACCGTTGATGTTTTGCGGTCTGCCCTGA 266799 28 100.0 32 ............................ GCCTTGGAGTTCTGTCAATAACTGTACGGAAC 266739 28 100.0 32 ............................ GCACATCATACGAAGACAGAAAACCAAATCAG 266679 28 100.0 32 ............................ GTTTTCTATTCTAAAATTCTTAGTGATGGTTA 266619 28 100.0 32 ............................ ACCGAAAACAGAATAACCGCAGAAATGCGGTT 266559 28 100.0 32 ............................ TTTCAACACGACTTTAATATTTGCTAAAATTG 266499 28 100.0 32 ............................ ACATGGGCTTTGTAGCTGTACCCAGTCGCTAA 266439 28 100.0 32 ............................ TCTAGTCATTCCTCTAGTCAACCTCTAGTTAT 266379 28 100.0 32 ............................ AGTTAACACACCCGCAGTGTGCACCACTTTTA 266319 28 100.0 32 ............................ TCTTAAATACACAATTAGTTGACAAACAAGTC 266259 28 100.0 32 ............................ TTCTGTCAATTTATTTTGAGCCAATCCCCCTA 266199 28 100.0 32 ............................ CAAAAAAGATAGAATTCCTCGCAACTCTAATC 266139 28 100.0 32 ............................ AACCACTTGTCTTTCGTATTTCGAACCGACAG 266079 28 100.0 32 ............................ ATTGATACTCTCCTGTTTTCATTTCAAACCAA 266019 28 100.0 32 ............................ CGTTTAAACAGCTAACGTTACAACACGGACTT 265959 28 100.0 32 ............................ TCTTCTGCTTTTACGTTTCCTTTTTCATCGTA 265899 28 100.0 32 ............................ ATTCACCGTTGATGTTTTGCGGTCTGCCCTGA 265839 28 100.0 32 ............................ GCCTTGGAGTTCTGTCAATAACTGTACGGAAC 265779 28 100.0 32 ............................ GCACATCATACGAAGACAGAAAACCAAATCAG 265719 28 100.0 33 ............................ CAACGGCAGAAGAAAATCGTCCGAAAGCATTAG 265658 28 100.0 32 ............................ AGGTGCATCCACAATGACTTGATAACGTCTAT 265598 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGT 265538 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAAACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCTTGTGCAGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1995191-1994503 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134298.1 Pasteurella multocida subsp. gallicida strain NCTC10204 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1995190 28 100.0 32 ............................ TCGCTTCAAATTAACTATAGGACGAAATATGA 1995130 28 100.0 32 ............................ TTTTTCATAAATTTGTTCATCGAGGAATTTCT 1995070 28 100.0 32 ............................ GTTATGGAACGGTTGAATTCCAAGAACAATTT 1995010 28 100.0 32 ............................ GAGCTACAAGAGCAGCTAATGGCACGCCGTAA 1994950 28 100.0 32 ............................ TCGCTTCAAATTAACTATAGGACGAAATATGA 1994890 28 100.0 32 ............................ TTTTTCATAAATTTGTTCATCGAGGAATTTCT 1994830 28 100.0 32 ............................ GTTATGGAACGGTTGAATTCCAAGAACAATTT 1994770 28 100.0 32 ............................ AAGCACTATGCCGAAAGCACCCCACCAGTCGT 1994710 28 100.0 32 ............................ TATTTTTTCACTTTGGAAGCGTGCGACTTCTT 1994650 28 100.0 32 ............................ GCAAGCTGAAATTGACAGTTTTTACAAGCAAG 1994590 28 100.0 32 ............................ ACAATCAGCACACCTTTGGGATCAAACCACGC 1994530 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGAGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGTGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //