Array 1 43211-44245 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACEWU010000005.1 Staphylococcus chromogenes strain SC15 NODE_5_length_202561_cov_146.316, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     43211	    36	 100.0	    30	....................................	ACGAATGGCGTATTAGGCGTCTTGAAGATA 	
     43277	    36	 100.0	    30	....................................	AAAAAGCTGGATAATATTGAGCACAGTTTG 	
     43343	    36	 100.0	    31	....................................	TTAGCTACCATAGCACTATCTAATCCTGCTT	
     43410	    36	 100.0	    30	....................................	GAATGATTTTCCACCGCCTGTTTTTCCTGT 	
     43476	    36	 100.0	    30	....................................	TTACATACATGGTTACTGATATGGGAGGGT 	
     43542	    36	 100.0	    30	....................................	AATAATACAAGTATTAATAGAGACAGAGAC 	
     43608	    36	 100.0	    30	....................................	AATTAAGAGAAAAATACGCCATCGAAATCG 	
     43674	    36	 100.0	    30	....................................	GTATTGTCAGACGGGAATACGTACCCGTTT 	
     43740	    36	 100.0	    30	....................................	AAAGTAGATAACGATGTGTTAGCGGCACTT 	
     43806	    36	 100.0	    30	....................................	ATTAGATCAGTGGTAAATTCCACTTTCTCT 	
     43872	    36	 100.0	    30	....................................	TTAAAAATGGCTACACGTATAAAGACGGTT 	
     43938	    36	 100.0	    31	....................................	TGACCTGTACCTTGTCTAACATCTGTACATT	
     44005	    36	 100.0	    30	....................................	TGGACGTTTATCTTGCCTAGACTCAACCCC 	
     44071	    36	 100.0	    30	....................................	TCAGTTATGTTTAAATGCGCCATACAACTT 	
     44137	    36	 100.0	    31	....................................	CTTCATTTGGCTTGAATGATTGGATAACTAC	
     44204	    36	  94.4	     0	...........................T.......A	|                              	TTT,CA,C [44230,44237,44241]
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.7	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	                               	       

# Left flank :   GATGACACCTTCATCATTTTCCTCTTTATTATCTTCACTATGACTAGCCGCAATCGTTAAAATATTGTTGTTAAAATCAACACTAATATCAGATTTGTCCATACCTGGTAATTCAGCAGACACGATATAAGCATCGTCACGTTCAGTAATATCTGTTTTAAAGTCGTTTGTATTTAATAAACCTTGTCCAAAGTCTCTAAATAAGTCACTTGGATTCATGTCAAAAATTGAATTGTTAAATGGTTTCATTTGGAATGCCATAAAGCATCGCTCCTTCATATTATCATTATTTCGTCAATATCAAGAAACTGGTTGTGATGAAGGGAGGTAACTGATGTTCTATCCCTTACAAGTCTTATTATAAGACAAAGGTCAAAATTAGTCAAGGTCAAAGTTTGATGTTCATTTTGATCTTAATCAGGATATGTAAATTTTTAGAGAAACCTTTACATATCAAGGGGTTATGCAATTGAGAGAGTTATAGTATACTGTAGCTAGAG
# Right flank :  ATGTACTATAAAATAGAATTGAAAATTATCTTGACTTTATATTCTTACATGTTAGAATATTCTTACAAGTACTTATTGTGCTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTATGCTTAATTTATAATTGTAACTAAAAAGGGGGATACATAACATGACGAATTATATACTTGGACTCGATATAGGTATTACTTCTGTTGGATACGGGATTGTTAACAGTGAGACGAGAGAGATTATAGATGCAGGGGTACGACTTTTTCCAGAAGCAGATGTAAATAACAATGAAGGTCGACGTAGTAAAAGAGGAGCACGCCGTCTTAAAAGAAGACGTATACATCGTTTAGAGAGAGTCAAACAGCTTTTAGCCGAATACGAATTGTTAAATTCTTCATCTATTCCACAAAGCACCAATCCTTACGAAATACGTGTAAGAGGATTAAGAAATGAACT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//